LOC110536327 (LOC106580570)


Basic Information

Item Value
gene id LOC110536327
gene name LOC106580570
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69956531 ~ 69971816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622062.2
CACTGCCCTATCATTACCACAACTGGAGGCCTGCCTGTGTTATTTCCGGAGCATCGTACGAGACGGGCCAGAAGATTACGAGCGTCTTTCGCTGAAAAATCCGTTTATTATGAAGGTGGGCTGTGACAATTTTAAAGGGTAAGGGATTGACAACGTAAAGGTTTTAGGAGTAGTTTGTAAACGAGACTGTATACGGTTCCCCTGGGTTAACACAATTGCCAGGCATGTTCGACAGATAAACTGTCTCTCATCTCACCGGAAGAAAGCCGACAGCAGCCGAACGCTCACGAGTTTACGGATTTGTCAGACAGAAGTCCCGAGACGCAACATGTTTGAAACGGGCAGAATCCCACTCATCCTTCTCGACGTTACCTGCCTTATTCTCGttGGACTTCCCTTTGCGATCCTCACCCCTCAGCACAATCCCTTCAAAAGGGGTTTCCTCTGTAATGATGAGTCCATCAGATACCCCCTGAAAGAGGACACCATATCCTATCAGTTACTGGGGGGAGTCATGATCCCTTTCACACTGATTGTGATAGTCAGTGGTGAGTGCCTTGGCGTCTATATGAGTCGTGTCAAAACCAAATCGTCCTTGGGGACTAACTACGTGGTGTGCATTTATAAAGCAGTGGCCAGCTTCCTATTCGGGGCTGCTGCTAGCCAATCACTGACGGATATTGCCAAGTACTCGATTGGTCGACTGCGGCCGCACTTCCTGGCTGTGTGTAAGCCTGTGTGGGACCATATCAACTGCAGGGCCGGAGGCTACATCGAGAACTTCACCTGTACCGGGGACAAGGATATGGTAGATGAGGCCAGACTTTCCTTCTTTTCTGGGCACTCATCTTTTTCTATGTACTGTATGCTGTTCCTTGCACTGTATGTCCAGGCCAGACTGCAGACAGAGTGGGCCAGGCTCCTCAGACCCACCATACAGTTCTTCCTGATTGCAATGTCCGTCTACGTGGGACTGTCGCGCATCTCTGACTACAAACACCACTGGAGTGACGTACTTACTGGCCTCCTGCAGGGGGCGATAGCCGCAATACTCACGGTGTTCTATGCGTCCGACTTCTTCAAGAGGCCTGTTGATCCAGTAGAGATACAAGAGGAGACGTCCGAAACCAGTCTCCAGGACAACCCAGATAATGAGAACCACTATGGAAGCACAAACTGAAGCTTTGGCCACAACATGACTTACTGTAGCAGACAACGCATGGAGGACTGATTGCTAAGCTAAGCTAGCTACCACTACCTGCCATCCGCTACGGAGGACTATGGTTATTTATTTCAATGCATTGCAGTTCATCGGCATTGGCTGTTGTggtggtcactttgacagagcccTGCAGACAGCTGCTAGCCCTCTCAGTGCCAATGATCTTGCCTAGGCTGTCTCCTTTGGTTGGGTGTGTAGAGCTAATGATCTGTGGATTGGGTTTCTGGTCTTTGCATTAGGCTGCGAGGTCTGAGTTGGTTGGAGCTGTTGTGTTTGCATTGGTTTGAAGCTTTTGTTTGAAATGAATGGAATCCCAGTTGTTACAGTGAGCAAAGTGTCCATGTGTGCAGCAGTGGAGCCTGCTGAGGGGAGAAaggctcattataatggctggagtggttttcatgtgtttgataccattccatctattacaatccattccagccattataatgagccaTCCTCCTCTCAGCAGGCTCCATTGGTGTGTAGCCAGGCCAATAACAAGTCTTACATCTGTGAACCCTTACTGTCCCAAAGCTTAAATGAAAGCCAGGAGACTTATTGAAATCTGAAATTATGTActatgcactgtatatattttgtaaTACTGCCTTAGCCAGATTGTTGCTGCTACTTGCTCAAAGCTCCCTGCAAACTCCTAACAAATGTGTCCAATAGTAGAAATCATGATGGCAACTACACAAATTCACTTCTTTTTTTTACAGTTTGTTGTGTCTTTTTTGAAGTACTGTTGTAAAACCTGTATCTGAGATAAAGAAAGATGGCATTCCATTTATCTTCTTTGGTACGAGGAAAAGTGCTGTGTCTGAGACACATTTTGTAAACTGTAGAAATATGTGCATTGTTTTTGTGAGATCATCAGAGACAGAAACTAGCCATACAGAAAGGCCAAACCCATACCTGTCAAATAGCCTGGGTAGGCTGCTTTTTGTTATTTCTTCAACCTTTAATTAACCAGGATGTCCCATTGACATAAAGGGTCTCTTTTTGAAATGAGAGTTAAGTGGGGCCTCTGGGCCGCAGAGGCTCAGGAGGGAAGGCAGGGTGAGTTCTGAACACAAGGAACATATTCCCAATGACTGCTCAAAAGCCACAATACAGACTAGAGGCGTAGGCTACTCACCGCAAGTAtttgtgttctgtctctgttgttCATCCCATTTCCCAATGTGGGTGTGTCCTCACCTGTCAGCCACACACATATAAACTATGGGCATGCAAATGAGAACGAAATCACATTCAAATCAAACACATTCTTATGTAACTTGCACCATAATTCACCTTAGTCCTTTAACTAACATCTGCTGTCGGTGCTTAGTTGCTGTCCGGTAAAAATGGACAGCAACTGGACCGCGCAAGCAGTGAGGTACTACCATTTTTACTGTCTGTAGAAGCTATAGGCTTTCAGTATGGCCTGCTCTTTGCGATTATTACCTGTTGAGTACTCAGAGAAGGACAGTATAGTATGGTTTGGATAACAGCACGATCACCTGCTAGGGATCTATTTGAACAATGTCTTCATGCCATGTCTAATTACAGAGCGTTATAAGGTTGAGCGAATTCTGCTTTAGggctctcctctaccctgtacaTGACTTTCATGTCCCATTACTTTTCCTGGCCCTGTGATCTGACCAGGAAACACTCTGGGCCCTAATGGAGGGTTTTCTCCATTGTGATTTTGGTCTGAAAAGAGATCACTTTTATTTTGTGTGACAGGAGGAGCCATTTGGTTCCTTCCAGCCTACCAGGCACGTTCTATTCCTCTGTCAATCAATATTTGATGTTCTAAAGGACAGCCTCTCACCAAAGTAGAGCTTAATACTACAGATTAATGGGGGACCTGTCCAGAGAATGACAATTTACAAAGAGATGATTTTAATAATATTGAAAGGATATTAGATTTTTCTGATTCAATGTTGTCAtgagactacaaagggaaatatACTGCATACAAAATCGAAGATATTGAACAGAAGGAAACGTCATGTTCATCGTGTGATATTCATGTGAAATGATCACATGACAAATAAATGTATGTTCATGTGGCTTTTGCATTTGGAAACTGACTATAAAAGCTGGTATAGTTTAGTTGATTTAATAGAAGGTCAAAACAGCTCATGCCTCGGTGCATGTCTGAGAAAGATCTAGGATAAAATACAACATCTCTCTAGAAGATGAACCAGTTAAGTTTGAAGTGTTCCATGTGTTACATGGTATAACATATTAATTACATGGTTAATAAAGTATGTGTGAAATGTGCAAAGTGGTATAAATATGCTGTTTTTAATACCATAAACATAagcctactgtctgtctggactaaTTGAAATTCCAGATGCAGGGTACTAAAtgcaaaaaaacatacatttccaCTGTCTTTTTGCATTTTATGTTGGACTCACTCATGGTAAATTGtgattagatttttttatatatatacccAGCATCACCTTAGTACGAAATGCAACAATGTCTGACACTGGGATGCCTCTTTTGGTTTTTCCTTTGTCACACGTTGTTCTGACCCGGATAATAGTGGTACACACGGCTGGGAACGAGACTATTTTGACCCAGACAATAGTCCTCTTTGACAGAAGCCCCATTCAAACTGTCACATgttgctctctccctcttgccAAGCAATGAGTGATGCTTTGGGTGATGCATTCTACAACTGAAGTGTTCAAATGAATCAACTAGGTACATTCTCTAAAATGCACAACTTAATGTTTAGAACAGTTTGAGtgcaaaa

