LOC110536316 (aebp1)


Basic Information

Item Value
gene id LOC110536316
gene name aebp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69738194 ~ 69770129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936231.1
CATTCGTGCCTGTCTGTGGCAGTCTGCGGAGGGAAGAGCAGTCTGCGGAGGGAAGAGCTGGTAGAAGCACTCTGCTACAGGACTAAGCTCTATTTTCAAATCTATAGAGCCAGCCTGGATTCTGCCTTCCCTCTCCTGGCTTCtccagtgagctgctctgctcaATCTGTGCTGAGATCTCCTTTTGATCTGGGCACCTGTTCCAACTCATCAGCCAGGTGAAGGTGATTCTTTCTCTTGTCTCCCTCAGCCATTGTTTTTGGGcttcttttcctccctccctcctctctgtgttcAGCCCTGCCTCATGCTTTGAGTGAGTGGGTTTAGCTGTGGCTTGCAGTGCGCGTGTAGCTCCAGAATATTCCTCACTAGAGTGAAGGTGTGGAACACTGGCGTAGAATACTGAGACAGAACAGTGAGGTGTTTTGGTGAGGTAGAATTATTTTGTAGAATACTGATTTAGAACACTGAGGTAGAATTTCTGAGTAGCGTTCTGAGCTGGAACTTTAGCAATAACTTTAATTCTGAAGTAGAATACTGTGGTGGAATACTTGATCGGAATACTGAGCTAGAAGTATTTTGTAGAACATTGAGGTAGGTACTGTAGAGTAGGGAGGATGGGGGGTCATACTGCAGTGGTGTGTTTGGTTCTGCTGGCCCTATGCTGTGTGCTACTGCTAAGAGGAGGGGAGAGCGCAGGAGGCATAGTCTCTATAGGCCAGgctgtggagagagggatggatggaggaatggaggcccTACATGGAGAGGAGTCCCAGGATGAGCCGGCTAAAGAACAGGAGCTCACAGAGACGCAAAGACAGACTGGCAAGGCAAAGAGAGCCACAGAGGAAGAAGCCGTACCAGCCCGGGTCAGGAGAgccccagaggaggaggagggcaaagGGAAGAAAAAAAAGGGTAAGAAGGACAAGAAGAACAAGGAGTCTAAAGCAGACAAAAAGCTGAAGGACAAGGGAGGCCGCCGCGGCAAAGCACCAACAACTCCACCACCgaccactaccacactaccaccgaCCACTACCACAGAGGTGTACACAGAGCCAGCGCCCACAGAACCTGACCCCTACCCAGACTTCCCCTATTTAGACAGAGAGGATGACTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACTGACTCAGAGGATGACTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACTGACTCAGAGGATGAGTACTGGAACCCTGATGATGATAAGCCAGCCACACCAGAGACTGACTCAGAGGATGAGTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACGAAATCAGAGGATGAGTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACTGACTCAGAGGATGAGTACTGGAACCCTGATGATGATAAGCCAGCCACCCCAGAGACTGACTCAGAGGATGACTactggaagggagaggaggaggagcctgCAGGCCCAGTGGTCGACCCAGAAGATGACTATTGGACGGGAGAGGACCCGACGGCCACACCCCCCCCTCTTGTGGTGGATGGAGAGGTGGACACGGGAGATGAAGACTACTGGGAAGCCAAATATGAGGTGCCCGAGAATCTTCCTTTCCCTGACGGTAAAGAGGTCGTCCCCACAGAGAAAGACGACTTGAGCTACGCTGTCACAGAGGATTCTATTACACCACCACCTACCTATGAAAGCCCATGGTACGAGGAGTATGACTATGGATATAGTGGTGGAGAgaCAAaaaaacaggaggaggaggaggagagggaaagacaaaggaaagaaaaggagagagaggacagagAGAGAGCTcagcagaggagggaggaggaagataggGAAAAAGTCAAGAAGAGACCACCCGTATTCAAAGAGCCCAAAAAGTGTCCTCCCCTGGGTATGGAGTCTCACAGGATAGAATCAGACCAGCTGctggcctcctccatgtctcaccACCGTTACAGCCAGGGCAGGGCACGGCTCAACATGCAGGCTTCAGAGGATGAGGACGACATGCATGGTGGGGCGTGGTGTCCTAACCAAGAGGACAACATTCACTGGTTTGAGATTGACGCTCGCAGAGTAACAGAGTTTACTGGGATCATAACACAAGGACGAGACTCACGCAAtgaGAGTGACTTTGTGACATCGTACTATGTGCAATTCAGTAATGACAGCAGAGAATGGACAACCATGAATGACGGTTACTCTGACTGGttgttCTTTGGTAACTCTGATAAGGACACCCCAGTGCTGAATCAGTTAGCTGAGCCCATACTAGCTCGCTACATCAGAGTCATCCCTCAGAGCTGGAACGGCAGTTGCTGTATGAGGCTGGAGGTGCTGGGATGCCCACTGcctgACCCCACCAGTGCCTACCAGAGGTTGCAGAATGAGGTGACTCCAGTCCAGTACCTGGACTTCAGACATCACAACTACTCAGATATGGTCACGCTGATGAAGTCTGTGTCTGAGGAGTGTCCCAACATCACCAGTATGTACAGCCTGGGCCGCAGCTCCAATGGACTAGACATTGTGGCCATGGTGATATCAGGCAACCCCACAGAACATGAGATAGGTGAGCCAGAGTTCCGATACACGGCTGGTCTCCATGGAAATGAGGCAACAGGGCGGGAGATGGTTCTTCTTCTGATGCAGTACCTTTGTAAGGAGTACAGAGACGGCAACCCCAGAGTGCGCCGCCTGGTGGAAGGAATACGTACCCACCTGGTGCCCTCTCTGAATCCTGACGGACAGGAGAAGGCCCTCATAGCGGGTTCAGAGTTGAGTGGTTGGACCACAGGCCACTGGACGGAGGACGGCCATGACATCTTCCACAACTTCCCTGACCTGAACAGTGTTCTGTGGGAGGCAGAGGACAAGGGTATGGTGCCCAAACTGACCCCCAATCACCATGTCAAGATCCCTGCTGACACAGTGGGGGACGACAAGATAGCTGTGGAGACTCAAGCCATCATCTCGTGGATGGAGAGCCACCCGTTTGTACTGGGGGCCAACTtccagggaggggagagggtagtGGCCTACCCCTACGACAACCACCGCCTAACCAAGGCCGCCAGCAccagcgagagagaccgggcacaCAGCCGCAAGAAGAGACAGTTCGAGGATGAGTATGACAGAGGGGCAGATTGGGATAGAGGCTATGACCGTGAGGAGCCAGAGGATGATGATAGAAACAGGGGATACCAGGAACCAGAAGAGGAGCGTTGGAACAGGGGATACCAGGATCCAGAAGAGGACCGGCGGAACAGGGGATACCAGGAACCAGAAGAGGACCGGCGGAACAGGGGATACCAGGAACCAGAAGAGGAGCGTTGGAACAGGGGATACCAGCAGCCGGAAGAGGACCGATGGAACAGGGGATACCAGGAACCAGAAGAGGACCGTTGGAACAGGGGATACCAGCAGCCGGAAGAGGACCGATGGAACAGGGTATACCAGCAGCCGGAAGAGGACCGGCAGAAcagggagctggaggaggagtggagggggcaTGGCTATGGCCacagggaagaggaagaggaggatgacagaGGGGGACATCAGGAAGCAGAGCCTGAGGATGAACCCAGGACCACGGCAGACGCCTCCTTTTTCAGGTGGTTGGCTATCTCCTACGCCTCCACTCACCTGTCCATGACATACACTTCCCACGGCTCCTGTCACGGCAATGACATCACTGGCGGCGTCGGAATCATCAACCGCGCCAAGTGGAAGCCCATCACAGGAAGTATGAATGATTTCAGCTACCTGCACACTAACTGTCTGGAGCTGTCAATGTTCCTGGGCTGTGATAAGTTCCCCCATCAGAGTGAGCTGGTCATTGAGtgggagaagaacagagaggccATGCTCACCTTCATGGAGCagGTACATCGTGGGATCAGGGGCGTGGTGAAAGACAATGAGGGGAACCCCATCACTAATGCCACAGTGTCTGTAGAGGGGGTCAACCATGATGTCACTACAGcTGTAACAGGGGACTACTGGCGCTTGTTGAACCCAGGTGAGTACCGTGTGACGGTGCGGGCAGAAGGCTTCACCCCCCTGACCAAGCTGTGTGTGGTGGGCTACGAGCCAGGGGCAACTACCTGCAGCTTTAACCTGGCCAAGTCCAACTGGGACCGCATCAAACAGATCATGGCCCTGCACGGCAACAAGCCCATCCGCTTGCTCAGCCACGGCAACGGTGGAACACGACGGAACACCGCCTCCAACGGTAACAGCCGTGTGGTTCATAACAATGGTGCTGCCGCCAATGAACCTGAGACGAGTCGCATGCGCCAGCAAAAGAGGAGGCTCGGCCGCCTCCGTCGTCTACGACAACAGAAACTGATGAGATCGACAACGACTTTGCCCCCGACAACCACGCCGGTTCCCACGACAACAGAGGCAGAACCCACCACTGCCTGGTACGACTCGTGGCTCATAGGAGAGGGGCAAACATCGGCACCAGAAGGTTTCACAGACTCCATCTTGGATTACAACTACGAGATCGACGATTACTAAGGGTAACACCAAGACCTTGTTCCAATACATCCTTTCTCCCCATTTCCTTAAAATAATCAAGGTAGGGAAGGAAGAAGTTGAACAGGACCAATTTGTCAGTCAAGCCCAGACTGTTAACTCAATTCCTGGACAATTAAGTGACCCCTTGAAAATCTGAGTGGACTGGATATGTTTAAGCAATATGGCTTAATCTCCAATAGGATAGATTGACTCTCCCCCTCCTATATTACTGAACCCATCCATTCTTTCAGATCTACAAATGGGCCACAAGAAGCGTTTAGGTATATTTACAGAAACTCAAAAGGAACAAAGATGTTGAATAGTCAGACGCACACGCtaatgtcagtgttctgtatAACTGCTTGAGTAGGTCTTTTGATACGAAGTTCAACACAAATGAAAATGTCAGTACCGATATCTGGGAAGGTCCTTTTACACCAAGGCCTTCCTAGAGAATGTGCTTCAGAGATCATGTATATGTGCTGGTTGTAAATTAAACTTATTTTTACCACCTCCACCCCTGAAGAGTAAAAACAAAGAAGCAAAATGTATTTCTTTGAAAAGGGAGGATTTATTTACATTATTTTCACCCATGACAGCAAAACCATAATACCAACAGACATTAAAATGTTAACTTCACAAAATGTTAGTTGAAGGTTGAGAGAACGAGAGATTTTCTGAAATGTTCCTCATAACGTAGCTGAGGAAAGTTATTTTTTCAATGAATAAAGGCTCATTTACGTACA

