XLOC_028467 (snap91b)


Basic Information

Item Value
gene id XLOC_028467
gene name snap91b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5260941 ~ 5302866 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055251
ACCAGGTCCACCGACAAGGCAGGACCGTAACCTGCATTACCAGCAAAATAAGCGAATAAACATCCAAGATATACACTATATAGGAGGTTTAAAACGTGAAAATATACTGTCGTGTTATAGTCTCGCCGTTAAAAAAAGGCCTGCAAGAGACGCGTCATCATCCACATCATCATCCGACCGGACGGGAAGGACACACGGGCTGCGACCGAATATTACCGGAATCCCGATCAGGTTTAAATCAACGGATCATTATTTGTTCgtttgattaaattgattaaaacataataacaattaaaataaacgcAAAACATCGCGTCGTTTCGATTAGATGTGTGTTTTGTACATATCATAATCGACGCTGACAGTTTTACGTcttcatttgattatttatttcccacgagagtaaaaaaaaaatagctcggCGTAGGGCGTTACGTAATAGTGGCATTATCCAGGGTGCTGAAACCAACCCATGTACAAAACAAGCCTACACCGAGCGCATTTTACCCTAGTACAAACACTCAACTCGCGCTTTTAAACACGCGTTGGTTGGACGACGAAAGGAGATAGTATTGACATTGTCGGTTTCAAGAGATCCACCTTGGATTCCGTCTGCTTTTCTGTCGGCTAATTTCATATGCATTTGGGCTGTCCTTCCCCCTGAAGTTGAATCTTAAGGTGGTTGTCGACGCTACCGGGAGAAAATGTCGGGACAGACTCTGACGGATCGCATAGCCGCGGCGCAGTACCAGCTCACCGGCTCCGATGTGGCTCGTGCCGTTTGCAAAGCCACCACGCACGAGGTGATGGCGCCCAAGAAGAAGCACCTGGAGTATCTGATCTCGACCACCAACGAGACAAACGTGAACATCCCTCAGATGGCTGACACACTATTTGAGAGATCCACCAATGCCAGCTGGGTGGTGGTGTTTAAAGCTCTAACCACGACCCACCACATCTGCATCTACGGCAATGAGAGATTCATCCAGTATTTGGCATCGAGGACTTCCCTGTTCAATCTCAGCAACTTTATTGATAAAACAGGCACCCATGGTTATGACATGTCTACATTCATCAGACGATATGCACGATATCTGAATGAGAAGGCATATGCTTACCGCGCCATGGCCTTCGACTTTACTCGAGTTAAGAAGGGagctGAAGGTGTGATGAGGACTATGGCTACTGAGAAGCTCTTGAAAGCCATGCCAGCACTGCAGACTCAAGTGGACACACTGCTGGAGTTTGACgTTCATCCTAAAGACTTAAACAACGGCATTATAAACGCAGCGTTCATGCTTCTCTTTAAGGATCTGATCAAGCTCTTCGCCTCCTACAATGACGGCATCATCAATCTATTAGagaaatatttcaaaatgaagaAGTCGGAGTGCAAGGACTCTCTGGAGATTTACAAGAAATTTCTGACCCGAGTGACCAAAATCGCAGAGTTCATGAAAATCGCTGAGCAAGTAGGAGTGGATAAGAACGACATCCCTGACATCTCTTATGCACCCAGCAGTATTCTGGAGTCACTGGAGACACATATGAACAGTCTAGAAGGGAAGAAAGGGGATGGGTCACCCACAAAGGGATCGCCTACCAATAACGTGTCTCCAACCTCCACTCCTGCCAAATCCGGTGCAGCCGTTCCTACTTTGGAGCCTCCGCGTGCTGATGCCGCGCCTGCTGCTGAAACTGCCACCGATTCTCTTCTGGATCTGGACCCGCTGTCTTCCTCTGGACCGTCGGGAGGAGCATCAGCAGCACCCACATCTTGGGGAGATCTGCTGGGGTCAGATATGTTTGCGGCCCCTGAAACAGCTGCTGCTGCAGAGGGCGGGGCCACCGCGTCCACGCCTACTCCTGCTGCCGATGGCACCGCGCCAGCTGAATCTGCGGGTGCCAGTGAGGCCAAACCagctgcagcagcagcagcaggaggaGGAGATCTGATGTCGGCGTTCGATGGATTGGGTGATGTGCTCATGCCAGCTATGGCTCCTCAGGCCGCTGGAGCTTCACCCATGGCCTCTTCACCGGTCAAACCCATGGGAGGAGACCTGGACTCAGCTATGGCTAACATGGCAGGCAATTTGGGAATGGGGAACCAGAAACCGGGTGAAGCAGCAGGAGGGGCGAACTGGCAAGCGCAGCCTGCAGGAGGAGCTGCTCCCATGATGCCTGGCTCTCCGATGATGGCTGCTCAACAACCAGTGAGGCCACAGTTTCCAGCAGGAGCCCCTGGACAACCGATGTCTCCAGGAATGGCCCAGAGTCCCAGGAAGCCCCCGCCTCCTAAAGACCCACTCGCTGACCTCAATATCAAAGACTTCATGTAGATGAGCAGCTGCTATGTCACACTTCTTGTGCAGCCCTGATGGATCAGATGtgcgttctctctctctctctctctctctctctctctctctaaatctTCCATTCATCATATTTAGGGCCACCAGTctgactttctctctctctttcccatctctccctccctccctgtTGTTGTAGCACAAACCGTGACCGTGACTAAGTACGTGTGTACGTGTGTTTGTATTTCAATGTTCTCAGTTACTTCAgatctatatatttaaaaaaaatgataatgacATGAAGAGTAACGGCAGATGCATTATTGATCATGCGTCTGCAGAACTCTTAATTGATAGATGTGCATTCATTTCTCCTCACTCGCTTACCGTGggaaaaatcaaatcaaaaaagtGTGACGTTTTCtgtggaaaatgtttttttttttgctgtggtaAATATCACTGGGCCAGTCTGTGTCATCATCAGTCGAGTATTAACAATCTTTTATCTTCCGTGGGAACAATATCCGCG
>TCONS_00055252
ATGTCGGGACAGACTCTGACGGATCGCATAGCCGCGGCGCAGTACCAGCTCACCGGCTCCGATGTGGCTCGTGCCGTTTGCAAAGCCACCACGCACGAGGTGATGGCGCCCAAGAAGAAGCACCTGGAGTATCTGATCTCGACCACCAACGAGACAAACGTGAACATCCCTCAGATGGCTGACACACTATTTGAGAGATCCACCAATGCCAGCTGGGTGGTGGTGTTTAAAGCTCTAACCACGACCCACCACATCTGCATCTACGGCAATGAGAGATTCATCCAGTATTTGGCATCGAGGACTTCCCTGTTCAATCTCAGCAACTTTATTGATAAAACAGGCACCCATGGTTATGACATGTCTACATTCATCAGACGATATGCACGATATCTGAATGAGAAGGCATATGCTTACCGCGCCATGGCCTTCGACTTTACTCGAGTTAAGAAGGGagctGAAGGTGTGATGAGGACTATGGCTACTGAGAAGCTCTTGAAAGCCATGCCAGCACTGCAGACTCAAGTGGACACACTGCTGGAGTTTGACgTTCATCCTAAAGACTTAAACAACGGCATTATAAACGCAGCGTTCATGCTTCTCTTTAAGGATCTGATCAAGCTCTTCGCCTCCTACAATGACGGCATCATCAATCTATTAGagaaatatttcaaaatgaagaAGTCGGAGTGCAAGGACTCTCTGGAGATTTACAAGAAATTTCTGACCCGAGTGACCAAAATCGCAGAGTTCATGAAAATCGCTGAGCAAGTAGGAGTGGATAAGAACGACATCCCTGACATCTCTTATGCACCCAGCAGTATTCTGGAGTCACTGGAGACACATATGAACAGTCTAGAAGGGAAGAAAGGGGATGGGTCACCCACAAAGGGATCGCCTACCAATAACGTGTCTCCAACCTCCACTCCTGCCAAATCCGGTGCAGCCGTTCCTACTTTGGAGCCTCCGCGTGCTGATGCCGCGCCTGCTGCTGAAACTGCCACCGATTCTCTTCTGGATCTGGACCCGCTGTCTTCCTCTGGACCGTCGGGAGGAGCATCAGCAGCACCCACATCTTGGGGAGATCTGCTGGGGTCAGATATGTTTGCGGCCCCTGAAACAGCTGCTGCTGCAGAGGGCGGGGCCACCGCGTCCACGCCTACTCCTGCTGCCGATGGCACCGCGCCAGCTGAATCTGCGGGTGCCAGTGAGGCCAAACCagctgcagcagcagcagcaggaggaGGAGATCTGATGTCGGCGTTCGATGGATTGGGTGATGTGCTCATGCCAGCTATGGCTCCTCAGGCCGCTGGAGCTTCACCCATGGCCTCTTCACCGGTCAAACCCATGGGAGGAGACCTGGACTCAGCTATGGCTAACATGGCAGGCAATTTGGGAATGGGGAACCAGAAACCGGGTGAAGCAGCAGGAGGGGCGAACTGGCAAGCGCAGCCTGCAGGAGGAGCTGCTCCCATGATGCCTGGCTCTCCGATGATGGCTGCTCAACAACCAGTGAGGCCACAGTTTCCAGCAGGAGCCCCTGGACAACCGATGTCTCCAGGAATGGCCCAGAGTCCCAGGAAGCCCCCGCCTCCTAAAGACCCACTCGCTGACCTCAATATCAAAGACTTCATGTAG
>TCONS_00055253
ATCTATTAGagaaatatttcaaaatgaagaAGTCGGAGTGCAAGGACTCTCTGGAGATTTACAAGAAATTTCTGACCCGAGTGACCAAAATCGCAGAGTTCATGAAAATCGCTGAGCAAGTAGGAGTGGATAAGAACGACATCCCTGACATCTCTTATGCACCCAGCAGTATTCTGGAGTCACTGGAGACACATATGAACAGTCTAGAAGGGAAGAAAGGGGATGGGTCACCCACAAAGGGATCGCCTACCAATAACGTGTCTCCAACCTCCACTCCTGCCAAATCCGGTGCAGCCGTTCCTACTTTGGAGCCTCCGCGTGCTGATGCCGCGCCTGCTGCTGAAACTGCCACCGATTCTCTTCTGGATCTGGACCCGCTGTCTTCCTCTGGACCGTCGGGAGGAGCATCAGCAGCACCCACATCTTGGGGAGATCTGCTGGGGTCAGAAATAGGTTCCCTTACTACAGAGACTCTCCTTCCTGACCCAACCCCCGCCGTAGACTCCGCCTCCTCAGCCACGCCCACCACCACAGTCGCAGAGGCAGCCGTTTCTTTGGCTCCTCCTCCCTCCGCTGCCGGTGCTTCCTCCGGCTCAGCGGATCTCCTCGGAGATATGTTTGCGGCCCCTGAAACAGCTGCTGCTGCAGAGGGCGGGGCCACCGCGTCCACGCCTACTCCTGCTGCCGATGGCACCGCGCCAGCTGAATCTGCGGGTGCCAGTGAGGCCAAACCagctgcagcagcagcagcaggaggaGGAGATCTGATGTCGGCTATGGCTCCTCAGGCCGCTGGAGCTTCACCCATGGCCTCTTCACCGGTCAAACCCATGGGAGGAGACCTGGACTCAGCTATGGCTAACATGGCAGGCAGT
>TCONS_00055254
attctgacttcaactgtatgctcaAACTGTCGCTCTGTGTTGTTTCAGGGATCGCCTACCAATAACGTGTCTCCAACCTCCACTCCTGCCAAATCCGGTGCAGCCGTTCCTACTTTGGAGCCTCCGCGTGCTGATGCCGCGCCTGCTGCTGAAACTGCCACCGATTCTCTTCTGGATCTGGACCCGCTGTCTTCCTCTGGACCGTCGGGAGGAGCATCAGCAGCACCCACATCTTGGGGAGATCTGCTGGGGTCAGGTAAGCACTGCTGGCTTTTCATTTGGTGTGTTTTCATGTGATTTGCTGTGTTAAATGTTTCACTCACTTGATTAAACATTGTAGTTCATCTGGAAAATTGAAATTACAGCCTGACAGTCCTATGTATGGCAATCCTAGCCACCCGTTTAGCCTCTCCTCTTAGTGTTTGCTCAgtagaatctctctctctctctctccctta

