XLOC_028465 (tmem209)


Basic Information

Item Value
gene id XLOC_028465
gene name tmem209
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5094007 ~ 5108941 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055245
GCTGTTCGTTTGCGTCTCCGGCTTCCTTCTTCACACTTTACCGCGTTCATGGAGGACTGGTGCAGAGGAATGTGATAGTCAGAAGATCAACTGCAGAAATGACCCCCTCAAAAGAAGGCATGACCTCCCTCATTGAGAGGACCATAAAGCTGAGGAAGGAGGAACAGGCACGGCAGGTCGTTCTGGCTTGGGCTGTGCTCAATATGTCTCTGGCTGGGATGATCTACACTGAGATGTCTGGAAAGCTTCTAAGCAGATACTACAACATAACTTACTGGCCCATCTGGTATATCGAACTTGCCCTGGCTTCCCTGTTCAGTCTCAATGCACTTTTTGACTTCTGGAAGTATTTCAAGTACACGATGGCCCCGTCCACAATTGTTGTCAGCCCAGACCAGCATCGCCTTCTTGGACTCAGGGGCTCGGGTATTCAAGCCTCTCCACCTCAGAAACAGGAGAAGAAGGAAGCTCCAGTGTCAGTGCAGTCCTCGCCTCTGCAGGGTCAGAATGTCCTCAGTTTCAGCCCAGCTCGACCTTCGAGCACCAGCCCCAAGTTTTCACCCAGCTGTGTGTCTGGATTCAGTCCACCTCTGAGCAGCACGTCCTCAGGCGGACCCTTCTCCCCCTCCATGTCATTTGGAAAGGTGTTGAACTACAGTCCATCTCAAAGTTCTCCTCCATATCCCAGCAGCCTCGGTCCAGCAGAAAACACCAGCCTCCGCTCTCGTTATCGCACGTCCCCTTCTGTTTTTAATTCACCTGGAGGTAAGGAGGACTGCATCGATGACCTGAAAACTTTGGAGAAGTTTTTGCGTTCGGAAGAGGAGAAAAGCCACCGCAGTCAATTAgGAAGTCCTGAGTCTACATCTCCAAGACACAGTCCGTCATTCTGGAACTACAACCGTACAGTTGGTGATTATGCACAGAGCCTGAGGAAGTTCCAGTATCAGCCGGCCTGTCGATCACAAGCACCTTCAGCTCATAAAGACGACACAGAGCTGGGCTCTAAACAGGCTGCTGAAGAGGTCTGGGCTAGAATCACAACGAGTCGTTTGGTGACGGATAGCATTGACAGCTGGACTGCTAAATTGAGAAACTGGATAAATGACACCATTCTCGTTCATCTGGTCAAAGAGATGGACTCAATCAACAGTCAGCTCAGGAGGATGGGCTGCCCTGAGCTCCAAATTGGAGAGGCCAGTATCAGCAGTCTCAAACAAGCTGCCGTAGTCAAAGCTTCCGCAATCCCCACCCTCAATGCCATCGTGCAGTATTTGGACGTCACACCAAACCAAGAGTACCTGGTGGAGAGAATCAAGGAACTCGCCCACAGCGGCTGCATGAGCTCTTTCCGCTGGAATGGAGGAGGAGATCTGAAAAACCGGAAGTGGGACACAGACCTTCCTACAGACTCTGCTATCCTGATGCACGTGCTGTGTACATACCTGGACTCACGGCTGCCCCCACATCCGAAGTATCCCGACGGAAAAACCTTTACATCTCAGCATTTTATGCAGACGCCGAATAAACCAGACGTATCCAATGAGAACCTGTTCTGCATCCATCAAAGTAGCACAAATCCTCCTCATTATCAGCTCGTCTACCAGGGACACGTTTACAGCTTGCCCAAAggCAGAAATAACTTGTTTCATACAATCCTCATGTTCCTCTACATTATTAAAACCAAGGAGTCCGGCATGTTGGGGAGAGTAAATCTAGGCCTTTCGGGTGTGAATGTACTGTGGATCTTCGGTGACTGAGATGCGACACATCAGTATTTgccacaaagaaaacaaaatcactgCACAAACACTGGGATGtgataaagacttttttttacctTTACACTGTTGTGATGTTGCATGTCTTTTGAGATGCATCGTACCGTCATATCACTTACAACTTCGAATGCAAATACAGGTGGAGTACAGGAAGTCATTTTAGCCGAAGGAAATGTTTTAATCTTCAATGCTGAGATGTTTATGACTTGAAAAAAGTGCCCAGTGGACCTTTTGTTCCACAGGATTTTTGTATCTTGCTCTTCATATTAGGTAAGCAATGTAGTTATACATGAATGTAAGCTCTTTGTGGACACTGCTAGATTCATGATGGCCAGGTTGCATTTTAAAGCAGTTACTGATAGATTTTCttcaactttttaatttttttcctgaAAGAATG
>TCONS_00055246
ATCTGTGCATCATTCACGAGTTGTTTACAtcaaaatttatatattatttcgtATCTTATTTACTGTCGCTCGAGTTCTCCAGCTGTCGCAGTGCAGAGTTTAACTTACCAGTGAAGTATTTCACAAGTGCACATTTGTGATAGTCAGAAGATCAACTGCAGAAATGACCCCCTCAAAAGAAGGCATGACCTCCCTCATTGAGAGGACCATAAAGCTGAGGAAGGAGGAACAGGCACGGCAGGTCGTTCTGGCTTGGGCTGTGCTCAATATGTCTCTGGCTGGGATGATCTACACTGAGATGTCTGGAAAGCTTCTAAGCAGATACTACAACATAACTTACTGGCCCATCTGGTATATCGAACTTGCCCTGGCTTCCCTGTTCAGTCTCAATGCACTTTTTGACTTCTGGAAGTATTTCAAGTACACGATGGCCCCGTCCACAATTGTTGTCAGCCCAGACCAGCATCGCCTTCTTGGACTCAGGGGCTCGGGTATTCAAGCCTCTCCACCTCAGAAACAGGAGAAGAAGGAAGCTCCAGTGTCAGTGCAGTCCTCGCCTCTGCAGGGTCAGAATGTCCTCAGTTTCAGCCCAGCTCGACCTTCGAGCACCAGCCCCAAGTTTTCACCCAGCTGTGTGTCTGGATTCAGTCCACCTCTGAGCAGCACGTCCTCAGGCGGACCCTTCTCCCCCTCCATGTCATTTGGAAAGGTGTTGAACTACAGTCCATCTCAAAGTTCTCCTCCATATCCCAGCAGCCTCGGTCCAGCAGAAAACACCAGCCTCCGCTCTCGTTATCGCACGTCCCCTTCTGTTTTTAATTCACCTGGAGGTAAGGAGGACTGCATCGATGACCTGAAAACTTTGGAGAAGTTTTTGCGTTCGGAAGAGGAGAAAAGCCACCGCAGTCAATTAggt
>TCONS_00055247
ACTTTACCGCGTTCATGGAGGACTGGTGCAGAGGAATGTGATAGTCAGAAGATCAACTGCAGAAATGACCCCCTCAAAAGAAGGCATGACCTCCCTCATTGAGAGGACCATAAAGCTGAGGAAGGAGGAACAGGCACGGCAGGTCGTTCTGGCTTGGGCTGTGCTCAATATGTCTCTGGCTGGGATGATCTACACTGAGATGTCTGGAAAGCTTCTAAGCAGATACTACAACATAACTTACTGGCCCATCTGGTATATCGAACTTGCCCTGGCTTCCCTGTTCAGTCTCAATGCACTTTTTGACTTCTGGAAGTATTTCAAGTACACGATGGCCCCGTCCACAATTGTTGTCAGCCCAGACCAGCATCGCCTTCTTGGACTCAGGGGCTCGGGTGAGTCAGCTGAAAGAGTTTTGGCTAAGAAATCACACATCTGATTTACAATGACAACAACATTTAACAAAGTCTTGTTAAAGCCACAGTTCCACTAAAAAGATGAGCAAAAATGTATTCACAATTTACTTTGCACTCAAGGGATTCCAAgccattaaaataaaagatca

