LOC110536347


Basic Information

Item Value
gene id LOC110536347
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 71445747 ~ 71452891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034736.1
ATAGCTGTGGGGAAGGGCGGAGCTCCCTAGAGACGGCACGCTGTCTGGAGGATAACTTCCTGCCCACCCCCTGCTAGGTGGGAGACCCTGTGGATCTGAAGTAGAACGCTGTGCCGCAACCGGAGTCTGCTGTGACTCAGGTACGAGAGCTGTGTTCTAGACTCACACTGTTTTGGGGAGAGTCCGTACCACTCTCCTGCGGACCACAGCTCCAGAGCCACAAGAAACTCACCGGAGGAACTGCTGATGCATCTACTACACTTTGCCACCAGGGGGCAGGGTGGCATTCCTAAGTGCTGCGTGAAGACATCTATGGACATTCCCACCAAtctgctgaggagaggagagcagagatgcaGTTGAGCAATGGTGTCTACTGCATGTGAAAGGGAAGAAGCTATGTGCCCACCCCAAGATCAAGAGAAAGCTGAAGAGACTCCAGAGGAAGGGGCAGAAAAGGCAGAAGAGGCCTTAGTgctctgtggagggagggaactcGTTAATGTGCGGCAGCTTGACTTTTCTGTCATGTATTTTTATACTTTGTACTTGTTTATTATGAAGTGTTCTGGAGGAGTTTTTTAATTGCATTAGTATGTTATGTGTGTTAAGCAGAAATCTGTGGCGCATGTGTGCTTAAAGCTACTTGTAATCCATCAACTAATCAATGTCATTCATGAAATGGTTTCCTATGGAATAAAACGTGTAATATCATCAA
>XR_002475410.2
TATAGCTGTGGGGAAGGGCGGAGCTCCCTAGAGACGGCACGCTGTCTGGAGGATAACTTCCTGCCCACCCCCTGCTAGGTGGGAGACCCTGTGGATCTGAAGTAGAACGCTGTGCCGCAACCGGAGTCTGCTGTGACTCAGAGAGCTGTGTTCTAGACTCACACTGTTTTGGGGAGAGTCCGTACCACTCTCCTGCGGACCACAGCTCCAGAGCCACAAGAAACTCACCGGAGGAACTGCTGATGCATCTACTACACTTTGCCACCAGGGGGCAGGGTGAATACTAACAATCTCACTCTAGACTCGCTCACATTTGAATGATTCCAAATCAACACTTACTAACTAGCCTTTCACACTTCTTCAAGATTGGACATGTATCAGCTATATGGTGGCATTCCTAAGTGCTGCGTGAAGACATCTATGGACATTCCCACCAAtctgctgaggagaggagagcagagatgcaGTTGAGCAATGGTGTCTACTGCATGTGAAAGGGAAGAAGCTATGTGCCCACCCCAAGATCAAGAGAAAGCTGAAGAGACTCCAGAGGAAGGGGCAGAAAAGGCAGAAGAGGCCTTAGTgctctgtggagggagggaactcGTTAATGTGCGGCAGCTTGACTTTTCTGTCATGTATTTTTATACTTTGTACTTGTTTATTATGAAGTGTTCTGGAGGAGTTTTTTAATTGCATTAGTATGTTATGTGTGTTAAGCAGAAATCTGTGGCGCATGTGTGCTTAAAGCTACTTGTAATCCATCAACTAATCAATGTCATTCATGAAATGGTTTCCTATGGAATAAAACGTGTAATATCATCAA
>XR_002475411.2
TATAGCTGTGGGGAAGGGCGGAGCTCCCTAGAGACGGCACGCTGTCTGGAGGATAACTTCCTGCCCACCCCCTGCTAGGTGGGAGACCCTGTGGATCTGAAGTAGAACGCTGTGCCGCAACCGGAGTCTGCTGTGACTCAGAGAGCTGTGTTCTAGACTCACACTGTTTTGGGGAGAGTCCGTACCACTCTCCTGCGGACCACAGCTCCAGAGCCACAAGAAACTCACCGGAGGAACTGCTGATGCATCTACTACACTTTGCCACCAGGGGGCAGGGTGGCATTCCTAAGTGCTGCGTGAAGACATCTATGGACATTCCCACCAAtctgctgaggagaggagagcagagatgcaGTTGAGCAATGGTGTCTACTGCATGTGAAAGGGAAGAAGCTATGTGCCCACCCCAAGATCAAGAGAAAGCTGAAGAGACTCCAGAGGAAGGGGCAGAAAAGGCAGAAGAGGCCTTAGTgctctgtggagggagggaactcGTTAATGTGCGGCAGCTTGACTTTTCTGTCATGTATTTTTATACTTTGTACTTGTTTATTATGAAGTGTTCTGGAGGAGTTTTTTAATTGCATTAGTATGTTATGTGTGTTAAGCAGAAATCTGTGGCGCATGTGTGCTTAAAGCTACTTGTAATCCATCAACTAATCAATGTCATTCATGAAATGGTTTCCTATGGAATAAAACGTGTAATATCATCAA
>TU1152942
ATAACTTCCTGCCCACCCCCTGCTAGGTGGGAGACCCTGTGGATCTGAAGTAGAACGCTGTGCCGCAACCGGAGTCTGCTGTGACTCAGAGAGCTGTGTTCTAGACTCACACTGTTTTGGGGAGAGTCCGTACCACTCTCCTGCGGACCACAGCTCCAGAGCCACAAGAAACTCACCGGAGGAACTGCTGATGCATCTACTACACTTTGCCACCAGGGGGCAGGGTGGCATTCCTAAGTGCTGCGTGAAGACATCTATGGACATTCCCACCAAtctgctgaggagaggagagcagagatgcaGTTGAGCAATGGTGTCTACTGCATGTGAAAGGGAAGAAGCTATGTGCCCACCCCAAGATCAAGAGAAAGCTGAAGAGACTCCAGAGGAAGGGGCAGAAAAGGCAGAAGAGGCCTTAGTgctctgtggagggagggaactcGTTAATGTGCGGCAGCTTGACTTTTCTGTCATGTATTTTTATACTTTGTACTTGTTTATTATGAAGTGTTCTGGAGGAGTTTTTTAATTGCATTAGTATGTTATGTGTGTTAAGCAGAAATCTGTGGCGCATGTGTGCTTAAAGCTACTTGTAATCCATCAACTAATCAATGTCATTCATGAAATGGTTTCCTATGGAATAAAACGTGTA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005185 neurohypophyseal hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034736.1 False 718 mRNA 0.49 4 71445747 71452890
XR_002475410.2 False 826 mRNA 0.47 4 71445747 71452891
XR_002475411.2 False 714 mRNA 0.48 4 71445747 71452891
TU1152942 True 652 lncRNA 0.48 4 71445757 71452839

