XLOC_028458 (zgc:162331)


Basic Information

Item Value
gene id XLOC_028458
gene name zgc:162331
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4782721 ~ 4795205 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055235
GCAGTGGAGCTGCAGCAGCGACAAGAGGCTTACAGAGGAGAAACACACAGctgctctctctctcctctctctctctctctctctctctctctctctctcggagGCTGAGAGAGTCTCTGGAGTCACCGGCGGACATGACCGACTGACATTCAcactttctttcttcctttcaaGCCCAGTTTTCGATGGCTCTGAGAGAGAGTTTTCTCACCTGGATCTTCCTGCTGTGCTCTCTGACATGGAGCTTGGTTTGGACTTTCACCACACACGCAGACCCTTCGGCGAGTCCTAGATTTCATCGAAGCACTTCACCTGCCACTGAGACGGGGACGAACAGCACCGAGGCTCCTACCAACAATTATACAGGCCTGAGCTGTGAGTCTCTGCTGCCCCCTCGGCGAGGTTCTTTCTATGTGGAGAAGGGCACTGGAATGTCTTTGGGCACTGTGCTGGCGTTCTGGTGCCTCGAGGGATACCAGCTGGTGGGCAGTGAGAAAATCACTTGCGTCCTGCGCAGCGGCAATGCTCAGTGGAGCAATTACCCACCCGACTGCGAGGCCATTCCCAAACCAGAGGACCGTGGGCTGAGAGTGGCTGTGCTGGCATCGGTAGTGAGCAGCATCGTCATCCTTGCCATGTCCGTGTCCTTCATCATCTGCTGCCTGCAGGAGCGCATGAGCAAAGAGAGAGCGGAGCGGACAGACGGACGGCGCAGGACGAGAGACAAGCGCAAATCATCCTGGAGGACTGAGTGCTGGCTGGAGCGCGAGGAAGGAGACTGGGAAGCATTTCCACCTCCTAAAATTTATAATCTTTCCCAGCACCTTGACCCCCATCTGAGCCCAGAGAGCCCGGTTTATATGGGAGGACTGGCTGGTTATGATAACCGAGGATATCAGAGGAGTCAGGAAAACCTCCTAAAAGCTCCTCTTCCAGGTCTTTACCGTACGGAGAGTCAGATGTACCCACATGTAGTCCTGCAGAGGGTCCCGACACCCACCGTCCCAACAGCACCCACTGCACCCGTCTACCTCCGCCTCTCCACCCCTCCACCCACAGACAACCCCAGCAGTCAAAACGCCCTGCCGCCATACCCCAGTGCCGCCCCACCGCGTCTGTGGCCATAACAACACACTTTTGAGCATTCACAACTTTTACAGCTGTGCTATGGAGACGGATTACGACCCTGACACCCAAAAACAGCTCCTGTAGAGAGACTGTGGGCTTCAGAAACACTACAGAAATGATGGAGTTCAGTAAGACCACTGCACAGGCATTGGGCCACGTGTGGGTTTCTGTGTAGTTGCACTTTACCTGTAAAGGAGTAAAGGTTTCTCGGAGAGTAAAGTTAGGAGAGGCGAGGACTCTGGTACTGTGATCTgcattttcagaattttttttttttttttgtggcagagACTATTAGCACTCATCAGAGAAATcataatgcactaaaataaattattaaaatccaGGTGACATTACAGTATCATTTTTATAtgtttgagtttttctttttttttttaagtaatatagAAGTATGACATTAATGTCCTGGTTATAGACAGATGCTGGGATCTCATTAACCATTTATTCTTATAACttgattttatttcaaataaaaagattcaaatgaA

Function

symbol description
zgc:162331 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SUSD3 (sushi domain containing 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-75 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SUSD3 (sushi domain containing 3).

Ensembl:

ensembl_id ENSDARG00000069607

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055235 True 1637 mRNA 0.50 5 4782721 4795205

Neighbor

gene id symbol gene type direction distance location
XLOC_028457 si:ch211-258f14.2 coding downstream 2054 4758001 ~ 4780667 (-)
XLOC_028456 ssbp1 coding downstream 26372 4752622 ~ 4756349 (-)
XLOC_028455 creb3l2 coding downstream 30738 4712410 ~ 4751983 (-)
XLOC_028454 DGKI coding downstream 75828 4626794 ~ 4706893 (-)
XLOC_028453 CABZ01020840.1 coding downstream 170605 4601815 ~ 4612116 (-)
XLOC_028459 coa6 coding upstream 36939 4832144 ~ 4834617 (-)
XLOC_028460 ndufa5 coding upstream 135201 4930406 ~ 4932619 (-)
XLOC_028461 NA coding upstream 145262 4940467 ~ 4962892 (-)
XLOC_028462 NA coding upstream 167752 4962957 ~ 4967711 (-)
XLOC_028463 strip2 coding upstream 175837 4971042 ~ 5019113 (-)
XLOC_028450 FP102892.1 non-coding downstream 266213 4514438 ~ 4516508 (-)
XLOC_028446 CU468826.1 non-coding downstream 408017 4321168 ~ 4374704 (-)
XLOC_028443 NA non-coding downstream 553566 4178834 ~ 4229155 (-)
XLOC_028444 NA non-coding downstream 572257 4207590 ~ 4210464 (-)
XLOC_028442 NA non-coding downstream 618845 4162825 ~ 4163876 (-)
XLOC_028471 NA non-coding upstream 626541 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 633113 5428318 ~ 5441954 (-)
XLOC_028474 NA non-coding upstream 749797 5545002 ~ 5553182 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_01433027_01434982 NA coding CI01000066 null 1433027 ~ 1435523 (+)