Function

symbol description
tmem209 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM209 (transmembrane protein 209).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2879 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM209 (transmembrane protein 209).

Ensembl:

ensembl_id ENSDARG00000039340

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055245 False 2181 mRNA 0.48 15 5094007 5108941
TCONS_00055246 False 916 mRNA 0.49 6 5102211 5108844
TCONS_00055247 True 562 lncRNA 0.45 4 5105620 5108907

Neighbor

gene id symbol gene type direction distance location
XLOC_028464 ahcyl2b coding downstream 1672 5025625 ~ 5092335 (-)
XLOC_028463 strip2 coding downstream 74894 4971042 ~ 5019113 (-)
XLOC_028462 NA coding downstream 126296 4962957 ~ 4967711 (-)
XLOC_028461 NA coding downstream 131115 4940467 ~ 4962892 (-)
XLOC_028460 ndufa5 coding downstream 161388 4930406 ~ 4932619 (-)
XLOC_028466 ada2b coding upstream 116611 5225552 ~ 5247335 (-)
XLOC_028467 snap91b coding upstream 152000 5260941 ~ 5302866 (-)
XLOC_028468 si:ch211-214j24.15 coding upstream 195267 5304208 ~ 5317006 (-)
XLOC_028469 osgep coding upstream 218691 5327632 ~ 5333971 (-)
XLOC_028470 si:dkey-14d8.1 coding upstream 253968 5362909 ~ 5371639 (-)
XLOC_028450 FP102892.1 non-coding downstream 577499 4514438 ~ 4516508 (-)
XLOC_028446 CU468826.1 non-coding downstream 719303 4321168 ~ 4374704 (-)
XLOC_028444 NA non-coding downstream 883543 4207590 ~ 4210464 (-)
XLOC_028471 NA non-coding upstream 312805 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 319377 5428318 ~ 5441954 (-)
XLOC_028474 NA non-coding upstream 436061 5545002 ~ 5553182 (-)
XLOC_028478 NA non-coding upstream 584229 5693170 ~ 5745885 (-)
XLOC_028479 NA non-coding upstream 626429 5735370 ~ 5737345 (-)

Expression


Co-expression Network