pold2 (pold2)


Basic Information

Item Value
gene id pold2
gene name pold2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69726767 ~ 69738390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936233.1
CTGTTACGTAAGACGTTGTGCAACGTCGACGCCGGGTAACAGTCAAATTTCGCGGGAGATATCTAAGCTATGCTCTTTTGAAAGAACAAACTCCTTTCCAAAAGTAAACGTGCATTTCAACAAAATCGCATTTTTTGTCACGAATAAAAGGCCAATAAAGGCAGCTATGTTCTCTGAGGTAAGCGCCCCTCAGGAGGGTTCCTGTTCTCTTCTGTTGTGTCGTCCTGGCTCCGAGGACCAGGAGCCCTCCGTGTTTGACAGGGTCAAGCCGGCATACTCACCCTGCTCTGAGCGTTTCAAGCTGGGGGAGCGCAGCTTCAACCGCCAGTATGCGCACATTTACGCCACACGACTCATGCAGATGAGCCCCCTGCTCACGGAGAGGGCCCAGCAGAAATGGGATGTACGGATCAGGAAGTTGTGTGATCTGCAGATGGGTGAGCAGTGTTGCATTGTGGGAACCCTGTTCAAGCACATGGAACTGCAGCCATCCATTCTGAAGGAAATCAGTGAGGAAcacAATCTGCTGCCCCAGCCTCCGCGCACGAGGTACATCAGCGAATCAGATGAGTTGATACTGGAGGACGAGCTGCAGAGGATCAAATTAGAGGGCAATATTGATGTGGACAAGTTTGTCACAGGTAGTGTTATTGCTATTTATGGTGCAGAAAAGAATGATGGGAAATTCACAGTGGATGATTTCTGTACTGCTGACCTTCCCCCGCAGGCCCCCAGAACCACTCTCAGctcagacagGTTTGTGCTGCTGTTGTCAGGTTTGGGTCTGGGCGGTAGTCATGCAGACAGTATGCTGGCTTTACAGCTGCTTGTTGACATGGTAACGGGTCACCTAGGTGACCAGGGGGAGCAGAGTGGTGCATCGACAATCTCCAGGGTTCTACTGGCCGGGAACCTTCTGAGCCAAAGCACACAGGACAAGGACGCATCCACCAAGGCTAAATACTTGACTAAGAAAACCCAGGCAGGCACTGTGGATGCCATGCGTCTGCTGGATGAGATGCTGATGCAGCTGGTGTCGTCAGTTCCAGTGGATGTGATGCCGGGCCAGTATGATCCTACTAACTATACCCTGCCCCAGCAGCCCCTACACCACTGTatgttccccctctcctcctcctaccccaCCCTGCAGCTGGCCTCCAACCCACACCAGGCCACCCTGGATGGGGTGAGGATCCTGGGGACGTCAGGGCAGAATGTGAAAGACATCCAGAAGTACAGCAGCATGGACAGTCACCTGGAGATACTGGAGAATACACTGAGGCTTAGACACCTCGCCCCTACTGCACCTGACACACTAGGGTGTTATCCATTCTACCTGAAGGACCCTTTCATCCTGGAGGAATGTCCTCATGTGTACTTCAGCGGCAACGCCCCCTCCTACCAGGCCAAACGCATCACCGGTGCTGACGGTCAGGAAGTCCTCCTGGTGGCTATTCCAGAGTTCAGCAGCACTCAGACAGCCTGCCTGGTCAACCTCCGGACTCTGGAGTGTGAGCCAATCcgcttctcttccttctctgctggTGATGATGAGGAGAGTGAGATGAACATCAGCCACTGAAGGAGCAACGCACACTCTTTGTCCTCAGCCCCTTCCCCTGGTCCTCAAATGGAATCAGGTTGTACACTatcaaaaatgtttttaaagtgtCTGCTGAAGTCTCTCATTGGTTTCTCTTGATCAGCAAATATATCAGTCATTATATATAGTAAATATGGAGGATCAATGATGCTGTGCAGTCATCCCAGTACTGTTTGAGTAGAAGGAAACATGTTGCTaatgaaaggtgtgtgtgtgatggaacgGACTATCTAATGAAGAGCTTTGTTTGTGTGCCGATGCCCAGACTCCTGTATTTGTCAACACACATTGTTTCCATTTTAGTACGGTAGATGGTGTCATGAAGAACAAAACACAAATGCTGTACGTAAATGAGCCTTTATTCATTGAAAAAATAACTTTCCTCAGCTACGTTATGAGGAACATTTCAGAAAATCTCTCGTTCTCTCAACCTTCAACTAACATTTTGTGAAGTTAACATTTTAATGTCTGTTGGTATTATGGTTTTGCTGTCATGGGTGAAAATAATGTAAATAAATCCTCCCTTTTCAAAGAAA
