trnal-caa-28


Basic Information

Item Value
gene id trnal-caa-28
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 70056987 ~ 70057327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnal-caa-28
gtcaggatggccgagtggtctaaggcgccagactcaagttctggtctccgattggaggcgagggttcaaatccctcttctgaca
>TU1150646
gtctaaggcgccagactcaaggtgagaatccttcctagttacaggggtattctggtctccgattggaggcgagggttcaaatccctcttctgacacagcttttgccttaaaaaagagtagctctttgtcaaaactgaaaaattctccaaatggtgaaaggaaaacacatgaacagtgattaatagtttgatagatgtcatagtttgagaacagaaaacacatgaaacgggaacatatgcctagtttagaattcaataagttactcaaattccattgaaaaatgttttttactatatctttcattagcttttaacatttttttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-caa-28 False 84 mRNA 0.56 2 70056987 70057098
TU1150646 True 324 lncRNA 0.36 1 70057004 70057327

Neighbor

gene id symbol gene type direction distance location
trnal-caa-27 NA coding upstream 321 70056555 ~ 70056666 (+)
trnal-caa-26 NA coding upstream 2864 70054012 ~ 70054123 (+)
trnal-caa-25 NA coding upstream 3327 70053549 ~ 70053660 (+)
trnal-caa-24 NA coding upstream 3790 70053086 ~ 70053197 (+)
trnal-caa-23 NA coding upstream 4246 70052630 ~ 70052741 (+)
trnal-caa-29 NA coding downstream 331 70057429 ~ 70057540 (+)
trnal-caa-30 NA coding downstream 1216 70058314 ~ 70058425 (+)
trnal-caa-31 NA coding downstream 1667 70058765 ~ 70058876 (+)
trnal-caa-32 NA coding downstream 2107 70059205 ~ 70059316 (+)
trnal-caa-33 NA coding downstream 2548 70059646 ~ 70059757 (+)
G1011528 NA non-coding upstream 41992 70014146 ~ 70014995 (+)
G1011526 NA non-coding upstream 57447 69999211 ~ 69999540 (+)
LOC110536329 LOC106580569 non-coding upstream 61184 69983168 ~ 69995816 (+)
G1011519 NA non-coding upstream 79475 69977178 ~ 69977512 (+)
G1011509 LOC106580568 non-coding upstream 80389 69974896 ~ 69976598 (+)
G1011540 NA non-coding downstream 442 70057540 ~ 70062206 (+)
trnal-caa-99 NA non-coding downstream 34585 70091666 ~ 70091961 (+)
G1011550 NA non-coding downstream 39069 70096167 ~ 70096457 (+)
G1011551 NA non-coding downstream 42910 70100008 ~ 70124758 (+)
LOC110536338 LOC106580595 non-coding downstream 71398 70128401 ~ 70134490 (+)
G1011531 NA other upstream 37081 70019103 ~ 70019906 (+)
LOC110536331 LOC106580567 other upstream 47662 70001416 ~ 70009325 (+)
LOC110536323 LOC106580573 other upstream 146740 69904948 ~ 69917078 (+)
sb:cb288 NA other upstream 345654 69705334 ~ 69711411 (+)
G1011336 NA other upstream 423111 69633501 ~ 69633876 (+)
G1012975 NA other downstream 987161 71044259 ~ 71044604 (+)
G1013375 LOC106580618 other downstream 1416328 71473426 ~ 71474631 (+)
LOC110536353 LOC106580623 other downstream 1738330 71738585 ~ 71797315 (+)
G1013617 NA other downstream 1781240 71838302 ~ 71840882 (+)

Expression


Co-expression Network