Neighbor

gene id symbol gene type direction distance location
LOC110536346 slc35d2 coding downstream 3357 71431838 ~ 71442390 (-)
LOC110536344 habp4 coding downstream 33969 71408354 ~ 71411778 (-)
LOC110536342 efna5 coding downstream 701612 70557009 ~ 70744135 (-)
smyd1b smyd1b coding downstream 1332705 70100122 ~ 70113042 (-)
LOC110536332 LOC106580566 coding downstream 1415327 70026208 ~ 70030420 (-)
ubox5 LOC106580617 coding upstream 6445 71459336 ~ 71466142 (-)
LOC110536349 LOC106580618 coding upstream 20268 71473159 ~ 71488892 (-)
LOC100135988 slr coding upstream 71972 71524863 ~ 71599164 (-)
LOC110536351 NA coding upstream 167909 71620800 ~ 71627496 (-)
LOC110536352 LOC106580621 coding upstream 175688 71628579 ~ 71633063 (-)
G1013649 NA non-coding downstream 37853 71406953 ~ 71407894 (-)
G1013653 NA non-coding downstream 38885 71405643 ~ 71406862 (-)
G1013654 cdc14b non-coding downstream 40144 71404672 ~ 71405603 (-)
G1013651 NA non-coding downstream 48831 71396691 ~ 71396916 (-)
G1013648 NA non-coding downstream 49687 71395834 ~ 71396060 (-)
G1013668 NA non-coding upstream 54467 71507358 ~ 71509002 (-)
G1013729 NA non-coding upstream 158559 71611450 ~ 71611739 (-)
G1013740 NA non-coding upstream 164455 71617346 ~ 71617552 (-)
G1013741 NA non-coding upstream 165420 71618311 ~ 71618518 (-)
G1012814 NA other downstream 554756 70884476 ~ 70890991 (-)
G1011014 NA other downstream 2139319 69305336 ~ 69306428 (-)
G1010922 NA other downstream 2326261 69116507 ~ 69119486 (-)
G1010443 NA other downstream 2757785 68687257 ~ 68687962 (-)
G1009720 NA other downstream 3474419 67971071 ~ 67971328 (-)
G1013669 NA other upstream 44417 71497308 ~ 71515434 (-)
G1013960 NA other upstream 543190 71996081 ~ 71996688 (-)
G1014411 NA other upstream 906394 72359285 ~ 72359505 (-)
G1014639 NA other upstream 993763 72446654 ~ 72449340 (-)
rnft2 rnft2 other upstream 2850759 74303648 ~ 74312488 (-)

Expression


Co-expression Network