>XM_036936232.1
CTGTTACGTAAGACGTTGTGCAACGTCGACGCCGGGTAACAGTCAAATTTCGCGGGAGATATCTAAGCTATGCTCTTTTGAAAGAACAAACTCCTTTCCAAAAGTAAACGTGCATTTCAACAAAATCGCATTTTTTGTCACGAATAAAAGGCCAATAAAGGCAGCTATGTTCTCTGAGGTAAGCGCCCCTCAGGAGGGTTCCTGTTCTCTTCTGTTGTGTCGTCCTGGCTCCGAGGACCAGGAGCCCTCCGTGTTTGACAGGGTCAAGCCGGCATACTCACCCTGCTCTGAGCGTTTCAAGCTGGGGGAGCGCAGCTTCAACCGCCAGTATGCGCACATTTACGCCACACGACTCATGCAGATGAGCCCCCTGCTCACGGAGAGGGCCCAGCAGAAATGGGGTGCAGATGTACGGATCAGGAAGTTGTGTGATCTGCAGATGGGTGAGCAGTGTTGCATTGTGGGAACCCTGTTCAAGCACATGGAACTGCAGCCATCCATTCTGAAGGAAATCAGTGAGGAAcacAATCTGCTGCCCCAGCCTCCGCGCACGAGGTACATCAGCGAATCAGATGAGTTGATACTGGAGGACGAGCTGCAGAGGATCAAATTAGAGGGCAATATTGATGTGGACAAGTTTGTCACAGGTAGTGTTATTGCTATTTATGGTGCAGAAAAGAATGATGGGAAATTCACAGTGGATGATTTCTGTACTGCTGACCTTCCCCCGCAGGCCCCCAGAACCACTCTCAGctcagacagGTTTGTGCTGCTGTTGTCAGGTTTGGGTCTGGGCGGTAGTCATGCAGACAGTATGCTGGCTTTACAGCTGCTTGTTGACATGGTAACGGGTCACCTAGGTGACCAGGGGGAGCAGAGTGGTGCATCGACAATCTCCAGGGTTCTACTGGCCGGGAACCTTCTGAGCCAAAGCACACAGGACAAGGACGCATCCACCAAGGCTAAATACTTGACTAAGAAAACCCAGGCAGGCACTGTGGATGCCATGCGTCTGCTGGATGAGATGCTGATGCAGCTGGTGTCGTCAGTTCCAGTGGATGTGATGCCGGGCCAGTATGATCCTACTAACTATACCCTGCCCCAGCAGCCCCTACACCACTGTatgttccccctctcctcctcctaccccaCCCTGCAGCTGGCCTCCAACCCACACCAGGCCACCCTGGATGGGGTGAGGATCCTGGGGACGTCAGGGCAGAATGTGAAAGACATCCAGAAGTACAGCAGCATGGACAGTCACCTGGAGATACTGGAGAATACACTGAGGCTTAGACACCTCGCCCCTACTGCACCTGACACACTAGGGTGTTATCCATTCTACCTGAAGGACCCTTTCATCCTGGAGGAATGTCCTCATGTGTACTTCAGCGGCAACGCCCCCTCCTACCAGGCCAAACGCATCACCGGTGCTGACGGTCAGGAAGTCCTCCTGGTGGCTATTCCAGAGTTCAGCAGCACTCAGACAGCCTGCCTGGTCAACCTCCGGACTCTGGAGTGTGAGCCAATCcgcttctcttccttctctgctggTGATGATGAGGAGAGTGAGATGAACATCAGCCACTGAAGGAGCAACGCACACTCTTTGTCCTCAGCCCCTTCCCCTGGTCCTCAAATGGAATCAGGTTGTACACTatcaaaaatgtttttaaagtgtCTGCTGAAGTCTCTCATTGGTTTCTCTTGATCAGCAAATATATCAGTCATTATATATAGTAAATATGGAGGATCAATGATGCTGTGCAGTCATCCCAGTACTGTTTGAGTAGAAGGAAACATGTTGCTaatgaaaggtgtgtgtgtgatggaacgGACTATCTAATGAAGAGCTTTGTTTGTGTGCCGATGCCCAGACTCCTGTATTTGTCAACACACATTGTTTCCATTTTAGTACGGTAGATGGTGTCATGAAGAACAAAACACAAATGCTGTACGTAAATGAGCCTTTATTCATTGAAAAAATAACTTTCCTCAGCTACGTTATGAGGAACATTTCAGAAAATCTCTCGTTCTCTCAACCTTCAACTAACATTTTGTGAAGTTAACATTTTAATGTCTGTTGGTATTATGGTTTTGCTGTCATGGGTGAAAATAATGTAAATAAATCCTCCCTTTTCAAAGAAATA

