XLOC_028457 (si:ch211-258f14.2)


Basic Information

Item Value
gene id XLOC_028457
gene name si:ch211-258f14.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4758001 ~ 4780667 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055233
TTTACATGAGTTAAATAGACAGAAAGCGAGAAGCACCTTACAGAGGACACAGCAGGGaatcaatgaattaattaacAACTACTCCTGTATTGCATTCACAATGAGTCCACGCGCGGGACCATATGGACCATAGCGTGCGCGCGCTGTGAAAGGTGACATTCCCATGGCCAGAACCAGCGCGGACGGGCAGAATAACAGCAAACTGGACTCTTTCCTGAAGAGAAACACCAGTCGGGATGTGTACGAGCGGATCCGAGTGTCCGAGCCGTGTGTGGTGGTGTCGGGATCGGTCAAGAAGGTGTTCATGCATGTGATTTTGAGCGACGAGTGCGTGTATTTGAGCGAGTATCACCCGCGCGCGCTGCGAGAGGCGCTCAGTTTCAGACACATCACGAGCATCGAGCTGATCAATGATTTGCCTGATTTTCTGAGTGGACAGGACCGTGAGCGATCTCTGCACATCCGTGTTGTTTATACCACAAAGAATGCCGGGGAAAAGAGCGAGAGAACCAAAGGATCCAGCAAAATGACTGAATCTCCATCACGAGCATATAACTCAGCTGCCCGTCACTCTCTGGAggGAGTGAATGCGCTTCTCCTGTCAGCATCTGAATCCTCCAGCTGGAGAATCTCTCCTTCATCATTGAGTGACGGCGctctggaggaagaagaagaggaagaagaggaaaGTGTGATTCCTAAAAGACGTTCGGCCTCCTGTCCAAACCCAGTAGTGCCGCATCTGTTTAATTCCTCCCCTGCTTCTCCTCTACCAAACATCAGCAATACTGAGCACAGATGGAGGAAAAGCCCTGAAGCGTTCAGTCACAGGGGTTCAGTCCTGAGCAGAGCCATAAGGAGAGCAACAACAACAGACAAGCAGAAGGGCGAGGAGAAAGAGGAAGAGCTGCACCTTTACGCCGTTTCTCCATCCTCACGAATATTCCTTCACCTCCAGAGCTCCTGGAGCAGCTACATCATAAGATCAACTTTGATGCTGGACCCAGTGTACATGAAGAAATGTGGCCTGTCCTCCTCTTCCCCTAAGAAACCGATAAATCATAAGATCAGCTGGGAACGGACGTGTCAGTTGTTCAGTCAGTTGAGCGGAGAGCTGCTCCAGGAAAACATCAGTCTGGAGAGTCTGTATTTACTGCTGCAGGAGCTGCGCACGGCCACATACCGAAACCCCACCATCAAAAAACTCTTCTGGAGGTTTCTGCAACAGTATGAAGATAAAGACAATGTCTCTGTGTCCTGCAGGCTTTGCACTGTAGTGGTTCAGATATTAAGCCTGATGTTCAGGGAAACGGAGATCGAACCAAAGAGGCTCAGCATGTTGACGGCCAAAAAAGGGGACACTACAGCAAACATGCTGCTCGCTTTAGTGTGTGATCCAGATCTTCAGCTGCCAGACACAACTAACGACACCAAATCATCAATTAATAAGCTGCAGAGTCTGCAGGCGGACTATCTGGATGCAGCATCTGCTCTGCTGTTTGAGGTGGTTGTGCTATGTCAGGAGGCAAGTCGCACACCTGCTCTGGGACATTTCCTTACCATTGGCTGGGTGTTTCGATTGCTTAAACCACATCCATTCTTACTCCCATTTGTTGGATATCAGGCCCAACAGACGGTTCTGGTTCTCTCAGGCCCGCAGTTTCCCATCAGCCCCTCTCAGGCGGTTCTTCTGTACCAGCGATGCTGTGTTTTATTAGCCTGTCTGCAGCACAGCCCCTGTTTGAGCAAATACATCAGGACAGGATTCAAGGAGGAGTTCAGGTACTATGTGAAGACTGCAGATCTGGAGGACAAACTTCCCGATCACTATCCCATCAGTCAACCTGCCCAGCGGCTTCTTTCTCAACTCCTCAGTGTGGTCCTAGAGAGACCCTGAGCTGATTCTCCAGCATCTCTGCTAAATTTCTGATGTGCAAATATGCCTTTGGATGTCTATGCTGCACTTTATGACTGAATTAAACTCTTGTATGGTGTCTTACTGTGTGTTGAACAGAGACTGCAGGACTACACTCTGTTTAGCATATCGCCTTTGTCTACTCTCAGGATTGGATTTACTTTATTATGTGTATAAGAATTAATGGGAAGTCATCGCAGAGCGCCATGTATGGAACTATTTGTTATTGTGTGTGATAATAAAATGAACATATTGCACTTCTCAGTTGACACATTAGCACTCTAATGTATTAGATTGATCACAGTATTATGAATATTCATATAAATTACACTTTACTGTATAAATGCACTTCTTTACTCTGGTCTGGTATTATGTTTGgatgctctctctctctataaGACTGTACTGTTTTCAGGAACTCGGTGTACCTCAAGgcctcaaaaat
>TCONS_00055234
ATTCCCATGGCCAGAACCAGCGCGGACGGGCAGAATAACAGCAAACTGGACTCTTTCCTGAAGAGAAACACCAGTCGGGATGTGTACGAGCGGATCCGAGTGTCCGAGCCGTGTGTGGTGGTGTCGGGATCGGTCAAGAAGGTGTTCATGCATGTGATTTTGAGCGACGAGTGCGTGTATTTGAGCGAGTATCACCCGCGCGCGCTGCGAGAGGCGCTCAGTTTCAGACACATCACGAGCATCGAGCTGATCAATGATTTGCCTGATTTTCTGAGTGGACAGGACCGTGAGCGATCTCTGCACATCCGTGTTGTTTATACCACAAAGAATGCCGGGGAAAAGAGCGAGAGAACCAAAGGATCCAGCAAAATGACTGAATCTCCATCACGAGCATATAACTCAGCTgaagaagaagaggaagaagaggaaaGTGTGATTCCTAAAAGACGTTCGGCCTCCTGTCCAAACCCAGTAGTGCCGCATCTGTTTAATTCCTCCCCTGCTTCTCCTCTACCAAACATCAGCAATACTGAGCACAGATGGAGGAAAAGCCCTGAAGCGTTCAGTCACAGGGGTTCAGTCCTGAGCAGAGCCATAAGGAGAGCAACAACAACAGACAAGCAGAAGGGCGAGGAGAAAGAGGAAGAGCTGCACCTTTACGCCGTTTCTCCATCCTCACGAATATTCCTTCACCTCCAGAGCTCCTGGAGCAGCTACATCATAAGATCAACTTTGATGCTGGACCCAGTGTACATGAAGAAATGTGGCCTGTCCTCCTCTTCCCCTAAGAAACCGATAAATCATAAGATCAGCTGGGAACGGACGTGTCAGTTGTTCAGTCAGTTGAGCGGAGAGCTGCTCCAGGAAAACATCAGTCTGGAGAGTCTGTATTTACTGCTGCAGGAGCTGCGCACGGCCACATACCGAAACCCCACCATCAAAAAACTCTTCTGGAGGTTTTTGTGTAATTCATgctgtttctgtttatttTTTCTGCAACAGTATGAAGATAAAGACAATGTCTCTGTGTCCTGCAGGCTTTGCACTGTAGTGGTTCAGATATTAAGCCTGATGTTCAGGGAAACGGAGATCGAACCAAAGAGGCTCAGCATGTTGACGGCCAAAAAAGGGGACACTACAGCAAACATGCTGCTCGCTTTAGTGTGTGATCCAGATCTTCAGCTGCCAGACACAACTAACGACACCAAATCATCAATTAATAAGCTGCAGAGTCTGCAGGCGGACTATCTGGATGCAGCATCTGCTCTGCTGTTTGAGGTGGTTGTGCTATGTCAGGAGGCAAGTCGCACACCTGCTCTGGGACATTTCCTTACCATTGGCTGGGTGTTTCGATTGCTTAAACCACATCCATTCTTACTCCCATTTGTTGGATATCAGGCCCAACAGACGGTTCTGGTTCTCTCAGGCCCGCAGTTTCCCATCAGCCCCTCTCAGGCGGTTCTTCTGTACCAGCGATGCTGTGTTTTATTAGCCTGTCTGCAGCACAGCCCCTGTTTGAGCAAATACATCAGGACAGGATTCAAGGAGGAGTTCAGGTCCTTCATGAATCTGGAGGACAAACTTCCCGATCACTATCCCATCAGTCAACCTGCCCAGCGGCTTCTTTCTCAACTCCTCAGTGTGGTCCTAGAGAGACCCTGA

