LOC110536328 (LOC106580568)


Basic Information

Item Value
gene id LOC110536328
gene name LOC106580568
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69974888 ~ 69983058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622063.2
TGAAATGACAGGCTGTCATCACGGATGACATAAAATGAAGAAGAACGAAGCCGATGCCCCCCCCAGGTCATTCGCATACATAGGACACCCTCTAAGTAAAACTAGCTCGTCTTTGCAGGTGGTGGAGGACAAGTCACATTCTCCCGTTAGAGATGTTATCCGTGCGAGTTGCAGCGGCTCTGGCCAGAAGCCTGCCCAGACGGGCTGGATTTGTGTCCAAGAATGTTGCCGCCGCCAGTGTAGGAGTGAATCACCTTCATACACACAGACCATGTCTTGCTGCAAAGACTGGCACGGCTGAGGTGTCCTCAATCTTGGAGGAGAAGATCCTTGGGGCTGACACAAGTGCTGATCTGGAGGAGACTGGCCGTGTGCTCTCCATCGGTGATGGTATTGCCAGAGTGTACGGTCTCAGGAATGTTCAGGCTGAGGAGATGGTGGAGTTCTCCTCTGGGCTAAAGGGTATGTCTCTGAACTTGGAGCCTGACAATGTTGGTGTCGTGGTGTTCGGTAATGACAAGCTGATCAAAGAGGGTGACATCGTGAAGAGGACTGGTGCCATCGTGGACGTGCCAGTTGGTGAAGAGTTGCTGGGTCGCGTGGTGGATGCATTGGGCAATGCCATCGATGGAAAGGGTCCTCTTGGGTCTAGCATCCGTAGGCGTGTGGGTCTGAAGGCCCCTGGCATCATCCCCCGTATCTCTGTGAAGGAACCGATGCAGACTGGCATCAAGGCCGTGGACAGCCTGGTGCCCATTGGGCGTGGCCAGCGTGAGCTGATCATCGGTGACCGGCAGACTGGCAAAACCGCTATTGCCATTGACACCATCATCAACCAGCGACGTTTCAACGAAGGCAAAGATGAGAAGAAGAAGCTGTACTGTATCTACGTTGCCATTGGCCAGAAGAGATCCACTGTGGCGCAGCTGGTGAAGAGGTTGACTGATGCTGATGCTATGAAGTACACCATTGTGGTTTCTGCTACAGCCTCTGATGCTGCTCCCCTGCAGTACTTGGCCCCCTACTCAGGCTGCTCCATGGGAGAGTTCTTCAGGGACAATGGCAAGCATGGCCTCATCATCTATGATGATTTATCCAAGCAGGCTGTAGCCTACCGTCAGATGTCCCTGCTGCTGCGTCGTCCCCCCGGTCGTGAGGCCTACCCCGGTGATGTGTTCTACCTGCACTCCCGTCTGCTGGAGAGAGCCGCCAAGATGCACGACAACTTTGGCGGCGGCTCCCTGACCGCTCTGCCCGTCATTGAGACCCAGGCCGGAGACGTGTCTGCTTACATCCCCACCAACGTCATCTCAATCACTGATGGACAGATCTTCTTGGAGACTGAGTTGTTCTACAAAGGTATCCGCCCAGCCATCaacgtgggtctgtctgtgtCCAGAGTTGGATCAGCTGCCCAGACCAAGGCCATGAAGCAGGTGGCTGGTACCATGAAGTTGGAGCTGGCCCAGTACCGTGAGGTCGCTGCTTTCGCCCAGTTTGGCTCCGACCTGGACGCTGCCACCCAGCAGCTGCTCAACAGGGGCGTCCGTCTCACCGAGCTGCTTAAGCAGGGACAGTACTGCCCAATGGCCATTGAGGAGCAGGTGACCGTCATCTACGCCGGAGTCAGAGGTCACTTGGACAAGATGGACCCTTCCAAGATCACCAGGTTTGAGAAGGCCTTCCTTGGGCACGTCCTCAGCCAACACCAGGACCTGCTCACCACAATCAGGACTGATGGCATGATCTCACCTACAGCTGATGCCAAACTGAAGGAGATTGTGTTGACCTTCCTCTCCAGCTTTGAATAATGTGTGAAACTGCTCCTGGTCCTTCAGTGTGCTTGCTACCTGTCTTGGCCCCCGTTGTCCTGAACCTCCATGTTGGCCAGTACCTCCATGTACAGATTTCTCCAAAGAATAAATAAAATTTTACAACCCTGGAGAGCTGTGGTAAAATGTGACTTTATGGTAGGGTGTGCAGGTCCAGCAGATTTTTTTACTTGGAAGGGTATAAATGATCATGTGAGAAATAAAGGAGAATCCCTGCATTCTGTTCTGTTGCAGTGATGTTTCACCCACTTGGTCTAAATATACTAAAACTACCctaaatacagtatcttaacTTCGTTCATGAATTTCACTTTCATCTTGTCAGAATAAAAACAGGGTGGTCTCAAAATATATTGATTTAACAGGACATGAATTGTCATTCTTGCACCTCGTGAAAAATGCAGCACATTCAGTCAAACATGGCGCATTTCAAAATTGATTGAAATAAATCTATGGGTTTGAA