Function

symbol description
pold2 Predicted to enable DNA binding activity. Predicted to be involved in DNA strand elongation involved in DNA replication. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of delta DNA polymerase complex. Orthologous to human POLD2 (DNA polymerase delta 2, accessory subunit).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02328 POLD2; DNA polymerase delta subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936233.1 False 2142 mRNA 0.49 11 69726767 69738388
XM_036936232.1 True 2150 mRNA 0.49 11 69726767 69738390

Neighbor

gene id symbol gene type direction distance location
sb:cb288 NA coding upstream 15356 69705334 ~ 69711411 (+)
LOC110536313 LOC106580580 coding upstream 21595 69696110 ~ 69705172 (+)
agpat9l LOC106580584 coding upstream 71700 69642089 ~ 69655067 (+)
LOC110536303 LOC106580590 coding upstream 241836 69471050 ~ 69484931 (+)
ercc8 ercc8 coding upstream 269944 69435319 ~ 69456823 (+)
LOC110536321 LOC106580575 coding downstream 160171 69898561 ~ 69903158 (+)
LOC110536323 LOC106580573 coding downstream 166596 69904948 ~ 69917078 (+)
rnf122 LOC106580572 coding downstream 179304 69917694 ~ 69936419 (+)
LOC110536326 LOC106580571 coding downstream 206272 69944662 ~ 69952653 (+)
LOC110536327 LOC106580570 coding downstream 218141 69956531 ~ 69971816 (+)
G1011360 NA non-coding upstream 47183 69679373 ~ 69679584 (+)
G1011357 NA non-coding upstream 50315 69675650 ~ 69676452 (+)
G1011356 NA non-coding upstream 52293 69665603 ~ 69674474 (+)
G1011402 NA non-coding downstream 19724 69758114 ~ 69758614 (+)
G1011438 NA non-coding downstream 77965 69816355 ~ 69848623 (+)
G1011487 NA non-coding downstream 155890 69894280 ~ 69894660 (+)
G1011513 NA non-coding downstream 216906 69955296 ~ 69955531 (+)
G1011518 NA non-coding downstream 235487 69973877 ~ 69974104 (+)
G1011336 NA other upstream 92891 69633501 ~ 69633876 (+)
LOC110536300 LOC106580593 other upstream 326533 69398535 ~ 69400234 (+)
LOC110535101 LOC106580561 other upstream 901767 68687221 ~ 68847333 (+)
LOC110536291 LOC106580540 other upstream 1139725 68584627 ~ 68587134 (+)
LOC110536331 LOC106580567 other downstream 263079 70001416 ~ 70009325 (+)
G1011531 NA other downstream 280713 70019103 ~ 70019906 (+)
LOC110536338 LOC106580595 other downstream 390892 70128401 ~ 70134490 (+)
G1012975 NA other downstream 1305869 71044259 ~ 71044604 (+)

Expression


Co-expression Network