XLOC_028469 (osgep)


Basic Information

Item Value
gene id XLOC_028469
gene name osgep
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5327632 ~ 5333971 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055256
caacattcactaatgcattgttaacatcaaaactcatgcttgttaactttagttaatgcaccctgagttaacatgaactaacaatgaacaactattTAATTAAGGTTAACATGAACaagtactgtaataaatgtgttgtaaTTGCATTAACTTatacaaacttattgtaaagtgttacccgaattgtgtgtatgtatatatatatgaagaaatACTTTTTCATACTGATGTTAAGAGTTATCAAAAGCCTAAAGATGACTTTCATCAGATGATTCCcgtttctctctctctgcagacACAATGACGATAGTGATTGGTTTTGAAGGCAGTGCTAATAAGATCGGCATTGGTATTATTAAAGATGGAGAAGTGCTGTCAAACCCAAGACGAACTTACATCACCCCACCTGGACAAGGGTTCCTACCGGGCGAAACTGCCAAACACCATCGCAGTGTGATCCTCACGGTCCTCCAGGAGGCTCTCGATGAAGCAGGCCTGAAAGCTGCAGATATTGATTGTGTCGCGTACACAAAAGGGCCTGGAATGGGGGCTCCGCTGGTGACAGTAGCCATTGTGGCCAGGACAGTCGCCCAACTGTGGGGCAAGCCGCTGTTGGGAGTCAACCACTGTATTGGGCACATAGAGATGGGCCGATTGATCACCAATGCCCAAAACCCCACTGTACTGTATGTGAGCGGAGGAAACACTCAGGTCATTGCATATTCTGAACGACGTTACAGAATATTTGGAGAAACTATCGACATTGCTGTGGGAAACTGCTTGGATCGGTTTGCCCGGGTCATTAAGATATCAAATGATCCCAGTCCCGGATACAACATTGAACAGATGGCAAAAAAGGGCAACAAGTATATCGAGCTGCCATACACAGTCAAGGGGATGGATGTGTCATTTTCTGGGATTTTGTCCTATATCGAGGACGCCGCTCACAAAATGTTGAGTACAGATCAGTGCACGCCTGAGGATTTGTGTTTCTCCCTTCAAGAGACTGTGTTCGCTATGCTGGTGGAGATCACAGAAAGAGCCATGGCCCACTGCGGCTCTCAGGAGGTCCTGATTGTCGGTGGAGTCGGCTGTAATCTCCGCCTGCAGGAGATGATGGGGGTCATGTGTAAAGAACGAGGCGCTCGAATTTTTGCCACAGATGAGAGCTTTTGTATCGACAACGGAGCCATGATTGCACAGGCCGGTTGGGAAATGTTCCGCTCTGGTCACGTGACCGAGCTTCCAGACTCCTGGATTACACAAAGGTACAGGACAGATGAAGTGGAGGTCACATGGCGAGACTGATGTGTGCAGTGCCTGATGTTTAccaatttaaatgtcattaatcaTGCTCTAAATGTCACATTGCAGTCAATAAATTCTGTTATTCATCTTTA
>TCONS_00055257
ACGCTTAGAGCCGTCCCAAATATTGCCTGACCGAAATATAAgtttaaaaattgtttgtttaaaaaaaattgagtttttgTTTTATACTTGAGAAAAGTATGATTATATGTTCACTTtcagtgtatttatttaatagtattaCTTTATTTCTACATTTTGTCCCCATCACAGTTGTCCAGGCACTTTAAAAACGACATTGACCGTTGTTATGGTCCTGCTTTCAACGAGTGTGCGacACAATGACGATAGTGATTGGTTTTGAAGGCAGTGCTAATAAGATCGGCATTGGTATTATTAAAGATGGAGAAGTGCTGTCAAACCCAAGACGAACTTACATCACCCCACCTGGACAAGGGTTCCTACCGGGCGAAACTGCCAAACACCATCGCAGTGTGATCCTCACGGTCCTCCAGGAGGCTCTCGATGAAGCAGGCCTGAAAGCTGCAGATATTGATTGTGTCGCGTACACAAAAGGGCCTGGAATGGGGGCTCCGCTGGTGACAGTAGCCATTGTGGCCAGGACAGTCGCCCAACTGTGGGGCAAGCCGCTGTTGGGAGTCAACCACTGTATTGGGCACATAGAGATGGGCCGATTGATCACCAATGCCCAAAACCCCACTGTACTGTATGTGAGCGGAGGAAACACTCAGGTCATTGCATATTCTGAACGACGTTACAGAATATTTGGAGAAACTATCGACATTGCTGTGGGAAACTGCTTGGATCGGTTTGCCCGGGTCATTAAGATATCAAATGATCCCAGTCCCGGATACAACATTGAACAGATGGCAAAAAAGGGCAACAAGTATATCGAGCTGCCATACACAGTCAAGGGGATGGATGTGTCATTTTCTGGGATTTTGTCCTATATCGAGGACGCCGCTCACAAAATGTTGAGTACAGATCAGTGCACGCCTGAGGATTTGTGTTTCTCCCTTCAAGAGACTGTGTTCGCTATGCTGGTGGAGATCACAGAAAGAGCCATGGCCCACTGCGGCTCTCAGGAGGTCCTGATTGTCGGTGGAGTCGGCTGTAATCTCCGCCTGCAGGAGATGATGGGGGTCATGTGTAAAGAACGAGGCGCTCGAATTTTTGCCACAGATGAGAGCTTTTGTATCGACAACGGAGCCATGATTGCACAGGCCGGTTGGGAAATGTTCCGCTCTGGTCACGTGACCGAGCTTCCAGACTCCTGGATTACACAAAGGTACAGGACAGATGAAGTGGAGGTCACATGGCGAGACTGATGTGTGCAGTGCCTGATGTTTAccaatttaaatgtcattaatcaTGCTCTAAATGTCACATTGCAGTCAATAAATTCTGTTATTCATCTTTA