Function

symbol description
si:ch211-258f14.2 Orthologous to human C12orf56 (chromosome 12 open reading frame 56).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-151 Orthologous to human C12orf56 (chromosome 12 open reading frame 56).

Ensembl:

ensembl_id ENSDARG00000073963

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055233 False 2360 mRNA 0.47 12 4758001 4780667
TCONS_00055234 True 1662 mRNA 0.50 12 4758464 4780510

Neighbor

gene id symbol gene type direction distance location
XLOC_028456 ssbp1 coding downstream 1652 4752622 ~ 4756349 (-)
XLOC_028455 creb3l2 coding downstream 6018 4712410 ~ 4751983 (-)
XLOC_028454 DGKI coding downstream 51108 4626794 ~ 4706893 (-)
XLOC_028453 CABZ01020840.1 coding downstream 145885 4601815 ~ 4612116 (-)
XLOC_028452 rassf3 coding downstream 165714 4540223 ~ 4592287 (-)
XLOC_028458 zgc:162331 coding upstream 2054 4782721 ~ 4795205 (-)
XLOC_028459 coa6 coding upstream 51477 4832144 ~ 4834617 (-)
XLOC_028460 ndufa5 coding upstream 149739 4930406 ~ 4932619 (-)
XLOC_028461 NA coding upstream 159800 4940467 ~ 4962892 (-)
XLOC_028462 NA coding upstream 182290 4962957 ~ 4967711 (-)
XLOC_028450 FP102892.1 non-coding downstream 241493 4514438 ~ 4516508 (-)
XLOC_028446 CU468826.1 non-coding downstream 383297 4321168 ~ 4374704 (-)
XLOC_028443 NA non-coding downstream 528846 4178834 ~ 4229155 (-)
XLOC_028444 NA non-coding downstream 547537 4207590 ~ 4210464 (-)
XLOC_028442 NA non-coding downstream 594125 4162825 ~ 4163876 (-)
XLOC_028471 NA non-coding upstream 641079 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 647651 5428318 ~ 5441954 (-)
XLOC_028474 NA non-coding upstream 764335 5545002 ~ 5553182 (-)

Expression


Co-expression Network