Function

NR:

description
PREDICTED: lipid phosphate phosphohydrolase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622062.2 True 4001 mRNA 0.44 6 69956531 69971816

Neighbor

gene id symbol gene type direction distance location
LOC110536326 LOC106580571 coding upstream 3878 69944662 ~ 69952653 (+)
rnf122 LOC106580572 coding upstream 20112 69917694 ~ 69936419 (+)
LOC110536323 LOC106580573 coding upstream 39453 69904948 ~ 69917078 (+)
LOC110536321 LOC106580575 coding upstream 53373 69898561 ~ 69903158 (+)
pold2 pold2 coding upstream 218141 69726767 ~ 69738390 (+)
LOC110536329 LOC106580569 coding downstream 11362 69983168 ~ 69995816 (+)
LOC110536331 LOC106580567 coding downstream 29600 70001416 ~ 70009325 (+)
trnal-caa-3 NA coding downstream 71659 70043475 ~ 70043586 (+)
trnal-caa-4 NA coding downstream 72121 70043937 ~ 70044048 (+)
trnal-caa-5 NA coding downstream 72552 70044368 ~ 70044479 (+)
G1011513 NA non-coding upstream 1000 69955296 ~ 69955531 (+)
G1011487 NA non-coding upstream 61871 69894280 ~ 69894660 (+)
G1011438 NA non-coding upstream 107908 69816355 ~ 69848623 (+)
G1011402 NA non-coding upstream 197917 69758114 ~ 69758614 (+)
sb:cb288 NA non-coding upstream 245198 69705334 ~ 69711411 (+)
G1011518 NA non-coding downstream 2061 69973877 ~ 69974104 (+)
G1011509 LOC106580568 non-coding downstream 3080 69974896 ~ 69976598 (+)
G1011519 NA non-coding downstream 5362 69977178 ~ 69977512 (+)
G1011526 NA non-coding downstream 27395 69999211 ~ 69999540 (+)
G1011336 NA other upstream 322655 69633501 ~ 69633876 (+)
LOC110536300 LOC106580593 other upstream 556297 69398535 ~ 69400234 (+)
LOC110535101 LOC106580561 other upstream 1131531 68687221 ~ 68847333 (+)
G1011531 NA other downstream 47287 70019103 ~ 70019906 (+)
LOC110536338 LOC106580595 other downstream 157466 70128401 ~ 70134490 (+)
G1012975 NA other downstream 1072443 71044259 ~ 71044604 (+)
G1013375 LOC106580618 other downstream 1501610 71473426 ~ 71474631 (+)

Expression


Co-expression Network