LOC110536645


Basic Information

Item Value
gene id LOC110536645
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69996328 ~ 69999946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034807.1
ctgacttcaactgtatatggccaatataccacggctaagggctgtatccaggaacTCCGCGTTGCGCCGTGcagaagaacagcccttagccgtggaataTTGGCCATATTCCACACCCGTCGTACCTTATTGCTTAAACATACCACGgcttttagccaatcagcattcatgcCAGCTGCCAACTTAGCCTCGAGAGATAGGAACAGCGCCTGTCGAGGCCACTGCCACAACTCTGTCCAGAAAAAGGAGGAGTATAATTACAGTATAATTTTCTTCTCCCATGCTTGTGCCTAGCGTTTGTTAACTTCTGTCTTCATGCATCTGTTTCAGGACTTTCATCATGACTACATGGAAGTTGATGGAAATATTTAGgagGCACAGGCACAGATGCCAACTTGTTCCAGATAGTATTTGGGAATTACAGGGACACTGGTACGCTGGCACTGAAGGAGGGCGGTAGCAGATACAAGTTTGAGTGAAAGTCGAAATATGTGTTCCGCTTCCCAGACATCCTCATCTTGGGAGAGTAGTCCAAGATCCGCGTGTGGCGCGACAACAAGGGTCCTGCCCCATGTTGGCACCTGGAGTACATCAATGTGATAGATGAGACCATGGTCCAGAATTTCCGTTTCCCATGTGACCCCTGGCTGGCCAAGCATGTCGACGACAGGCGATCATGAGAGAGCTGGCCTGCGCCAACAACTACATCCTGGACTTCAGTGACAAGACCAATGAGTTAACCTCTGACCCTGATGTAGGCTAGTGATGACATGACCAAAGATGTTATATGAATGAAaatgtcccactgggcacagttGTCAGTTCAATGCCtcgttttgatttacatttgtttgtcaactaacgtgaattcaacatgaaatcccTCCCAaaattcaccatgtcattggatttaggttaaaagttggacaaaaaaaagacaaaatgcCCTAACATGACTTTTTGCTAATCCAATTAGTTTTACAAGTTGATTCAATGTTGGGGTGAAGTggtgtggaaacaatgttgaatCAACCAGTTTATTCCCATTGGGGTACCACTCAGACCGTTTACTATTGAACAACAATTGTCTGCTCCCCCCCCGCTCCTTGAAaacagcagctctaccctttagctcagtctgaatgttgcctgtaatccatggtttctggttgcggtatgtacatacagtcaatGTGGGGAC

Function

NR:

description
PREDICTED: lipoxygenase homology domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034807.1 True 1201 mRNA 0.46 3 69996328 69999946

Neighbor

gene id symbol gene type direction distance location
LOC110536328 LOC106580568 coding downstream 13270 69974888 ~ 69983058 (-)
LOC110536320 LOC106585172 coding downstream 98162 69895616 ~ 69898166 (-)
LOC110536318 LOC106580577 coding downstream 104246 69847223 ~ 69892082 (-)
LOC110535106 LOC106580600 coding downstream 173043 69821531 ~ 69823285 (-)
LOC110536317 LOC106580578 coding downstream 190383 69791411 ~ 69805945 (-)
LOC110536332 LOC106580566 coding upstream 26262 70026208 ~ 70030420 (-)
smyd1b smyd1b coding upstream 100176 70100122 ~ 70113042 (-)
LOC110536342 efna5 coding upstream 557063 70557009 ~ 70744135 (-)
LOC110536344 habp4 coding upstream 1408408 71408354 ~ 71411778 (-)
LOC110536346 slc35d2 coding upstream 1431892 71431838 ~ 71442390 (-)
G1011740 NA non-coding downstream 23564 69972487 ~ 69972764 (-)
G1011739 NA non-coding downstream 23851 69972255 ~ 69972477 (-)
G1011738 NA non-coding downstream 25103 69969852 ~ 69971225 (-)
G1011730 NA non-coding downstream 40403 69955636 ~ 69955925 (-)
G1011721 NA non-coding downstream 53092 69942999 ~ 69943236 (-)
G1011750 NA non-coding upstream 1549 70001495 ~ 70013794 (-)
G1011751 NA non-coding upstream 16035 70015981 ~ 70016111 (-)
G1011765 NA non-coding upstream 54327 70054273 ~ 70054674 (-)
G1011772 NA non-coding upstream 75996 70075942 ~ 70082442 (-)
G1011850 LOC106580595 non-coding upstream 131579 70131525 ~ 70134544 (-)
G1011014 NA other downstream 689900 69305336 ~ 69306428 (-)
G1010922 NA other downstream 876842 69116507 ~ 69119486 (-)
G1010443 NA other downstream 1308366 68687257 ~ 68687962 (-)
G1009720 NA other downstream 2025000 67971071 ~ 67971328 (-)
G1007506 NA other downstream 3623379 66372642 ~ 66372949 (-)
G1012814 NA other upstream 884530 70884476 ~ 70890991 (-)
G1013669 NA other upstream 1497362 71497308 ~ 71515434 (-)
G1013960 NA other upstream 1996135 71996081 ~ 71996688 (-)
G1014411 NA other upstream 2359339 72359285 ~ 72359505 (-)
G1014639 NA other upstream 2446708 72446654 ~ 72449340 (-)

Expression


Co-expression Network