smyd1b (smyd1b)


Basic Information

Item Value
gene id smyd1b
gene name smyd1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 70100122 ~ 70113042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622073.2
TAGTAGATTGGGGTGTGGAATGTGCAGTTGTTGAAGAACGTGAAAGATCTACTTTGTAGAGGACACCCAGACAGTACTCacttccagtctctctctctctgtctccttaacCTAACggactgtttctctgtctctcggaCCGGACCACCACACCTGACATGGACAACATTGAGGTGTTTGACTCACCTGGAAAGGGGAGGGGCCTTAGAGCCACTAAGGAGCTGCTTTCCGGAGACGTTCTTTTCTCAGAACCCCCCTTTGCTGCAGTTGTCTTTGACAGTCTTGCAGACAAGATCTGCCACAGCTGTTTCCGCAGACAGGACAAGCTGCAGCGCTGTGGCCAGTGTAAGTTCGCCCAGTACTGTGACAAGACATGCCAGAGCGCTGGCTGGAAGGAACATAAGCTGGAGTGTGGAGCCATCAAGGCTTTTGGGGCCATCGGGGACAACTTCGGCAAGGCACCCAATGAGAACATCCGTTTGGCCGCCCGCATCATGTGGCGCCTCGATAAAGAGGGCGGTGTCATGTCAGACATGCAGATGACCTCATTGGACGATCTGGAGAACCACATCAGTGACATGCCAGAGGATGATCTGAAGGAGCTGAAGGTGGACATCCACAACTTCTTGGACTACTGGCCACGCAACAGCAAGCAACACCGTGTAGACGACATCTCGCACATCTTTGGAGTGATCAACTGTAATGGCTTCACAGTGAGTGACCAGAGAGGTCTAAATGCTGTGGGAGTGGGTCTGTTCCCTAACCTGTGTCTGGTCAACCATGACTGCTGGCCTAACTGCACTGTCATCCTCAACCATGGCAATCAGTCGGCTGTGAATACTGTGTATCACTCTCAGATGAGgATTGAGTTGCGTGCCCTGGGCAAGATCGAGCCGGGTGAGGAGGTGACAGTGTCCTACGTGGATTTCCTGAACGTGactgaggacagacagagacagctgaAAATGCATTACTTCTTTGACTGCACCTGTGAACACTGTAAAGGTCACATCAAAGACGACCTCAAGATGGGAGGCAAGGAGGTGGACGGGGTCAAGGTACCTGAGGAGCaggtgaaggaggtaacagagTACAGTCTGCAGATGCTGCAGAAGATGGATAAGGCTCGCATGGAGGGGAACTACCATGAGgttATTAAGATATGCAGGGAGTGTATGGAGAAACAGGAGCCAGTGTTGGCTGATACACACATCTACCAGCTAAGGATGTGGAGCACAGCCAGCGAGGTGTTAGCCTACCTGCAGTTTATTGACGAGGCCGCTGACTATGCACGCAAAATGGTGGACGGATACAACAAGCTATACCATCCATGCAACGCCCACCTGGGGATGGCAACCATGAGGGCAGGAGTGACCCACTGGCAGGCAGGGAAGATAGAGGTGGGACACGGCATGATCTGTAAAGCCTATGCCATCCTGCAGAGAACACACGGACCCACACATCCCATCACCAAAGACCTTGAGgCTATGCGTATGCAGACAGAAATGGAGCTGAGGATGTTTAGAGAGAATGagtatatttacaaaagtatgcGGGAGGCTGCCCTGAAGAACCAGCCAATGAACATGATGAACGAACCTATGGCGGAGAGCGTCAAGAATCTCTTCCGCCGGCAGAAGAAGTGAtctcacatacacaccacaccacacacacagacacacacaatagcaTAGCAGTGTACACAGTACACACCTTGAGATCAGTTTACATACAGATTGTCAGAGGAATCAACCCCTCTCAGTTCCAACATCCTTGGCTCCTCACCAACCATACTGTAGCTGGGAGACCCCTCACcctcatatcctctctctctatcaccttgTCAGCTACACTGGTGTGAAAGAACTAGTAAAAGCAAATTCCCAAAAACACATCCACCATTGCTTTAACCCAACTTGCATTTTCAAAATCACTAGAAATTGAGGAAGCCACTTTTAAACTATTATGGGCCCTTTAATGGAAGGATTCGGGCCCATCTGGTAACCCTTATATTGTAACAGACTAGATGGACGGCCCTACCAAAGCTTTAAAGCTAGAATTCTTAGTTGCTGTATCTATTTTAggacttataaattaattatataatacctattgattcttgaagaatataacttataaatatataagcttgttttactccaatgtttgtaaacaatggaaatgtaaacaaacactgtatagctttAAAACATGGGTAAAACTATAATTATTATATCGTGAATGGTCTGTCCTTCCATCCATAGCTCTGTATATCAaattgagagtggttacatttctccaggcccatctaTCGGCCTCATACCAAAACAGAGGAGGGGTGACCGCTTTGTTATTGGTTCAATGAAGAATTCTAGCTTTATTTTCTACACTGCTGGGCTTTTTAactttatataaaaaaaa
>XM_021622074.2
AGTAGATTGGGGTGTGGAATGTGCAGTTGTTGAAGAACGTGAAAGATCTACTTTGTAGAGGACACCCAGACAGTACTCacttccagtctctctctctctgtctccttaacCTAACggactgtttctctgtctctcggaCCGGACCACCACACCTGACATGGACAACATTGAGGTGTTTGACTCACCTGGAAAGGGGAGGGGCCTTAGAGCCACTAAGGAGCTGCTTTCCGGAGACGTTCTTTTCTCAGAACCCCCCTTTGCTGCAGTTGTCTTTGACAGTCTTGCAGACAAGATCTGCCACAGCTGTTTCCGCAGACAGGACAAGCTGCAGCGCTGTGGCCAGTGTAAGTTCGCCCAGTACTGTGACAAGACATGCCAGAGCGCTGGCTGGAAGGAACATAAGCTGGAGTGTGGAGCCATCAAGGCTTTTGGGGCCATCGGGGACAACTTCGGCAAGGCACCCAATGAGAACATCCGTTTGGCCGCCCGCATCATGTGGCGCCTCGATAAAGAGGGCGGTGTCATGTCAGACATGCAGATGACCTCATTGGACGATCTGGAGAACCACATCAGTGACATGCCAGAGGATGATCTGAAGGAGCTGAAGGTGGACATCCACAACTTCTTGGACTACTGGCCACGCAACAGCAAGCAACACCGTGTAGACGACATCTCGCACATCTTTGGAGTGATCAACTGTAATGGCTTCACAGTGAGTGACCAGAGAGGTCTAAATGCTGTGGGAGTGGGTCTGTTCCCTAACCTGTGTCTGGTCAACCATGACTGCTGGCCTAACTGCACTGTCATCCTCAACCATGGCAAgATTGAGTTGCGTGCCCTGGGCAAGATCGAGCCGGGTGAGGAGGTGACAGTGTCCTACGTGGATTTCCTGAACGTGactgaggacagacagagacagctgaAAATGCATTACTTCTTTGACTGCACCTGTGAACACTGTAAAGGTCACATCAAAGACGACCTCAAGATGGGAGGCAAGGAGGTGGACGGGGTCAAGGTACCTGAGGAGCaggtgaaggaggtaacagagTACAGTCTGCAGATGCTGCAGAAGATGGATAAGGCTCGCATGGAGGGGAACTACCATGAGgttATTAAGATATGCAGGGAGTGTATGGAGAAACAGGAGCCAGTGTTGGCTGATACACACATCTACCAGCTAAGGATGTGGAGCACAGCCAGCGAGGTGTTAGCCTACCTGCAGTTTATTGACGAGGCCGCTGACTATGCACGCAAAATGGTGGACGGATACAACAAGCTATACCATCCATGCAACGCCCACCTGGGGATGGCAACCATGAGGGCAGGAGTGACCCACTGGCAGGCAGGGAAGATAGAGGTGGGACACGGCATGATCTGTAAAGCCTATGCCATCCTGCAGAGAACACACGGACCCACACATCCCATCACCAAAGACCTTGAGgCTATGCGTATGCAGACAGAAATGGAGCTGAGGATGTTTAGAGAGAATGagtatatttacaaaagtatgcGGGAGGCTGCCCTGAAGAACCAGCCAATGAACATGATGAACGAACCTATGGCGGAGAGCGTCAAGAATCTCTTCCGCCGGCAGAAGAAGTGAtctcacatacacac