Function

symbol description
osgep Predicted to enable N(6)-L-threonylcarbamoyladenine synthase activity and metal ion binding activity. Predicted to be involved in tRNA threonylcarbamoyladenosine modification. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleus. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 3. Orthologous to human OSGEP (O-sialoglycoprotein endopeptidase).

GO:

id name namespace
GO:0002949 tRNA threonylcarbamoyladenosine modification biological_process
GO:0008033 tRNA processing biological_process
GO:0000408 EKC/KEOPS complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0061711 N(6)-L-threonylcarbamoyladenine synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7880 Predicted to enable N(6)-L-threonylcarbamoyladenine synthase activity and metal ion binding activity. Predicted to be involved in tRNA threonylcarbamoyladenosine modification. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleus. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 3. Orthologous to human OSGEP (O-sialoglycoprotein endopeptidase).

Ensembl:

ensembl_id ENSDARG00000045846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055256 False 1400 mRNA 0.45 11 5327632 5332814
TCONS_00055257 True 1339 mRNA 0.46 12 5327632 5333971

Neighbor

gene id symbol gene type direction distance location
XLOC_028468 si:ch211-214j24.15 coding downstream 10626 5304208 ~ 5317006 (-)
XLOC_028467 snap91b coding downstream 24766 5260941 ~ 5302866 (-)
XLOC_028466 ada2b coding downstream 80297 5225552 ~ 5247335 (-)
XLOC_028465 tmem209 coding downstream 218691 5094007 ~ 5108941 (-)
XLOC_028464 ahcyl2b coding downstream 235297 5025625 ~ 5092335 (-)
XLOC_028470 si:dkey-14d8.1 coding upstream 28938 5362909 ~ 5371639 (-)
XLOC_028471 NA coding upstream 87775 5421746 ~ 5459469 (-)
XLOC_028472 NA coding upstream 94347 5428318 ~ 5441954 (-)
XLOC_028473 BX324164.5 coding upstream 164259 5498230 ~ 5538752 (-)
XLOC_028474 NA coding upstream 211031 5545002 ~ 5553182 (-)
XLOC_028462 NA non-coding downstream 359921 4962957 ~ 4967711 (-)
XLOC_028461 NA non-coding downstream 364740 4940467 ~ 4962892 (-)
XLOC_028450 FP102892.1 non-coding downstream 811124 4514438 ~ 4516508 (-)
XLOC_028446 CU468826.1 non-coding downstream 952928 4321168 ~ 4374704 (-)
XLOC_028444 NA non-coding downstream 1117168 4207590 ~ 4210464 (-)
XLOC_028478 NA non-coding upstream 359199 5693170 ~ 5745885 (-)
XLOC_028479 NA non-coding upstream 401399 5735370 ~ 5737345 (-)

Expression


Co-expression Network