LOC110536326 (LOC106580571)


Basic Information

Item Value
gene id LOC110536326
gene name LOC106580571
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69944662 ~ 69952653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622060.2
AGACAGAGGGTGCACTCAGCAGCAGTGAGCTCAGCCAAAGAGGGCCATTTcagctctctctgtgtcccccctctctatttttcgctctctctttctctctctcttgctctcgttctctctcgctctcaggcgtcctaatgagagagagagagctctgtcGTGGGATAATATGAAGGAAGTGCAGAGCTCTGTGCAGTAAGTTTGCTAACTCTTAAAAGAGATGCATGGCGATTATTAAATCATGTTGGATCTGTCTTATCTCTGCTATGTTGCATGCCGAAGGAGGTAGAGCAGTTGGCAAGGAAGAATGCCCTTTAACCTTTAATATGGCATGAATATGCTGTGATGGACTTCATCTATCGGTGGAATGAGTGTCGTGGGACATTAAGACCATTCTGTCATGGGGGACTTGAGAGATGAGTGTGGGCAGTGAAGACGACAGGAAGGATGACCTCTATAAGCTGAAAGCCCCTACCGTGCTCCAGAGATGTGCTGTGTAAACGCTAATGTGCTCTGAATCCACAATGCTCCGGAGGTGGCTGTTAGCTCTGGTGGCCCGTGTTGGGGTCATAGCACTAATGGTGTGCTGCTGCCTGTCTCTACTCTACCTGCTGGCCTGCAAACCCCAGAGCAGCTACAGCCATGAACAGGCCCAGGTCTGGGCTGGAGGAGCCACCAGTAAAGAGGGTTACCTGGCGCTACTGCAGGAGAgcgaggacacacacagacactatatTAACAGTCTCAGTAAGCAGATAGCTCAGCTCAAAGAGGCTCTTCAGATGAGGACCCAGCAGCTACAGGAGTCTCTGGAAAAGGCCAGGGCCAAAGGGGTTCTACCTATGGGGCTGGAGGGCCTGCATAGGCCCCAGACACACACCgacctccagGAGTTCTTCAAGGCCCAATTGAGCCGGGCTGAGGTCCAGTCTGGTGAGAAGTTGCCCAGCGAGTACGCGGTGATTCCCTACGAAAGCTTCACCCTGCACAGGGTGTACCAGCTCGAGATGGGTCTGACCCGTCATCCAGAGGAGAGGCCTGTGAGGAAGGACCGGAGAGACGAGCTGACAGGCACGCTAGAGATAGCCCTGCAGGTCCTCAACGGACCCCGGAGACACGGGGAGCGCCGCCGACGCTCCTATTCACCATCGGACTTCATAGAGGGGCTGACTCGTACAGAGCGTGACAAGGGGACAGTGTATGAGCTGATGTTTAAGGGCGAGAGGCCGCAGGACTTCAGACAGCTGGTGTTCTTCAGACCCTTCGGCCCGGTGGTCAGGGTGAAGAATGAGAGGGTGGACACACGCCACATGCTCATCAACATCATAGTACCACTGTCCAGGAGGGCTGACACATTCAGACAGTTCATCAACAACTTCAGAAAGGTGTGCATCCAGCAGGAAGGGAAGACCCACCTCACTGTGGTCTACTTTGGCAGGGACCAGATTGATGAGGTCAAAGCCATCATGGATCAGACATCCAGGGAAACCCAGTTCCGAAACTTCACGCTGATCCAACTGAATGAGGAATTCTCTCGTGGGCGGGGCTTAGAGGTGGGCGCACGGGCCTGGAGGCGGAGCCACAACGTGCTCCTCTTCTTTTGCGATGTCGACATCCACTTTACCCTAGACTTCCTCACATCCTGCAGACTCAATGCAGAGCCTGGTAAGAAAGTGTTCTACCCAGTTCTCTTCAGTCAGTACAATCCATCTCTTATCGACAATAACCAGAGTCCCTTCCCTTCTATTCAACAACAACTGGTGATAATGAAGGATGCTGGATTCTGGAGAGATTTTGGGTTTGGCATGACTTGCCAGTATAGGTCTGATTTCATCAACATAGGTGGGTTTGACCGGAACACCAAAGGCTGGGGTTTGGAGGATGTTCACCTATACAGAAAGTACTTGCACAGCAAGCTGATGGTGATTCGATCTCCATCTCGTAGCCTCTTCCACTTGTGGCATGAGAAGCAATGCGCGGACGAGCTGCAGCCAGACAAGTATAAGATGTGTATGCAGACCAAGGCCATGAGCGAGGCCTCTCACGGCCACCTGGGGGAGCTGTTCTTCACACAGGAGCTCCAGGAGCACATGGAGAGGCAGAAACTACTGAACGACTCAAGTCACTTGAGGTAGAGGTTGCCCCATAAccacagatctaagatcagaaTACCCTACCCCTTATCCTAGCCTTAACCATTAGGAGGTTGAACTATATCTGACCCTGGACCTGTGGTCAGGGTTAGGAAATCAGAAAGTCTGGAGAGGTTCTGTTGAGAGAACAATGATCTCATCACCCTACAGACTGAATTTAAGGACTGGGGAGGGCGTGTAGAGGGATGAGACATGAACTTTGTCAGGACAAGATTAAAATGTTATTGAATGAAACATTGATGTGATGTCATGTACGTCGTCATTGCCATTTTGCTGACGGATGATGGCCTAATGATCTGATGAGTCTGTTCTATGAGCATTAGGTTGAAAAGACGTTGCAAAGATGTCTTTCAACTTCTGGTGCTCACTGGGTGAAAGCAGGGAGGGCAGAAGAACCTTACCCACTTTGTTGTATTGAGACTGTCAACCTGCTATGGAATAATATTTTTGTATAAATGAAGAGAAGGATGTTTTTGTATAACACTCTGTATTTATAACTGTATCTGAATATTTATTAGAATAATACAAGATCATAATGCCTCAACCAACCAACTGACTTGGAGCCCATTACCTGGATAGAAGGATCAAGAAGCATAATTACAAGAATGTGGATTGCATGTACATCAATATTTGTGTTCTTTCTGGTCTTGCATTGCAACATTGGGAGAGTCAATATTTCAgaaccatttctctctctctttcttcccccttcccctctgtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgcgtgcgtgcgtgtgtgtgcgtgtcagagAGAGTCTATTTGTGCAGACATAGCTACAAGGTGTGGAGGCCTACAACTGCCAGTATTTCATGGTCAGGCATGTTTTGACACAGAACAGAAGAAACCCTTTGGTGGAACCTGTGTTTTAGAAGTGGGGTGGGACATAAATGTGCTCTTAttttgcctcgttttgtatcacattccagtgGCAATTTTAACATGTAAATGTTTGTGGGGAAAACTAaaaaacacaacactaaacagtacattaattgcacttgaacggtgacaaacggtgcccacaaactgttagggcctacataaagctgtcccaacacagtcccaacacct
>XM_021622061.2
AGACAGAGGGTGCACTCAGCAGCAGTGAGCTCAGCCAAAGAGGGCCATTTcagctctctctgtgtcccccctctctatttttcgctctctctttctctctctcttgctctcgttctctctcgctctcaggcgtcctaatgagagagagagagctctgtcGTGGGATAATATGAAGGAAGTGCAGAGCTCTGTGCAGCAAGGAAGAATGCCCTTTAACCTTTAATATGGCATGAATATGCTGTGATGGACTTCATCTATCGGTGGAATGAGTGTCGTGGGACATTAAGACCATTCTGTCATGGGGGACTTGAGAGATGAGTGTGGGCAGTGAAGACGACAGGAAGGATGACCTCTATAAGCTGAAAGCCCCTACCGTGCTCCAGAGATGTGCTGTGTAAACGCTAATGTGCTCTGAATCCACAATGCTCCGGAGGTGGCTGTTAGCTCTGGTGGCCCGTGTTGGGGTCATAGCACTAATGGTGTGCTGCTGCCTGTCTCTACTCTACCTGCTGGCCTGCAAACCCCAGAGCAGCTACAGCCATGAACAGGCCCAGGTCTGGGCTGGAGGAGCCACCAGTAAAGAGGGTTACCTGGCGCTACTGCAGGAGAgcgaggacacacacagacactatatTAACAGTCTCAGTAAGCAGATAGCTCAGCTCAAAGAGGCTCTTCAGATGAGGACCCAGCAGCTACAGGAGTCTCTGGAAAAGGCCAGGGCCAAAGGGGTTCTACCTATGGGGCTGGAGGGCCTGCATAGGCCCCAGACACACACCgacctccagGAGTTCTTCAAGGCCCAATTGAGCCGGGCTGAGGTCCAGTCTGGTGAGAAGTTGCCCAGCGAGTACGCGGTGATTCCCTACGAAAGCTTCACCCTGCACAGGGTGTACCAGCTCGAGATGGGTCTGACCCGTCATCCAGAGGAGAGGCCTGTGAGGAAGGACCGGAGAGACGAGCTGACAGGCACGCTAGAGATAGCCCTGCAGGTCCTCAACGGACCCCGGAGACACGGGGAGCGCCGCCGACGCTCCTATTCACCATCGGACTTCATAGAGGGGCTGACTCGTACAGAGCGTGACAAGGGGACAGTGTATGAGCTGATGTTTAAGGGCGAGAGGCCGCAGGACTTCAGACAGCTGGTGTTCTTCAGACCCTTCGGCCCGGTGGTCAGGGTGAAGAATGAGAGGGTGGACACACGCCACATGCTCATCAACATCATAGTACCACTGTCCAGGAGGGCTGACACATTCAGACAGTTCATCAACAACTTCAGAAAGGTGTGCATCCAGCAGGAAGGGAAGACCCACCTCACTGTGGTCTACTTTGGCAGGGACCAGATTGATGAGGTCAAAGCCATCATGGATCAGACATCCAGGGAAACCCAGTTCCGAAACTTCACGCTGATCCAACTGAATGAGGAATTCTCTCGTGGGCGGGGCTTAGAGGTGGGCGCACGGGCCTGGAGGCGGAGCCACAACGTGCTCCTCTTCTTTTGCGATGTCGACATCCACTTTACCCTAGACTTCCTCACATCCTGCAGACTCAATGCAGAGCCTGGTAAGAAAGTGTTCTACCCAGTTCTCTTCAGTCAGTACAATCCATCTCTTATCGACAATAACCAGAGTCCCTTCCCTTCTATTCAACAACAACTGGTGATAATGAAGGATGCTGGATTCTGGAGAGATTTTGGGTTTGGCATGACTTGCCAGTATAGGTCTGATTTCATCAACATAGGTGGGTTTGACCGGAACACCAAAGGCTGGGGTTTGGAGGATGTTCACCTATACAGAAAGTACTTGCACAGCAAGCTGATGGTGATTCGATCTCCATCTCGTAGCCTCTTCCACTTGTGGCATGAGAAGCAATGCGCGGACGAGCTGCAGCCAGACAAGTATAAGATGTGTATGCAGACCAAGGCCATGAGCGAGGCCTCTCACGGCCACCTGGGGGAGCTGTTCTTCACACAGGAGCTCCAGGAGCACATGGAGAGGCAGAAACTACTGAACGACTCAAGTCACTTGAGGTAGAGGTTGCCCCATAAccacagatctaagatcagaaTACCCTACCCCTTATCCTAGCCTTAACCATTAGGAGGTTGAACTATATCTGACCCTGGACCTGTGGTCAGGGTTAGGAAATCAGAAAGTCTGGAGAGGTTCTGTTGAGAGAACAATGATCTCATCACCCTACAGACTGAATTTAAGGACTGGGGAGGGCGTGTAGAGGGATGAGACATGAACTTTGTCAGGACAAGATTAAAATGTTATTGAATGAAACATTGATGTGATGTCATGTACGTCGTCATTGCCATTTTGCTGACGGATGATGGCCTAATGATCTGATGAGTCTGTTCTATGAGCATTAGGTTGAAAAGACGTTGCAAAGATGTCTTTCAACTTCTGGTGCTCACTGGGTGAAAGCAGGGAGGGCAGAAGAACCTTACCCACTTTGTTGTATTGAGACTGTCAACCTGCTATGGAATAATATTTTTGTATAAATGAAGAGAAGGATGTTTTTGTATAACACTCTGTATTTATAACTGTATCTGAATATTTATTAGAATAATACAAGATCATAATGCCTCAACCAACCAACTGACTTGGAGCCCATTACCTGGATAGAAGGATCAAGAAGCATAATTACAAGAATGTGGATTGCATGTACATCAATATTTGTGTTCTTTCTGGTCTTGCATTGCAACATTGGGAGAGTCAATATTTCAgaaccatttctctctctctttcttcccccttcccctctgtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgcgtgcgtgcgtgtgtgtgcgtgtcagagAGAGTCTATTTGTGCAGACATAGCTACAAGGTGTGGAGGCCTACAACTGCCAGTATTTCATGGTCAGGCATGTTTTGACACAGAACAGAAGAAACCCTTTGGTGGAACCTGTGTTTTAGAAGTGGGGTGGGACATAAATGTGCTCTTAttttgcctcgttttgtatcacattccagtgGCAATTTTAACATGTAAATGTTTGTGGGGAAAACTAaaaaacacaacactaaacagtacattaattgcacttgaacggtgacaaacggtgcccacaaactgttagggcctacataaagctgtcccaacacagtcccaacacct

