LOC110536349 (LOC106580618)


Basic Information

Item Value
gene id LOC110536349
gene name LOC106580618
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 71473159 ~ 71488892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622096.2
CTCGGCGTCTTCTGGAGTTTGCAGTGACTGCTGGGAATCTGAGGCCCGACTGAGCGACCGCCCTTTTTAGACGAACGAGAGAAGAGCAACGCTGCAAGTGTCGGGAAAGAGCTATACGCAAAAACAACTTAATAAAGCGGCAGAACGTAACTTGAGGTGAGGGGCTGAGCCATGGCAGATAAGGGTGAGGGGTGTGGTAGTCAGTTCCCAGACCATTATAAAGTCATGCTGGACAAACTGAATGAACAGAGACAGCTGGACCAGTTCACAGACATCACTCTCATAGTAGACGGACACCAGTTCAGGGCCCATAAGGCAGTGTTAGCAGCGTGCAGTCAGTTCTTCCACAAGTTCTTCCAGGACTTCACACAGGAGCCACTAGTGGAGATTGAAGGAGTGAGTAACTCAGCTTTCCGCCAGCTGATGGAATTTACGTACACAGCTACGCTGGCTGTCAGTGGGCCAGAGGAGGTCAACGACGTGTGGAAGGCAGCAGAGTACCTCCAGATGCAGGAGGCCATCAAGGCCCTCAACAACAGgATGGGTGATGGCACCCTTTTCCAGCTATCCCAGACTCTGGTGGCAGGGAATAGCAAGGCCAAGAAGAGGAAGATATCTGAGATTCTTCCCTCAGTGGAGGGGGAGCAGGTGGAGATTGAGGTGGAGATCGGGGAGGGTACCATTGAGGTGGAGGAGACGGGgctggaggaggtggtggatgCTGCTCGGAACACCCAGGCAGTCTCGGATGACTCTGCCCTGGCTCTGCTTGCTGACATTACCAGCAAGTACCAGCAGGGGGGGCTAACGCTGCACGTCCTGAAGAAGGAAGGACTGAAGGAGgAGATGGTGTATCAGGAGGAGACGGTGACACCACCCAAGACTCTCGAGAGTCTGGAGATGGTCGAGGTCCAGATCTCTCAGCTGGACAAGATGTTCCGCTGCAACAAATGTGACCGCAGCTTCCGCCTCTACTACCACCTCAAACAGCACATGCGCGCCCACATGGCTGCGCTGGACAAGCCTCATGCGTGTTGCCACTGCGGGAAGGCGTACACGCGGGAGGGGGCGCTTAAACAGCACCTGAACACGTTACATTATGAGGCGGAGGAGCTGTCGCGCAGCCAGTCCCAGAAGAAGAAGACACACGTGTGCGAGTACTGTGACAAGCAGTTTGACCACTTTGGACACTTCAAGGAGCACTTACGAAAGCACACTGGTGAGAAACCGTTTGCTTGTCCAGACTGCCATGAGCGCTTTGCCAGGAACAGCACATTGAAATGTCACATGGCTGCCTGTCAGAACGGCGCCGGGGCCAAGAAGGGACGCAAGAAACTCTACGAATGTCAGGTGTGCAGCAGTGTGTTCAACAGCTGGGAGCTGTTTAAAGACCACCTGACGACACACACGGGAGAAAAGCCTAACCATTGCACCATGTGTGACCTCTGGTTCACCCAGCCCGACGACCTCCGCCGACATCTCCGCGACCTGCACGGCGTCACAGACGACAAGCTGATAACCCAGGAACTGGTCATTGCCGCCGCGGCAACGCAAGAGGAAGTGGccagggaggggaagggaggcaAGAGGGAGACCCTTCTACTAGAGGACGGGATAAGCGTGGAGCATGTTACCGTGGAGCCCGTAGGTGTGGTAGCATTGGTGGAAACAGCCATGTTGGTAGATGGGGAGGTGACCGAGATGTGTGAGGAGGACATAGAGAGACTGAAGGAAGCGGGTGTTGAGATCCGGGTGCTGCAGGTGTCAGCAGAGGGACAGGTGAACTCTGAGATCCAGGTGGAAGGGAgcgaggtggaggtggaggaggattcGCAACCGGCTATTGCTGTATGAAGCGGGAGCGGGGCGACATCTCAAATCATACCCTATTCCCCATAAATACACTGCCTTGGCTCTGGccacaagtagtgcactgtatgggGAATACGGTTTTATTTTAGATGTGCGCTGATTTTTGTCAAACTGGAAAAGCTCCCCCTTACCCCCTTCACCCTATGAAATAATAGGGTAACGGACAGACGAGGATTGGATGTTACTCATATTTCTAGAGGGTATTTATTTGGAGCCTGATGTCAtggctctgtcttcctctgtctgtggCAGAGAGAGACCGGCTGAATGCCTTCACAATGAACCCGTTCAAGGTTTCGTTTCAATCTTTTTTCTTGTTGCTTTCTTTTGTTTTTTACACTTTAGGATGTACATTTGAGATGATCAATATTAATTTGCTAAGACAATATGCCATCCATAAAGATCCCTACTCATTTCTATGGTGTCACCAGCAGACACCATTTATTGATTGGGATGCACCGTGTGTTAAACTGTCATACGGCTGCAGACATATGGCTGATATGCCTCACTGATGACGCCACATATTTCCCAGTTTCAACCCATCTGAAGCACAGCTCTGTTTGTCGAAAAATAATTCAGAGCTTGACAAAAGAAAGAGCATGTTTGTAATGGTGTCCAGCCCCTAACTGGTAAAAATAACTTTATTTTATTAACCTTTTAATCAGTTTGTTTATCAGAATAATAGCTGTTAGCGTGCTTacgtttgccccccccccccccccccccaattcccTGCTTCTTCCTGTCTACCTCTTCCTACTTCCTGTTCTGACTGCAGCCCACTAAACACTGGGTTTTATGTATGACACTGTTACAGCATGATGCTCCTCAGAAACAGAAGTAAGTAAGTATTAAGTGAAcacgttttgtttgtttttatttgacACATGTTCATAGTTGTATTGTTTTATATGTACAGAGCAATAAAGAAGTGATGTAATCAATACATTTGGAATTCTCAAAA