Function

symbol description
aebp1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and collagen binding activity. Involved in negative regulation of transcription by RNA polymerase II and regulation of collagen fibril organization. Located in extracellular exosome. Colocalizes with collagen-containing extracellular matrix. Implicated in Ehlers-Danlos syndrome classic-like 2.

NR:

description
inactive carboxypeptidase-like protein X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936231.1 True 5326 mRNA 0.52 23 69738194 69770129

Neighbor

gene id symbol gene type direction distance location
LOC110536311 LOC106580581 coding downstream 63736 69666111 ~ 69674458 (-)
LOC110536312 LOC106580582 coding downstream 73065 69659414 ~ 69665129 (-)
LOC110536308 LOC106580585 coding downstream 111104 69581843 ~ 69627090 (-)
LOC110535103 fgf10 coding downstream 164565 69559666 ~ 69573629 (-)
LOC110536307 paip1 coding downstream 182203 69544805 ~ 69555991 (-)
LOC110536317 LOC106580578 coding upstream 21282 69791411 ~ 69805945 (-)
LOC110535106 LOC106580600 coding upstream 51402 69821531 ~ 69823285 (-)
LOC110536318 LOC106580577 coding upstream 77094 69847223 ~ 69892082 (-)
LOC110536320 LOC106585172 coding upstream 125487 69895616 ~ 69898166 (-)
LOC110536328 LOC106580568 coding upstream 204759 69974888 ~ 69983058 (-)
G1011626 NA non-coding downstream 22524 69715451 ~ 69715670 (-)
G1011623 NA non-coding downstream 26821 69709686 ~ 69711373 (-)
G1011619 NA non-coding downstream 33232 69704297 ~ 69704962 (-)
G1011618 NA non-coding downstream 43461 69694524 ~ 69694733 (-)
G1011616 NA non-coding downstream 47005 69690893 ~ 69691189 (-)
G1011657 NA non-coding upstream 29947 69800076 ~ 69892958 (-)
G1011700 NA non-coding upstream 140239 69910368 ~ 69911768 (-)
G1011719 NA non-coding upstream 165817 69935946 ~ 69938863 (-)
G1011720 NA non-coding upstream 170722 69940851 ~ 69942377 (-)
G1011721 NA non-coding upstream 172870 69942999 ~ 69943236 (-)
G1011014 NA other downstream 431766 69305336 ~ 69306428 (-)
G1010922 NA other downstream 618708 69116507 ~ 69119486 (-)
G1010443 NA other downstream 1050232 68687257 ~ 68687962 (-)
G1009720 NA other downstream 1766866 67971071 ~ 67971328 (-)
G1007506 NA other downstream 3365245 66372642 ~ 66372949 (-)
G1012814 NA other upstream 1114347 70884476 ~ 70890991 (-)
G1013669 NA other upstream 1727179 71497308 ~ 71515434 (-)
G1013960 NA other upstream 2225952 71996081 ~ 71996688 (-)
G1014411 NA other upstream 2589156 72359285 ~ 72359505 (-)
G1014639 NA other upstream 2676525 72446654 ~ 72449340 (-)

Expression


Co-expression Network