Function

symbol description
snap91b Predicted to enable SNARE binding activity; clathrin heavy chain binding activity; and phosphatidylinositol binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle budding from presynaptic endocytic zone membrane. Predicted to act upstream of or within clathrin coat assembly. Predicted to be active in clathrin-coated pit; clathrin-coated vesicle; and synaptic vesicle. Predicted to be extrinsic component of presynaptic endocytic zone membrane. Orthologous to human SNAP91 (synaptosome associated protein 91).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006900 vesicle budding from membrane biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0098894 extrinsic component of presynaptic endocytic zone membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0032050 clathrin heavy chain binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0005545 1-phosphatidylinositol binding molecular_function
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-81 Predicted to enable SNARE binding activity; clathrin heavy chain binding activity; and phosphatidylinositol binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle budding from presynaptic endocytic zone membrane. Predicted to act upstream of or within clathrin coat assembly. Predicted to be active in clathrin-coated pit; clathrin-coated vesicle; and synaptic vesicle. Predicted to be extrinsic component of presynaptic endocytic zone membrane. Orthologous to human SNAP91 (synaptosome associated protein 91).

Ensembl:

ensembl_id ENSDARG00000015931

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055251 False 2850 mRNA 0.49 22 5260941 5302866
TCONS_00055252 False 1638 mRNA 0.54 21 5263162 5302162
TCONS_00055253 False 875 mRNA 0.57 13 5269581 5291256
TCONS_00055254 True 458 lncRNA 0.50 3 5282002 5282832

Neighbor

gene id symbol gene type direction distance location
XLOC_028466 ada2b coding downstream 13606 5225552 ~ 5247335 (-)
XLOC_028465 tmem209 coding downstream 152000 5094007 ~ 5108941 (-)
XLOC_028464 ahcyl2b coding downstream 168606 5025625 ~ 5092335 (-)
XLOC_028463 strip2 coding downstream 241828 4971042 ~ 5019113 (-)
XLOC_028462 NA coding downstream 293230 4962957 ~ 4967711 (-)
XLOC_028468 si:ch211-214j24.15 coding upstream 1342 5304208 ~ 5317006 (-)
XLOC_028469 osgep coding upstream 24766 5327632 ~ 5333971 (-)
XLOC_028470 si:dkey-14d8.1 coding upstream 60043 5362909 ~ 5371639 (-)
XLOC_028471 NA coding upstream 118880 5421746 ~ 5459469 (-)
XLOC_028472 NA coding upstream 125452 5428318 ~ 5441954 (-)
XLOC_028461 NA non-coding downstream 298049 4940467 ~ 4962892 (-)
XLOC_028450 FP102892.1 non-coding downstream 744433 4514438 ~ 4516508 (-)
XLOC_028446 CU468826.1 non-coding downstream 886237 4321168 ~ 4374704 (-)
XLOC_028444 NA non-coding downstream 1050477 4207590 ~ 4210464 (-)
XLOC_028474 NA non-coding upstream 242136 5545002 ~ 5553182 (-)
XLOC_028478 NA non-coding upstream 390304 5693170 ~ 5745885 (-)
XLOC_028479 NA non-coding upstream 432504 5735370 ~ 5737345 (-)

Expression


Co-expression Network