Function

NR:

description
zinc finger protein 131-like

GO: NA

KEGG:

id description
K24806 ZBTB35, ZNF131; zinc finger and BTB domain-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622096.2 True 2836 mRNA 0.51 9 71473159 71488892

Neighbor

gene id symbol gene type direction distance location
ubox5 LOC106580617 coding downstream 7017 71459336 ~ 71466142 (-)
LOC110536347 NA coding downstream 20268 71445747 ~ 71452891 (-)
LOC110536346 slc35d2 coding downstream 30769 71431838 ~ 71442390 (-)
LOC110536344 habp4 coding downstream 61381 71408354 ~ 71411778 (-)
LOC110536342 efna5 coding downstream 729024 70557009 ~ 70744135 (-)
LOC100135988 slr coding upstream 35971 71524863 ~ 71599164 (-)
LOC110536351 NA coding upstream 131908 71620800 ~ 71627496 (-)
LOC110536352 LOC106580621 coding upstream 139687 71628579 ~ 71633063 (-)
LOC110536354 LOC106585207 coding upstream 349410 71838302 ~ 71846693 (-)
LOC118937382 NA coding upstream 953077 72441969 ~ 72442889 (-)
G1013649 NA non-coding downstream 65265 71406953 ~ 71407894 (-)
G1013653 NA non-coding downstream 66297 71405643 ~ 71406862 (-)
G1013654 cdc14b non-coding downstream 67556 71404672 ~ 71405603 (-)
G1013668 NA non-coding upstream 18466 71507358 ~ 71509002 (-)
G1013729 NA non-coding upstream 122558 71611450 ~ 71611739 (-)
G1013740 NA non-coding upstream 128454 71617346 ~ 71617552 (-)
G1013741 NA non-coding upstream 129419 71618311 ~ 71618518 (-)
G1013745 NA non-coding upstream 147592 71636484 ~ 71636756 (-)
G1012814 NA other downstream 582168 70884476 ~ 70890991 (-)
G1011014 NA other downstream 2166731 69305336 ~ 69306428 (-)
G1010922 NA other downstream 2353673 69116507 ~ 69119486 (-)
G1010443 NA other downstream 2785197 68687257 ~ 68687962 (-)
G1009720 NA other downstream 3501831 67971071 ~ 67971328 (-)
G1013669 NA other upstream 8416 71497308 ~ 71515434 (-)
G1013960 NA other upstream 507189 71996081 ~ 71996688 (-)
G1014411 NA other upstream 870393 72359285 ~ 72359505 (-)
G1014639 NA other upstream 957762 72446654 ~ 72449340 (-)
rnft2 rnft2 other upstream 2814758 74303648 ~ 74312488 (-)

Expression


Co-expression Network