Function

NR:

description
ATP synthase subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0005524 ATP binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02132 ATPeF1A, ATP5A1, ATP1; F-type H+-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622063.2 True 2295 mRNA 0.52 11 69974888 69983058

Neighbor

gene id symbol gene type direction distance location
LOC110536320 LOC106585172 coding downstream 76722 69895616 ~ 69898166 (-)
LOC110536318 LOC106580577 coding downstream 82806 69847223 ~ 69892082 (-)
LOC110535106 LOC106580600 coding downstream 151603 69821531 ~ 69823285 (-)
LOC110536317 LOC106580578 coding downstream 168943 69791411 ~ 69805945 (-)
LOC110536316 aebp1 coding downstream 204759 69738194 ~ 69770129 (-)
LOC110536645 NA coding upstream 13270 69996328 ~ 69999946 (-)
LOC110536332 LOC106580566 coding upstream 43150 70026208 ~ 70030420 (-)
smyd1b smyd1b coding upstream 117064 70100122 ~ 70113042 (-)
LOC110536342 efna5 coding upstream 573951 70557009 ~ 70744135 (-)
LOC110536344 habp4 coding upstream 1425296 71408354 ~ 71411778 (-)
G1011740 NA non-coding downstream 2124 69972487 ~ 69972764 (-)
G1011739 NA non-coding downstream 2411 69972255 ~ 69972477 (-)
G1011738 NA non-coding downstream 3663 69969852 ~ 69971225 (-)
G1011730 NA non-coding downstream 18963 69955636 ~ 69955925 (-)
G1011721 NA non-coding downstream 31652 69942999 ~ 69943236 (-)
G1011750 NA non-coding upstream 18437 70001495 ~ 70013794 (-)
G1011751 NA non-coding upstream 32923 70015981 ~ 70016111 (-)
G1011765 NA non-coding upstream 71215 70054273 ~ 70054674 (-)
G1011772 NA non-coding upstream 92884 70075942 ~ 70082442 (-)
G1011850 LOC106580595 non-coding upstream 148467 70131525 ~ 70134544 (-)
G1011014 NA other downstream 668460 69305336 ~ 69306428 (-)
G1010922 NA other downstream 855402 69116507 ~ 69119486 (-)
G1010443 NA other downstream 1286926 68687257 ~ 68687962 (-)
G1009720 NA other downstream 2003560 67971071 ~ 67971328 (-)
G1007506 NA other downstream 3601939 66372642 ~ 66372949 (-)
G1012814 NA other upstream 901418 70884476 ~ 70890991 (-)
G1013669 NA other upstream 1514250 71497308 ~ 71515434 (-)
G1013960 NA other upstream 2013023 71996081 ~ 71996688 (-)
G1014411 NA other upstream 2376227 72359285 ~ 72359505 (-)
G1014639 NA other upstream 2463596 72446654 ~ 72449340 (-)

Expression


Co-expression Network