XLOC_028459 (coa6)


Basic Information

Item Value
gene id XLOC_028459
gene name coa6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4832144 ~ 4834617 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055236
ACTGACAGAACTAACCTTTACGCAATTGCTTGGGTCATCAGCAGGCGACGTGTAGTTGCATTTCTTCCTACATGCTTAGGGCGTCCTTGGGATTCTGTGTACTTCAGCATGACTAATTAATATTAGTATATgagtttaatatatttacagaagTTCCATGAGGTGATTAATCGTACCTGATAGAGTGAGGAGAGACAGAGATGAGCGCTCCTAACGCCAGTCAGCGCAAAGCCTGCTGGGACGCAAGAGATGAGCTCTGGAAGTGTCTGGACGTCAACAAAGATCTCACTTCAGCCTGCGAGAAACACCAGCGAGAGTTTGAAGCCAACTGTCCTGCCCAGTGGGTGAAATATTTCTCTAAACGGAGGGACTTCTTAAAGTACAAGGAGAAAATCGAAAAGGAGGGCTATGAACCAACTGAAGGAGCATCAAAATTATAACCAGCGATGACGAGCTTCGGAGAAAACAAAACACTGGACTCTTGACTTCACATTGTTATTCTAATTTATGATCATTTATCCCAATGAGCCTGCatgttgtatgaatgtgtgaaaggcaaaataaagaaatgaaccaaaaa
>TCONS_00055237
AGATCCTCATATTCATGTTACTGGGATGTAGTTTGGACAGTGAGTGTTATGTATATACCTGCAGATAGAGTGAGGAGAGACAGAGATGAGCGCTCCTAACGCCAGTCAGCGCAAAGCCTGCTGGGACGCAAGAGATGAGCTCTGGAAGTGTCTGGACGTCAACAAAGATCTCACTTCAGCCTGCGAGAAACACCAGCGAGAGTTTGAAGCCAACTGTCCTGCCCAGTGGGTGAAATATTTCTCTAAACGGAGGGACTTCTTAAAGTACAAGGAGAAAATCGAAAAGGAGGGCTATGAACCAACTGAAGGAGCATCAAAATTATAACCAGCGATGACGAGCTTCGGAGAAAACAAAACACTGGACTCTTGACTTCACATTGTTATTCTAATTTATGATCATTTATCCCAATGAGCCTGCatgttgtatgaatgtgtgaaaggcaaaataaagaaatgaac

Function

symbol description
coa6 Acts upstream of or within heart development. Predicted to be located in mitochondrion. Predicted to be part of respiratory chain complex IV. Human ortholog(s) of this gene implicated in fatal infantile cardioencephalomyopathy due to cytochrome c oxidase deficiency 4. Orthologous to human COA6 (cytochrome c oxidase assembly factor 6).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0008535 respiratory chain complex IV assembly biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko04714 Thermogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-070705-152 Acts upstream of or within heart development. Predicted to be located in mitochondrion. Predicted to be part of respiratory chain complex IV. Human ortholog(s) of this gene implicated in fatal infantile cardioencephalomyopathy due to cytochrome c oxidase deficiency 4. Orthologous to human COA6 (cytochrome c oxidase assembly factor 6).

Ensembl:

ensembl_id ENSDARG00000092677

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055236 False 580 mRNA 0.43 3 4832144 4834617
TCONS_00055237 True 459 mRNA 0.44 2 4832150 4834347

Neighbor

gene id symbol gene type direction distance location
XLOC_028458 zgc:162331 coding downstream 36939 4782721 ~ 4795205 (-)
XLOC_028457 si:ch211-258f14.2 coding downstream 51477 4758001 ~ 4780667 (-)
XLOC_028456 ssbp1 coding downstream 75795 4752622 ~ 4756349 (-)
XLOC_028455 creb3l2 coding downstream 80161 4712410 ~ 4751983 (-)
XLOC_028454 DGKI coding downstream 125251 4626794 ~ 4706893 (-)
XLOC_028460 ndufa5 coding upstream 95789 4930406 ~ 4932619 (-)
XLOC_028461 NA coding upstream 105850 4940467 ~ 4962892 (-)
XLOC_028462 NA coding upstream 128340 4962957 ~ 4967711 (-)
XLOC_028463 strip2 coding upstream 136425 4971042 ~ 5019113 (-)
XLOC_028464 ahcyl2b coding upstream 191008 5025625 ~ 5092335 (-)
XLOC_028450 FP102892.1 non-coding downstream 315636 4514438 ~ 4516508 (-)
XLOC_028446 CU468826.1 non-coding downstream 457440 4321168 ~ 4374704 (-)
XLOC_028443 NA non-coding downstream 602989 4178834 ~ 4229155 (-)
XLOC_028444 NA non-coding downstream 621680 4207590 ~ 4210464 (-)
XLOC_028442 NA non-coding downstream 668268 4162825 ~ 4163876 (-)
XLOC_028471 NA non-coding upstream 587129 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 593701 5428318 ~ 5441954 (-)
XLOC_028474 NA non-coding upstream 710385 5545002 ~ 5553182 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 misc NC_056702.1 CM032071.1 1329452 ~ 1331843 (+)