LOC110536342 (efna5)


Basic Information

Item Value
gene id LOC110536342
gene name efna5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 70557009 ~ 70744135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622083.2
TGGCAGTCAGCAACGAACTGCCTTTGCTCtcaccttccctctcttctcgtcCGGTTGAATCTAAACATCAGGTGAAAGAAGCACATGAATCAAGCGtgttttattttttctctccaatGGTTATATATGAAGAGAATGCTGTGGAATGCTGCCATTTGGGTTCCGGGCAAACAAGCTGCCCTACTGTCACCCAGCAGCAGCGCATGAGAGAGGCTCGAGGACGGACTCCTCCCCACCTACCCGTGACACTTTCAAGACAGCGCTGAGAAAGGAGAGCAGCCTTTTACGGCCAGTCTGCGAACAGAGCAGTGAGACAGCGTTACGTATAAACGACTCCACTGCAGCCGGGGGTTGCCTATGTGGCTTTCTAAAGTTCCACCTCTGAAAACGTTGACCTCTGACGGACTCGAGCTAAAGCGCGAGCTTGCTTCTTTTCGTTTCTCATTATTGGACTTGGACCTACCCTCTGCGCTGTTGATTCCCAGCGAACAGTCCAGACACGGATCCAGCTCAGCGCATACCATGACCTTACAGAGACTGCTGTATTAGATGGTCATTCTAATCAATGTTTTATACATCTGACTGCATGTATTGATACCCTTTTTGTACATTTGTGTGAAAAAAGTGTCTGCCCTAGGAGTGATTTTTACTCATCCTGGAGCCGTCAAAGCTGACGTCCCATGAACACATAAAACTGAACCCGGACACTGAACCTGAGCGAGATGCACTACACACAGTGACACTTGCATTTGATAACTTCACCTGCTACCGTCGTCAATGAATTTTAACAAAGTGACCAGCAAGGCGTCATCTATATCGCAGGTTGCGCTATCAAAGCCCTTAGCACGTAGTGGTGTAGGAGACAGCGATTTTCTGTTGTATTGAATTGTCCTGCCTTTTTCTGTCATCCATAAACTGCGACAGAGGAAAGAAAAGGCACACAAATGTAAACGAAAGAAGGCATCTCTCCAGCTGAAGTGTACCTAGAACTGACAGATCGTGCAGTCACCCCACATCGAAGAGGAATACGTGCCGAACTTTGCTGTTGTGATGTTGAAAGTGGAGATGGTGCTATTTGTCTTTCTGGTGCTATGGATGTGTGTATTCAGCCAGGAGCCCAGCTCCAAGGTGGTGGCCGACCGGTATGCCGTCTTCTGGAACCGAACCAACCCCAGGTTCCATCGTGGAGACTATCACATTGACGTGTGTATAAACGACTACCTGGATGTGTTCTGTCCCCACTATGAAGACATGGTGCCGGAGGAGCTGATGGAGCGCTATGTCCTCTACATGGTCAACTACGACGGCTACAGTACGTGTGACCACACAGCCAAGGGCTTTAAACGCTGGGAGTGTAACAGGCCTCACTCCCCCAATGGACCACTCAAGTTCTCTGAGAAGTTCCAGCTCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCAGACCGGGCAGAGAGTACTACTACATCTCCTCCACCATCGCCGAGAACGGACGAAGAACATGCCTGAAACTCAAAGTCTTTGTCCGACCATCAAACAGCTGTGTGAAAACTATAGGTGTACATGACCGTGTTTTTGACGTAAACGACAAAGTAGACAATTCATTAGAACCCCGAGaTGATACAAGTCATGAGTCTGCCGAACCGTCCAGGAGTGACGCCACAAGCGCAGCCTCACACTTGCGGATAGCCAGTCCACTGCTGGCTGCACTACTAATCTGCTTAGCAACACTCTTCACCTTATAGCGCCTCCCCCTGTCCTGGAGGGGAATTACACCCTGCGCGGCCTGAATCTACCCAATGATGAGGCTGGGGCTAGGGTGGGAGaa
>XM_021622084.2
TGGCAGTCAGCAACGAACTGCCTTTGCTCtcaccttccctctcttctcgtcCGGTTGAATCTAAACATCAGGTGAAAGAAGCACATGAATCAAGCGtgttttattttttctctccaatGGTTATATATGAAGAGAATGCTGTGGAATGCTGCCATTTGGGTTCCGGGCAAACAAGCTGCCCTACTGTCACCCAGCAGCAGCGCATGAGAGAGGCTCGAGGACGGACTCCTCCCCACCTACCCGTGACACTTTCAAGACAGCGCTGAGAAAGGAGAGCAGCCTTTTACGGCCAGTCTGCGAACAGAGCAGTGAGACAGCGTTACGTATAAACGACTCCACTGCAGCCGGGGGTTGCCTATGTGGCTTTCTAAAGTTCCACCTCTGAAAACGTTGACCTCTGACGGACTCGAGCTAAAGCGCGAGCTTGCTTCTTTTCGTTTCTCATTATTGGACTTGGACCTACCCTCTGCGCTGTTGATTCCCAGCGAACAGTCCAGACACGGATCCAGCTCAGCGCATACCATGACCTTACAGAGACTGCTGTATTAGATGGTCATTCTAATCAATGTTTTATACATCTGACTGCATGTATTGATACCCTTTTTGTACATTTGTGTGAAAAAAGTGTCTGCCCTAGGAGTGATTTTTACTCATCCTGGAGCCGTCAAAGCTGACGTCCCATGAACACATAAAACTGAACCCGGACACTGAACCTGAGCGAGATGCACTACACACAGTGACACTTGCATTTGATAACTTCACCTGCTACCGTCGTCAATGAATTTTAACAAAGTGACCAGCAAGGCGTCATCTATATCGCAGGTTGCGCTATCAAAGCCCTTAGCACGTAGTGGTGTAGGAGACAGCGATTTTCTGTTGTATTGAATTGTCCTGCCTTTTTCTGTCATCCATAAACTGCGACAGAGGAAAGAAAAGGCACACAAATGTAAACGAAAGAAGGCATCTCTCCAGCTGAAGTGTACCTAGAACTGACAGATCGTGCAGTCACCCCACATCGAAGAGGAATACGTGCCGAACTTTGCTGTTGTGATGTTGAAAGTGGAGATGGTGCTATTTGTCTTTCTGGTGCTATGGATGTGTGTATTCAGCCAGGAGCCCAGCTCCAAGGTGGTGGCCGACCGGTATGCCGTCTTCTGGAACCGAACCAACCCCAGGTTCCATCGTGGAGACTATCACATTGACGTGTGTATAAACGACTACCTGGATGTGTTCTGTCCCCACTATGAAGACATGGTGCCGGAGGAGCTGATGGAGCGCTATGTCCTCTACATGGTCAACTACGACGGCTACAGTACGTGTGACCACACAGCCAAGGGCTTTAAACGCTGGGAGTGTAACAGGCCTCACTCCCCCAATGGACCACTCAAGTTCTCTGAGAAGTTCCAGCTCTTCACCCCCTTCTCTCTGGGCTTCGAGTTCAGACCGGGCAGAGAGTACTACTACATCTCCTCCACCATCGCCGAGAACGGACGAAGAACATGCCTGAAACTCAAAGTCTTTGTCCGACCATCAAaTGATACAAGTCATGAGTCTGCCGAACCGTCCAGGAGTGACGCCACAAGCGCAGCCTCACACTTGCGGATAGCCAGTCCACTGCTGGCTGCACTACTAATCTGCTTAGCAACACTCTTCACCTTATAGCGCCTCCCCCTGTCCTGGAGGGGAATTACACCCTGCGCGGCCTGAATCTACCCAATGATGAGGCTGGGGCTAGGGTGGGAGaa