Function

NR:

description
chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622060.2 False 3267 mRNA 0.49 10 69944662 69952653
XM_021622061.2 True 3165 mRNA 0.49 10 69944662 69952653

Neighbor

gene id symbol gene type direction distance location
rnf122 LOC106580572 coding upstream 8243 69917694 ~ 69936419 (+)
LOC110536323 LOC106580573 coding upstream 27584 69904948 ~ 69917078 (+)
LOC110536321 LOC106580575 coding upstream 41504 69898561 ~ 69903158 (+)
pold2 pold2 coding upstream 206272 69726767 ~ 69738390 (+)
sb:cb288 NA coding upstream 233251 69705334 ~ 69711411 (+)
LOC110536327 LOC106580570 coding downstream 3878 69956531 ~ 69971816 (+)
LOC110536329 LOC106580569 coding downstream 30525 69983168 ~ 69995816 (+)
LOC110536331 LOC106580567 coding downstream 48763 70001416 ~ 70009325 (+)
trnal-caa-3 NA coding downstream 90822 70043475 ~ 70043586 (+)
trnal-caa-4 NA coding downstream 91284 70043937 ~ 70044048 (+)
G1011487 NA non-coding upstream 50002 69894280 ~ 69894660 (+)
G1011438 NA non-coding upstream 96039 69816355 ~ 69848623 (+)
G1011402 NA non-coding upstream 186048 69758114 ~ 69758614 (+)
LOC110536313 LOC106580580 non-coding upstream 239494 69696110 ~ 69705172 (+)
G1011513 NA non-coding downstream 2643 69955296 ~ 69955531 (+)
G1011518 NA non-coding downstream 21224 69973877 ~ 69974104 (+)
G1011509 LOC106580568 non-coding downstream 22243 69974896 ~ 69976598 (+)
G1011519 NA non-coding downstream 24525 69977178 ~ 69977512 (+)
G1011336 NA other upstream 310786 69633501 ~ 69633876 (+)
LOC110536300 LOC106580593 other upstream 544428 69398535 ~ 69400234 (+)
LOC110535101 LOC106580561 other upstream 1119662 68687221 ~ 68847333 (+)
G1011531 NA other downstream 66450 70019103 ~ 70019906 (+)
LOC110536338 LOC106580595 other downstream 176629 70128401 ~ 70134490 (+)
G1012975 NA other downstream 1091606 71044259 ~ 71044604 (+)
G1013375 LOC106580618 other downstream 1520773 71473426 ~ 71474631 (+)

Expression


Co-expression Network