XLOC_028464 (ahcyl2b)


Basic Information

Item Value
gene id XLOC_028464
gene name ahcyl2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5025625 ~ 5092335 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055243
ttccagccgcagcTGTATCCTTTCTAGCAGCCACCTTAGCACACGGAACTACATGTCCCATGTTGCTTCGCGCAGCGCGTCATTCCACAGCGTAtccgttcgtgtgtgtgtgtcgctTCTCTGTATTGGAAAAAAGCACCGTGCGGATCGCAGCGATGTCAGTCCAAGCTGTGGCAACGAAAATGGCCGAGGTCGAATTAAAAGACGTGGCCGGTAAAGACTCTCCCCCTGCGATATCTCCGCTGACACCCAAGGCAGAGGAGAAGAAGACTGAAATAAACTCTTCGTCAACATCCATGGCAGCGGCCGCGGCGGTGGATCCGAGCCCGGTGACCGTCGCACCGAGCCCCATGAAGATGCCGCAGGCGTCCGCGATGAAGCGGACGGACCCGCAACAGAACGGCGGCGAGGCTTTTGTCAACTGTGACGGCACCGTGGCCGAGGGACCGAGAATGAAGAAGATTCAGTTTGCAGACCAGAAGCAAGAGTTCAACAAACGTCCCACCAAGATCGGCCGCAGGTCTTTGTCCCGCTCCATCTCACAATCTTCAACGGACAGTTACAGCTCAGCCGCTTCATACACTGACAGCTCCGATGACGAAACTTCTCCTCGCGACAAGCAGCAGAAAAACTCCAAAGGTAGCGGCGATTTCTGCATCAAGAACATCAAACAGGCCGACTTCGGGCGCAGGGAGATCGAGATTGCAGAACAAGAGATGCCTGCGCTCATGGCTTTGAGGAAGAGAGCTCAGGGAGAGAAGCCATTAGCTGGAGCCAAAATTGTTGGTTGCACCCACATCACTGCACAGACTGCTgtgtTAATGGAGACTCTCTCTGCTCTGGGGGCTCAGTGCCGATGGGCCGCCTGTAATATTTACTCCACCCAAAATGAGGTAGCAGCCGCTCTGGCAGAGGGAGGTTTCTCAGTGTTTGCTTGGAAGGGGGAATCGGAGGATGATTTCTGGTGGTGTATCGATCGCTGTGTTAACGTGGAGGGTTGGCAGCCTAATATGATTTTAGATGACGGAGGGGATTTGACCCACTGGATCTATAAGAAATATCCCAACATGTTCAAAAAGATCAAAGGCATCGTGGAGGAGAGCGTGACTGGAGTTCACAGGCTATACCAGCTGTCAAAAGCTGGCAAGTTGTGTGTGCCTGCGATGAACGTGAACGATTCAGTGACCAAGCAGAAGTTTGACAACCTGTACTGCTGCCGGGAGTCCATCTTGGACGGTCTAAAGAGGACCACTGATGTGATGTTTGGAGGGAAGCAGGTGGTGGTGTGTGGATACGGAGAGGTTGGGAAAGGCTGTAGTGCTGCTCTCAAAGCGATGGGATCAATCGTGTACGTCACTGAAATCGATCCCATCTGTGCCCTCCAGGCCTGCATGGATGGCTTCAGGCTGGTAAAACTCAGTGAAGTCATCAGACAAGTCGACATCGTCATCACCTGCACAGGCAATAAAAATGTGGTAGTAAGAGAGTACATGGACCGCATGAAGAACGGCTGTATCGTCTGCAACATGGGCCACTCCAACACTGAGATTGATGtgGCCAGTCTGCGAACTCCTGAACTGACCTGGGAGCGTGTAAGGTCGCAGGTGGACCATGTGATCTGGCCGGACGGGAAGAGAATAGTGCTGCTGGCAGAGGGTCGCCTCTTAAACCTGAGCTGCTCCACTGTTCCTACCTTTGTGCTGTCTATCACTGCTACAACCCAGGCTCTGGCTCTGATAGAGCTCTACAATGCTCCCGAGGGCCGCTACAAACAGGACGTCTACCTGCTGCCGAAGAAAATGGATGAGTATGTGGCCAGCCTTCATCTCCCTACATTTGATGCACACCTGACTGAACTGTCTGATGAACAGGCCAAATACCTCGGCCTCAACAAAAACGGACCCTTTAAGCCAAACTACTACAGGTACTAGACCCAAACTAAAGAAGACTAAAGAAATCACCAAGACTCCATATTTCATACAGACTAAGACGAgccagagctgtgtgtgtgtcgcAGCCTGCTATTGGAAAGGAGGGAGAATCCCTAATCTGATTGGTCGAGGgtaaaatgggcgtggctaaTTAGCGCTACggcagtgtttatttattttacgcTAGAATAACATAGCTAACCTTTTTATGAGCTGCTACTGCCAGTGGTGCAACCTAGCGACGTTTCCATGATCTTTTCTTAGCTTCATGTGTTAGTTGTACGTAATCCATTTAGAGAACTTTTATTGTTTAACTAttctaagttaaaaaaaaaataatcgaaagataaaaagaaacaaaaaaaaaggagaaatgtTTGATCATACCTAATGATTTAGTCATGGACATGCCACGTTGTCCTGTTCTCTTGTTTTCtacatgtgtttttgttttctttatgtaTAAAAAAAGGGTGGGACTGAATTACGGTTGTTCAAATCGCTCTTAGTTGATCACACTAttcttttattgttgtttttttattgtattcattttacagcaaaaattttaacactttacatgctctctctctctctctctcggttcCAAATAAAAGCTGTTGAAATTGGATTGTGAACGATTTGGAGGGCGGGGCTTATCCCCTTCGTTCACTCAGACTGGAAGCTCATTGGCTGAGGCAttagcatctaaaaaaaaaattcccaatcCACAACCACTA
>TCONS_00055244
GATGATTTCTGATGCTGTTCGTGTCAGCCTGCTGTGCAAAGGGTTTCGGGTTTTAAACGAGTTAACCCTGAACTGGACTCCACGGCTGAGGAATGCACTCTAGACCCCTGAATCAGCCCCTCACAAAGAACCTTCATTGTGTTCAAAAACTGCTGCATCACAAAAGACTCCCACAAAGGGATTCAGTTTGCAGACCAGAAGCAAGAGTTCAACAAACGTCCCACCAAGATCGGCCGCAGGTCTTTGTCCCGCTCCATCTCACAATCTTCAACGGACAGTTACAGCTCAGCCGCTTCATACACTGACAGCTCCGATGACGAAACTTCTCCTCGCGACAAGCAGCAGAAAAACTCCAAAGGTAGCGGCGATTTCTGCATCAAGAACATCAAACAGGCCGACTTCGGGCGCAGGGAGATCGAGATTGCAGAACAAGAGATGCCTGCGCTCATGGCTTTGAGGAAGAGAGCTCAGGGAGAGAAGCCATTAGCTGGAGCCAAAATTGTTGGTTGCACCCACATCACTGCACAGACTGCTgtgtTAATGGAGACTCTCTCTGCTCTGGGGGCTCAGTGCCGATGGGCCGCCTGTAATATTTACTCCACCCAAAATGAGGTAGCAGCCGCTCTGGCAGAGGGAGGTTTCTCAGTGTTTGCTTGGAAGGG

