LOC110536344 (habp4)


Basic Information

Item Value
gene id LOC110536344
gene name habp4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 71408354 ~ 71411778 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622089.2
TTTAAACTCACGACCAAACTATATGAGCCTACTAGGTGTTTAGCAAGTTCATGTAAAATGCTCGTTATACCATAACAACGTGTGGGTTGACTTCAGCAGTTTAACTATATTCGCTACTTTATGAATACTGTGTAGTAGCTAAATTAGCAAGCTACAATTCCATGGCTTTGAAGTTGATTGGCGTTTCCGAAAATGCAGCAATGCTCCCCGACGACTACGGTTGTATGGTGGCGAATCGTTTCTGTCAGCTTGTGGATGACGATGCCGACCCGTTCGACTTTATAAAACATGCCGAGGTACAGAAGGAGAAGAAAAAGAAAGCAAACCAAATGACAGTGAAGCCTAAAAAACCTGGACAGAGGGAGTCCCAGAAAGATAGGCGGGTCCCCGTTTTAGCCGACAGAGAAGACAACCTGCCAGGAAATAAAACAGGTGGTAAGTGGTCTGCCCGAGGGGGAGGGGTCCAGATTGAGACCAGAGGGTTGGTGGAGGCTGAGAGTGGCGCAAGGCGAGGTGTTCTTGGGGACTGCAGGACCAACCAAGAGGAACACCCACCGGAGTACTCCATCCAGAAGCCAGCTCATTATGCTTGTGGCCAAGTTCAAGGAGGTGGCTACAGAAACATGGATACTACCGGTAGCTTCAACCTGAGGGGCAAGAGAGAATATGAACGCCACAGTGGAACAGTCTTCTCCcttgaggagaagagaggaggacgtGGGCTCTGGAACAGGGGCTGTGTTCAAGACTCTATTTCCATGGGTGATGTAGGGGTGAATGTGAAGCCTGATGCAGGAGGCATCCCACCTGAGGCCGGCCAACAGCCAGCAGAGATGGCGGGAGAGAATCACCTATCAGAGGTGGAGGGGGATGTGGTGGTCCAAGTTGCCATGGAGATGTCTCTGGACGAGTGGAAGGCCCTGCAGGAGCAGTGTCGCCCCAAGGCAGAGTTTAACCTCCGTAAACTGGACTGCAAGGTGCCCTCCAAGGCCAGAGTAATACACAAGTCCAAACGTATTGAGAACTTGAAGGCGGCGTCTgtggaggaacaggaagaggactGTCACTTCTCCAGTCTGCGCAGGTCTGCCAATGACATCACTTCCCATGTGGAGTTCAACTTTGGCAGCCTGCTGCGCCCCAGCCGAGGGGGGAAGGGACaaggcaggggggagagagggggggtgactgAAAAGGCTTACGTCCTAGCCCCAAACCCAGAAGACCCTGATGACTTCCCTGCATTGACTGTGGGGAGATAGGTTACTCACTATATATAATCTAATACAATTTTGGGAATTTACAGTGTGCCTGTAAATTCCCAAAATAATCAAGGATGTATATACTTGAGATTAATTGTATTACAAGGGATTCCCTGTTTACATTTGCCTCCTGTTGAAATGGGTTGCTCTCTAATAAGCACTGTTTGGTTTGTTGCTATGACAACACATTGGTCTTGTGTACATTTGTTATTTCTCCTGGCTTGGGATCTGACTGAAGCAATGTTAATAAGACCTGTGATAAATGCACTGA

Function

symbol description
habp4 Enables SUMO binding activity. Involved in PML body organization; negative regulation of DNA binding activity; and positive regulation of gene expression. Located in several cellular components, including Golgi apparatus; cytoplasmic stress granule; and nuclear lumen.

NR:

description
intracellular hyaluronan-binding protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622089.2 True 1533 mRNA 0.49 8 71408354 71411778

Neighbor

gene id symbol gene type direction distance location
LOC110536342 efna5 coding downstream 664219 70557009 ~ 70744135 (-)
smyd1b smyd1b coding downstream 1295312 70100122 ~ 70113042 (-)
LOC110536332 LOC106580566 coding downstream 1377934 70026208 ~ 70030420 (-)
LOC110536645 NA coding downstream 1408408 69996328 ~ 69999946 (-)
LOC110536328 LOC106580568 coding downstream 1425296 69974888 ~ 69983058 (-)
LOC110536346 slc35d2 coding upstream 20060 71431838 ~ 71442390 (-)
LOC110536347 NA coding upstream 33969 71445747 ~ 71452891 (-)
ubox5 LOC106580617 coding upstream 47558 71459336 ~ 71466142 (-)
LOC110536349 LOC106580618 coding upstream 61381 71473159 ~ 71488892 (-)
LOC100135988 slr coding upstream 113085 71524863 ~ 71599164 (-)
G1013649 NA non-coding downstream 460 71406953 ~ 71407894 (-)
G1013653 NA non-coding downstream 1492 71405643 ~ 71406862 (-)
G1013654 cdc14b non-coding downstream 2751 71404672 ~ 71405603 (-)
G1013651 NA non-coding downstream 11438 71396691 ~ 71396916 (-)
G1013648 NA non-coding downstream 12294 71395834 ~ 71396060 (-)
G1013668 NA non-coding upstream 95580 71507358 ~ 71509002 (-)
G1013729 NA non-coding upstream 199672 71611450 ~ 71611739 (-)
G1013740 NA non-coding upstream 205568 71617346 ~ 71617552 (-)
G1012814 NA other downstream 517363 70884476 ~ 70890991 (-)
G1011014 NA other downstream 2101926 69305336 ~ 69306428 (-)
G1010922 NA other downstream 2288868 69116507 ~ 69119486 (-)
G1010443 NA other downstream 2720392 68687257 ~ 68687962 (-)
G1009720 NA other downstream 3437026 67971071 ~ 67971328 (-)
G1013669 NA other upstream 85530 71497308 ~ 71515434 (-)
G1013960 NA other upstream 584303 71996081 ~ 71996688 (-)
G1014411 NA other upstream 947507 72359285 ~ 72359505 (-)
G1014639 NA other upstream 1034876 72446654 ~ 72449340 (-)
rnft2 rnft2 other upstream 2891872 74303648 ~ 74312488 (-)

Expression


Co-expression Network