LOC110536332 (LOC106580566)


Basic Information

Item Value
gene id LOC110536332
gene name LOC106580566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 70026208 ~ 70030420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936243.1
GAACTGTAGATTACACAGGCAGACGAGTGAGCATGACTTTTAAACATGGATCAGTCATTTGTAAACGTCAATGGACAGGGGATAAGACAATGACGTCGACGGGTTACAGATACTTGGACAAAATCAACTGAACAACGAAACAACAGTTTTAAAGGCGTTCTAACTTCTGTTGTGAATATGTTGATTCAGCTCACATTCAGGATGAAGATTTCAATCATGTTTGATACGCTTCACTTTTGTAGATACCATGCCTAATGCATCTACTGTATTTCTTATTGGGAAATATTAACGACAGCCTATAATGCAACTAAATATTTGTTTAAAATGAGTAACAACACTGTGACCGGGAGGATCATGATCCCGACTATACCGTCCATCATGTTTATTTTCGGTGTGGTGGGAAATGTCATTGCCATCGTGGTACTCTGCAAATCCAGGAAAGAACAGAAGGAGACCACGTTCTACACGCTGGTATGCGGTCTGGCGGTTACAGACCTTTTGGGGACACTCCTAGCCAGTCCCGTCACCATCGCAACCTATGTGAAAGGCTCGTGGCCAGGCGGGGAGCCACTGTGCCAGTATTTTGGATTCATCATGCTTTTCTTCTCTCTAGCGGGGCTCAGCATTATATGCGCTATGTCCGTGGAGAGATACTTGGCGATAAACCACGCGTATTTCTACAACGACTATGTGGATCAGAGACTGGCGGGCATGACGCTTCTGGCTATTTACATCTCCAACGTGCTTTTCTGCGCTCTACCTAGCATGGGTCTGGGACAAGTCAAAAAGCAGTACCCACAAACCTGGTGCTTCATAGAGTGGCGGAGCAACGTGAGTACCGATGCCGCCTTTTCATATATGTACGCGGGGTTCAGTTCGATTCTAATTCTAGCCACAGTTATCTGTAACGTTCTGGTATGCGGTGCTCTGATTCGAATGCACCGGCGGTTTGTCCGGAAGATGTCATTGTGGACAGACCCCGGACGAAACACAGAACCGAGAAGGAGACGCAGCTTCGGGCATCTGGCCGGCGCAGAGATCCAGATGGTGATTGTACTCATTTGTACCTCAGCGGTGGTGCTTATATGCTCCATTCCACTTGTTGTGCAAGTGTTTCTGAACCAGATTTATAAGACTCCGGTGGAGCTGAGACTGGAGAAGAACCCAGATCTACGGGCGATCCGCTTCGCCTCATTCAACCCCATCCTGGACCCCTGGATCTACATCCTCCTCCGCAAGGCCGTGCTCCTCAAGCTCATTGAGCAGATCAAGTGTCTGTTCTGTAAGATAGGAgcacagagacagcagagacagggaGCACAGAACTGCCACTGCATTGATGAACACCAGCTCCACTCCATCATCTCTTCACAAGAGTTCCCGTCATTGGTGTCCCGTGAGCTGAAGGAGGTGTCCAGCACCTCTCAGGTCGTCCTCTACCTTCCTGATGGAAGCTGTCATCACACAGGAGAGCAGGTTGGGCTCCGCAATTCCTCTGTCCAAGACCCCCAAAGTTCTTATTTGTCAGAACAGAGTacagaggatgggaggaggatgggaggagagaggtgacaaACCTAACCAGGGACCCCTCTGGTGTGGGAGGACAGACCACTCAGTCATGTGTGAAAGAACAGGCTCTTCATGTGTTGCTAAGTAATGAGACGGTACAGGAGAAATGCATATAGATCTTGTGTATTTGGAATCCCATGAACGGTTACTTCAACTAAGACTCCTCATATTATTGTGAAGTTTCTGTGAGTCAGAGGGATGTCCACACATACATTGACAACACTGCCTTCAGACTGCCAAAGATGGCTTTTCAGACAGCTTCTGCTCTCCTAAGGGACTTATTCGGTTAGCGGAAGTGTTAGTGCCAACAGAAATAGATTGGCTCCCAGGATGACTCATTTGACATCCTCTAAAGACAAGGAATGGCACATTTAAACAATGTTGAAAAGCTTTTGGTAAGCCAGACAGGAGGAAGGACAAACAAGAGAGAGacaactgtgagagagagagaggatgtctGCTCCACTTTGATGTCAAGCTACCTCGACCAGAAACatcaatgtttgtttgtttttcctgTCTTCTCGCACAGGTCAGAGAGCAAGGCAGTAAGAGCAGAGCAGCTTCTCCATGGCCTAAAGGGGCATTGGCTGTACACTGTAGCTAAACAGTTTAACACTAGCTTCTTTCAATCATTGTAAAAACTGTGAGTTAGTATTTAGAGTATTTAAGCTACAATGATTGAGATGTACAGAATAGTTATTTCGATTCATTGAAAGGAATGTAGTATAGGGCCTGTCATTACGTGCCAAACTGCCATGAAACCAAGGAAAAGTCAGTTCTCACAAAACGATATGTCTGTAGAAGGTTTGCTGTTCAGAGATACACTTCACTTGACTGTTTTGCATCACATAATAGCTTTAGAGAGTTAATGTATAGTGCAGTATTGTCTGTAATTTGCCAAACTCTGTATATGTATTTCTATTACTCTGGTATCAGTTTTTGAACGTTTATCAGATTATCAGTAATTCACCTAAGTATTGTCATTGTCATTATTTAGTGATTTACGCAATCAGCCTGGTCTCATGTATACTAGTATACATAAACCAGGGACACCAGATTAGTATGacatgttatgtttggtatgattacataagacagaaggttacttaaggaaAAATGAAAGGAGGGCGGTTAGTTGGCGGTGTATAAAGCAAACGTCTAGCGCGAACGTCTAGCGCGAACGTCTAGCGCGAACGTCTAGCGCGAACGTCTAGCGCGAACGTCTAGCG