Function

symbol description
ahcyl2b Predicted to enable adenosylhomocysteinase activity. Predicted to be involved in S-adenosylmethionine cycle. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be active in cytosol. Is expressed in several structures, including notochord; otic placode; otic vesicle; pronephric duct; and segmental plate. Orthologous to human AHCYL2 (adenosylhomocysteinase like 2).

GO:

id name namespace
GO:0033353 S-adenosylmethionine cycle biological_process
GO:0005829 cytosol cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004013 adenosylhomocysteinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040115-5 Predicted to enable adenosylhomocysteinase activity. Predicted to be involved in S-adenosylmethionine cycle. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be active in cytosol. Is expressed in several structures, including notochord; otic placode; otic vesicle; pronephric duct; and segmental plate. Orthologous to human AHCYL2 (adenosylhomocysteinase like 2).

Ensembl:

ensembl_id ENSDARG00000039343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055243 False 2671 mRNA 0.49 17 5025625 5092335
TCONS_00055244 True 662 mRNA 0.51 6 5042567 5077158

Neighbor

gene id symbol gene type direction distance location
XLOC_028463 strip2 coding downstream 6512 4971042 ~ 5019113 (-)
XLOC_028462 NA coding downstream 57914 4962957 ~ 4967711 (-)
XLOC_028461 NA coding downstream 62733 4940467 ~ 4962892 (-)
XLOC_028460 ndufa5 coding downstream 93006 4930406 ~ 4932619 (-)
XLOC_028459 coa6 coding downstream 191008 4832144 ~ 4834617 (-)
XLOC_028465 tmem209 coding upstream 1672 5094007 ~ 5108941 (-)
XLOC_028466 ada2b coding upstream 133217 5225552 ~ 5247335 (-)
XLOC_028467 snap91b coding upstream 168606 5260941 ~ 5302866 (-)
XLOC_028468 si:ch211-214j24.15 coding upstream 211873 5304208 ~ 5317006 (-)
XLOC_028469 osgep coding upstream 235297 5327632 ~ 5333971 (-)
XLOC_028450 FP102892.1 non-coding downstream 509117 4514438 ~ 4516508 (-)
XLOC_028446 CU468826.1 non-coding downstream 650921 4321168 ~ 4374704 (-)
XLOC_028444 NA non-coding downstream 815161 4207590 ~ 4210464 (-)
XLOC_028471 NA non-coding upstream 329411 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 335983 5428318 ~ 5441954 (-)
XLOC_028474 NA non-coding upstream 452667 5545002 ~ 5553182 (-)
XLOC_028478 NA non-coding upstream 600835 5693170 ~ 5745885 (-)
XLOC_028479 NA non-coding upstream 643035 5735370 ~ 5737345 (-)

Expression


Co-expression Network