XLOC_028456 (ssbp1)


Basic Information

Item Value
gene id XLOC_028456
gene name ssbp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4752622 ~ 4756349 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055231
GTTGAACCGGAACTGACGTTATATGTTTCTTTTGCTCCTGGGGAATGTTTATGAAGACGCACCGGAAACAGCGTGGGGTTATTGCAGCCTTCTCAAGATCTACTGGATTTTCTGGATGACATATCGGTAAACATTATAGCACCATCGACGCAGCAGAGATGTTGAGAAACGCCTCCGCACAGATACTGAAACAGTTTGTCCGTCATAGGACCACAGACGCAAGTCTGACCTTGGAGAAATctattaacAAGGTGCAGATTCTTGGGCGAGTCGGGCAAGACCCCGTCATGAGGCAGGTGGAGGGCAGAAACCCCGTCACCATCTTTTCTATGGCTACAAACGAAATGTGGCGGTCCGGGGAGGGAGAGCCAGTTGGCGCAGGAGACGTCACTCAGAAAACAACATGGCACAGAATTTCTGTATTCAAACCAGGCCTCAGAGACGTGGCGTATCAGTATGTAAAGAAAGGGTCTAGGATTTTTGTGGAAGGAAAGCTCGATTATGGAGAGTATGTTGATAAAAACAATGTCAGACGACAGGCAACAACTATTATCGCAGATAATATTGTGTTTCTAAGTGAAAACCTGCGGGACCAGTAGTGAAGATGCCTTTCTGGACATATAGAGTCAAAGGACAATATTTTGTATAGTGTAACTCTGCTTATCTACATTAAACTCTGAGTATATTTGTGTCTGCCATTAGCTGTCATGCATAAAAtaacagtaattttttttgttatgattGTGTCATGCTCTCTTATTTCATACAGAGGGCGCCAGAAGATGCACTTTTTGACATGTGAACACCTTTGAGGCCCCTTTAAGTTAATTGGACTGTTTTTGTAgaagaaactatatatatataatccgtTTTTTActtctaaaacattaaatatatacgCATAGAGCCACGTCCAGTTTGTTGTGCTACCATGCTTATGTTCATGAGTAAATGTAGCAGTTTTGTCAGTAAAGGGTTTGTTATTAATACTCACACCATCTCCAAAGTTTGTGACTTCAAATATACAACACTTGCAG
>TCONS_00055232
ATGTTGAGAAACGCCTCCGCACAGATACTGAAACAGTTTGTCCGTCATAGGACCACAGACGCAAGTCTGACCTTGGAGAAATctattaacAAGGTGCAGATTCTTGGGCGAGTCGGGCAAGACCCCGTCATGAGGCAGGTGGAGGGCAGAAACCCCGTCACCATCTTTTCTATGGCTACAAACGAAATGTGGCGGTCCGGGGAGGGAGAGCCAGTTGGCGCAGGAGACGTCACTCAGAAAACAACATGGCACAGAATTTCTGTATTCAAACCAGGCCTCAGAGACGTGGCGTATCAGTATGTAAAGAAAGGGTCTAGGATTTTTGTGGAAGGAAAGCTCGATTATGGAGAGTATGTTGATAAAAACAATGTCAGACGACAGGCAACAACTATTATCGCAGATAATATTGTGTTTCTAAGTGAAAACCTGCGGGACCAGTAG

Function

symbol description
ssbp1 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in mitochondrial DNA replication and positive regulation of helicase activity. Predicted to act upstream of or within DNA replication. Predicted to be active in mitochondrial nucleoid. Human ortholog(s) of this gene implicated in optic atrophy. Orthologous to human SSBP1 (single stranded DNA binding protein 1).

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006264 mitochondrial DNA replication biological_process
GO:0051096 positive regulation of helicase activity biological_process
GO:0009295 nucleoid cellular_component
GO:0042645 mitochondrial nucleoid cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-340 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in mitochondrial DNA replication and positive regulation of helicase activity. Predicted to act upstream of or within DNA replication. Predicted to be active in mitochondrial nucleoid. Human ortholog(s) of this gene implicated in optic atrophy. Orthologous to human SSBP1 (single stranded DNA binding protein 1).

Ensembl:

ensembl_id ENSDARG00000039350

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055231 False 1037 mRNA 0.42 7 4752622 4756349
TCONS_00055232 True 441 mRNA 0.48 6 4753060 4755622

Neighbor

gene id symbol gene type direction distance location
XLOC_028455 creb3l2 coding downstream 639 4712410 ~ 4751983 (-)
XLOC_028454 DGKI coding downstream 45729 4626794 ~ 4706893 (-)
XLOC_028453 CABZ01020840.1 coding downstream 140506 4601815 ~ 4612116 (-)
XLOC_028452 rassf3 coding downstream 160335 4540223 ~ 4592287 (-)
XLOC_028451 zgc:194209 coding downstream 217433 4526248 ~ 4535189 (-)
XLOC_028457 si:ch211-258f14.2 coding upstream 1652 4758001 ~ 4780667 (-)
XLOC_028458 zgc:162331 coding upstream 26372 4782721 ~ 4795205 (-)
XLOC_028459 coa6 coding upstream 75795 4832144 ~ 4834617 (-)
XLOC_028460 ndufa5 coding upstream 174057 4930406 ~ 4932619 (-)
XLOC_028461 NA coding upstream 184118 4940467 ~ 4962892 (-)
XLOC_028450 FP102892.1 non-coding downstream 236114 4514438 ~ 4516508 (-)
XLOC_028446 CU468826.1 non-coding downstream 377918 4321168 ~ 4374704 (-)
XLOC_028443 NA non-coding downstream 523467 4178834 ~ 4229155 (-)
XLOC_028444 NA non-coding downstream 542158 4207590 ~ 4210464 (-)
XLOC_028442 NA non-coding downstream 588746 4162825 ~ 4163876 (-)
XLOC_028462 NA non-coding upstream 206608 4962957 ~ 4967711 (-)
XLOC_028471 NA non-coding upstream 665397 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 671969 5428318 ~ 5441954 (-)
XLOC_028474 NA non-coding upstream 788653 5545002 ~ 5553182 (-)

Expression


Co-expression Network