LOC110536331 (LOC106580567)


Basic Information

Item Value
gene id LOC110536331
gene name LOC106580567
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 70001416 ~ 70009325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622068.2
CTCTTGTGTCGCTACAGCATACCAGTTTGCTGCACCGGAATAAGTACGGACTGAATTTACTGCAACTCAATACCCTTTTCCGTCCTCTATCGTGTCTACTTCGGCAAGAAGATGACGAAGGGAACGTCATCATTTGGTAAACGTCGCAACAAGACGCATGCCCTGTGTCGTCGGTGCGGCTCCAAGGCATACCACCTTCAAAAGTCCTCTTGCGGAAAGTGTGGCTACCCCGAAAAGCGCAAGAGAAAGTATAACTGGAGTGCCAAGGCCAAGAGACGCAACACCACCGGTTCTGGCCGTATCAGACACCTGAGGGTTGTCTACCGCAGATTCAGGAATGGATTCCGTGAGGGAACTGTCCCCAAGCCCAAGAGAGCAGCAgtggctgcctccagctcttcttagACTCTGAGTCTGAAATAAAGTCATCATAAAATGACAA
>TU1150633
AATTTACTGCAACTCAATACCCTTTTCCGTCCTCTATCGTGTCTACTTCGGCAAGAAGATGACGAAGGGAACGTCATCATTTGGTAAACGTCGCAACAAGACGCATGCCCTGTGTCGTCGGTGCGGCTCCAAGGCATACCACCTTCAAAAGTCCTCTTGCGGAAAGTGTGGCTACCCCGAAAAGCGCAAGAGAAAGTATAACTGGAGTGCCAAGGCCAAGAGACGCAACACCACCGGTTCTGGCCGTATCAGACACCTGAGGGTTGTCTACCGCAGATTCAGGAATGGATTCCGTGAGGGAACTGTCCCCAAGCCCAAGAGAGCAGCAgtggctgcctccagctcttcttagACTCTGAGTCTGAAATAAAGTCATCATAAAATGACAACTTCA

Function

NR:

description
60S ribosomal protein L37-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622068.2 False 442 mRNA 0.50 4 70001416 70009320
TU1150633 True 394 TUCP 0.50 4 70001469 70009325

Neighbor

gene id symbol gene type direction distance location
LOC110536329 LOC106580569 coding upstream 5600 69983168 ~ 69995816 (+)
LOC110536327 LOC106580570 coding upstream 29600 69956531 ~ 69971816 (+)
LOC110536326 LOC106580571 coding upstream 48763 69944662 ~ 69952653 (+)
rnf122 LOC106580572 coding upstream 64997 69917694 ~ 69936419 (+)
LOC110536323 LOC106580573 coding upstream 84338 69904948 ~ 69917078 (+)
trnal-caa-3 NA coding downstream 34155 70043475 ~ 70043586 (+)
trnal-caa-4 NA coding downstream 34617 70043937 ~ 70044048 (+)
trnal-caa-5 NA coding downstream 35048 70044368 ~ 70044479 (+)
trnal-caa-6 NA coding downstream 35500 70044820 ~ 70044931 (+)
trnal-caa-7 NA coding downstream 35941 70045261 ~ 70045372 (+)
G1011526 NA non-coding upstream 1876 69999211 ~ 69999540 (+)
G1011519 NA non-coding upstream 23904 69977178 ~ 69977512 (+)
G1011509 LOC106580568 non-coding upstream 24818 69974896 ~ 69976598 (+)
G1011518 NA non-coding upstream 27312 69973877 ~ 69974104 (+)
G1011528 NA non-coding downstream 4826 70014146 ~ 70014995 (+)
trnal-caa-28 NA non-coding downstream 47684 70056987 ~ 70057327 (+)
G1011540 NA non-coding downstream 48220 70057540 ~ 70062206 (+)
trnal-caa-99 NA non-coding downstream 82363 70091666 ~ 70091961 (+)
G1011550 NA non-coding downstream 86847 70096167 ~ 70096457 (+)
sb:cb288 NA other upstream 290083 69705334 ~ 69711411 (+)
G1011336 NA other upstream 367540 69633501 ~ 69633876 (+)
LOC110536300 LOC106580593 other upstream 601182 69398535 ~ 69400234 (+)
LOC110535101 LOC106580561 other upstream 1176416 68687221 ~ 68847333 (+)
G1011531 NA other downstream 9783 70019103 ~ 70019906 (+)
LOC110536338 LOC106580595 other downstream 119962 70128401 ~ 70134490 (+)
G1012975 NA other downstream 1034939 71044259 ~ 71044604 (+)
G1013375 LOC106580618 other downstream 1464106 71473426 ~ 71474631 (+)
LOC110536353 LOC106580623 other downstream 1786108 71738585 ~ 71797315 (+)

Expression


Co-expression Network