Function

symbol description
efna5 Enables ephrin receptor binding activity. Involved in several processes, including ephrin receptor signaling pathway; regulation of cytoskeleton organization; and regulation of focal adhesion assembly. Acts upstream of or within negative regulation of substrate adhesion-dependent cell spreading. Is anchored component of external side of plasma membrane.

NR:

description
ephrin-A5b-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622083.2 False 1826 mRNA 0.50 5 70557009 70744135
XM_021622084.2 True 1745 mRNA 0.50 4 70557009 70744135

Neighbor

gene id symbol gene type direction distance location
smyd1b smyd1b coding downstream 443967 70100122 ~ 70113042 (-)
LOC110536332 LOC106580566 coding downstream 526589 70026208 ~ 70030420 (-)
LOC110536645 NA coding downstream 557063 69996328 ~ 69999946 (-)
LOC110536328 LOC106580568 coding downstream 573951 69974888 ~ 69983058 (-)
LOC110536320 LOC106585172 coding downstream 658843 69895616 ~ 69898166 (-)
LOC110536344 habp4 coding upstream 664219 71408354 ~ 71411778 (-)
LOC110536346 slc35d2 coding upstream 687703 71431838 ~ 71442390 (-)
LOC110536347 NA coding upstream 701612 71445747 ~ 71452891 (-)
ubox5 LOC106580617 coding upstream 715201 71459336 ~ 71466142 (-)
LOC110536349 LOC106580618 coding upstream 729024 71473159 ~ 71488892 (-)
G1012524 NA non-coding downstream 45 70553413 ~ 70556964 (-)
G1012523 NA non-coding downstream 4015 70552107 ~ 70552994 (-)
G1012227 LOC106582599 non-coding downstream 92994 70463784 ~ 70464015 (-)
G1012224 NA non-coding downstream 97757 70458947 ~ 70459252 (-)
G1012162 NA non-coding downstream 138822 70417937 ~ 70418187 (-)
G1012692 NA non-coding upstream 76622 70820757 ~ 70821120 (-)
G1012708 NA non-coding upstream 88891 70833026 ~ 70833249 (-)
G1012720 NA non-coding upstream 95209 70839344 ~ 70839576 (-)
G1012724 NA non-coding upstream 97127 70841262 ~ 70841553 (-)
G1012738 NA non-coding upstream 107013 70851148 ~ 70851370 (-)
G1011014 NA other downstream 1250581 69305336 ~ 69306428 (-)
G1010922 NA other downstream 1437523 69116507 ~ 69119486 (-)
G1010443 NA other downstream 1869047 68687257 ~ 68687962 (-)
G1009720 NA other downstream 2585681 67971071 ~ 67971328 (-)
G1007506 NA other downstream 4184060 66372642 ~ 66372949 (-)
G1012814 NA other upstream 140341 70884476 ~ 70890991 (-)
G1013669 NA other upstream 753173 71497308 ~ 71515434 (-)
G1013960 NA other upstream 1251946 71996081 ~ 71996688 (-)
G1014411 NA other upstream 1615150 72359285 ~ 72359505 (-)
G1014639 NA other upstream 1702519 72446654 ~ 72449340 (-)

Expression


Co-expression Network