Function

symbol description
smyd1b Enables histone methyltransferase activity (H3-K4 specific) and myosin binding activity. Acts upstream of or within heart contraction; histone H3-K4 methylation; and muscle cell development. Located in M band. Is expressed in cardiovascular system; musculature system; segmental plate; somite; and tail bud. Orthologous to human SMYD1 (SET and MYND domain containing 1).

NR:

description
histone-lysine N-methyltransferase SMYD1-like isoform X2

GO: NA

KEGG:

id description
K11426 SMYD; [histone H3]-lysine4/36 N-trimethyltransferase SMYD

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622073.2 False 2421 mRNA 0.47 10 70100122 70113042
XM_021622074.2 True 1620 mRNA 0.52 9 70100883 70113041

Neighbor

gene id symbol gene type direction distance location
LOC110536332 LOC106580566 coding downstream 69702 70026208 ~ 70030420 (-)
LOC110536645 NA coding downstream 100176 69996328 ~ 69999946 (-)
LOC110536328 LOC106580568 coding downstream 117064 69974888 ~ 69983058 (-)
LOC110536320 LOC106585172 coding downstream 201956 69895616 ~ 69898166 (-)
LOC110536318 LOC106580577 coding downstream 208040 69847223 ~ 69892082 (-)
LOC110536342 efna5 coding upstream 443967 70557009 ~ 70744135 (-)
LOC110536344 habp4 coding upstream 1295312 71408354 ~ 71411778 (-)
LOC110536346 slc35d2 coding upstream 1318796 71431838 ~ 71442390 (-)
LOC110536347 NA coding upstream 1332705 71445747 ~ 71452891 (-)
ubox5 LOC106580617 coding upstream 1346294 71459336 ~ 71466142 (-)
G1011772 NA non-coding downstream 17680 70075942 ~ 70082442 (-)
G1011765 NA non-coding downstream 45448 70054273 ~ 70054674 (-)
G1011751 NA non-coding downstream 84011 70015981 ~ 70016111 (-)
G1011750 NA non-coding downstream 86328 70001495 ~ 70013794 (-)
G1011740 NA non-coding downstream 127358 69972487 ~ 69972764 (-)
G1011850 LOC106580595 non-coding upstream 18483 70131525 ~ 70134544 (-)
G1011860 NA non-coding upstream 34676 70147718 ~ 70147948 (-)
G1011861 NA non-coding upstream 35876 70148918 ~ 70149145 (-)
G1011864 NA non-coding upstream 39212 70152254 ~ 70152473 (-)
G1011869 NA non-coding upstream 53937 70166979 ~ 70169305 (-)
G1011014 NA other downstream 793694 69305336 ~ 69306428 (-)
G1010922 NA other downstream 980636 69116507 ~ 69119486 (-)
G1010443 NA other downstream 1412160 68687257 ~ 68687962 (-)
G1009720 NA other downstream 2128794 67971071 ~ 67971328 (-)
G1007506 NA other downstream 3727173 66372642 ~ 66372949 (-)
G1012814 NA other upstream 771434 70884476 ~ 70890991 (-)
G1013669 NA other upstream 1384266 71497308 ~ 71515434 (-)
G1013960 NA other upstream 1883039 71996081 ~ 71996688 (-)
G1014411 NA other upstream 2246243 72359285 ~ 72359505 (-)
G1014639 NA other upstream 2333612 72446654 ~ 72449340 (-)

Expression


Co-expression Network