Function

NR:

description
prostaglandin E2 receptor EP4 subtype-like

GO: NA

KEGG:

id description
K04261 PTGER4; prostaglandin E receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936243.1 True 2804 mRNA 0.45 2 70026208 70030420

Neighbor

gene id symbol gene type direction distance location
LOC110536645 NA coding downstream 26262 69996328 ~ 69999946 (-)
LOC110536328 LOC106580568 coding downstream 43150 69974888 ~ 69983058 (-)
LOC110536320 LOC106585172 coding downstream 128042 69895616 ~ 69898166 (-)
LOC110536318 LOC106580577 coding downstream 134126 69847223 ~ 69892082 (-)
LOC110535106 LOC106580600 coding downstream 202923 69821531 ~ 69823285 (-)
smyd1b smyd1b coding upstream 69702 70100122 ~ 70113042 (-)
LOC110536342 efna5 coding upstream 526589 70557009 ~ 70744135 (-)
LOC110536344 habp4 coding upstream 1377934 71408354 ~ 71411778 (-)
LOC110536346 slc35d2 coding upstream 1401418 71431838 ~ 71442390 (-)
LOC110536347 NA coding upstream 1415327 71445747 ~ 71452891 (-)
G1011751 NA non-coding downstream 10097 70015981 ~ 70016111 (-)
G1011750 NA non-coding downstream 12414 70001495 ~ 70013794 (-)
G1011740 NA non-coding downstream 53444 69972487 ~ 69972764 (-)
G1011739 NA non-coding downstream 53731 69972255 ~ 69972477 (-)
G1011738 NA non-coding downstream 54983 69969852 ~ 69971225 (-)
G1011765 NA non-coding upstream 23853 70054273 ~ 70054674 (-)
G1011772 NA non-coding upstream 45522 70075942 ~ 70082442 (-)
G1011850 LOC106580595 non-coding upstream 101105 70131525 ~ 70134544 (-)
G1011860 NA non-coding upstream 117298 70147718 ~ 70147948 (-)
G1011861 NA non-coding upstream 118498 70148918 ~ 70149145 (-)
G1011014 NA other downstream 719780 69305336 ~ 69306428 (-)
G1010922 NA other downstream 906722 69116507 ~ 69119486 (-)
G1010443 NA other downstream 1338246 68687257 ~ 68687962 (-)
G1009720 NA other downstream 2054880 67971071 ~ 67971328 (-)
G1007506 NA other downstream 3653259 66372642 ~ 66372949 (-)
G1012814 NA other upstream 854056 70884476 ~ 70890991 (-)
G1013669 NA other upstream 1466888 71497308 ~ 71515434 (-)
G1013960 NA other upstream 1965661 71996081 ~ 71996688 (-)
G1014411 NA other upstream 2328865 72359285 ~ 72359505 (-)
G1014639 NA other upstream 2416234 72446654 ~ 72449340 (-)

Expression


Co-expression Network