XLOC_002847 (ift46)


Basic Information

Item Value
gene id XLOC_002847
gene name ift46
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 29735900 ~ 29744921 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005275
GGTGAACACCTCGCGAGATCAAGTTTCCTTGGCAACAGTACACCGTCTTGTTTTCATGGAGAGGTCCGAGCGACAAAAGATCCAACTCACAACCAACCAGCCGTACGACGAAAGCTTTGAGGTAAACGCAGAGGAGGCGGCCAGTGTTCACACACCATCCCCAAGACAGATTGTGTCCAGGAGGACGGGTAGGCAGAAGCAGAGCACCATGTCCGGTTATGCTGGTGAGAAACTCGAAGAAGACACTAAGAGAAAGAAAGAGCCACCACCTGGTCCCCGCGGTGCTAATAAGAATGATGAAGaagaagatgaggatgatgatgatgacgacgatgatgatgattcTGATGACACAGAATCtgatgaggaggaagaggagcCAGGATCTGCTCCAGAAGGTGCTTATGACCCGGCTGATTACGAGCATCTTCCTGTGACAGGCGAGATCAAAGAGCTGTTTCAGTATATCACAAGATACACTCCACAGACGATAGAGCTTGACCACAAACTGAAACCCTTTATCCCCGATTTTATCCCAGCTGTGGGAGACATTGATGCTTTCCTCAAAGTACCACGGCCTGACGGAAAGCCTGACAATCTGGGTCTGCTGGTTCTGGATGAGCCGTGCACTAAACAGTCAGATCCGACAGTGCTTTCCCTGTGGCTCTCAGAGAACAGCAAACAGCACAACGTCACAGAAGTGAAAATTAAGAGCATTGAAAACCCTGAGAAGAACCCTAAAGCTATAGAAAACTGGATTGAGAGCATTAGCGAGCTGCATCGCTCCAAACCTCCAGCTACAGTTCACTACACAAGGCCCATGCCAGACATTGACAGCCTGATGCAAGAGTGGCCGTCTGAATTTGAGGAACTTCTGGGGAAGGTGAATCTCCCCACAGCAGACATAGATTGCGATTTGGCAGAGTATGTTGACATGATCTGTGGAATTCTGGACATCCCAGTGTACAAGAACCGAATTCACTCACTTCATGTCCTTTTCACACTCTACTCTGAATTCAAGAAGTCACAGCACTTTAAATCTGCAACAGATGGACAAAAATCTGACACACCACCTGCTTCACGTTCTGCCACCGCTGAGATAGAAAGACTCACTCTGGACTGAGGTCGCCCTTTTGCCCTATTTTCTTACATCCTGTTTTGTTCTAAGCCGTTTGTCGATGCTGCGTTGTGTTATTACATCTTTATTGTATGAACTGTTGATGTTTGGGTTTGACACACTGATGTCTCATGACAAGATTGTGATGTTGTAATCACTACAGTTTGAATAAAAACTTCCCTTTTGAACTATAGAACGGAAACGTGTCTTCGAAATGTATCAAATCTACTACACGACTTAAATATTTAGCAGTTTGCAATAAGCTGATTTTGGTTTCATTGAATGTGAAACCTGTAATCTGAAAACAGGATgaactttcttttttctttttaaatatatgccAGTATTATGATTAatactctaaaatatattctttcttTATAtgcctgggtaaaaaacaacaactgttgttcccattgaacacaatatattgatttataatattttggaacagtaaacatgtcaggctaaataa
>TCONS_00005276
TGGGAGACATTGATGCTTTCCTCAAAGTACCACGGCCTGACGGAAAGCCTGACAATCTGGGTCTGCTGGTTCTGGATGAGCCGTGCACTAAACAGTCAGATCCGACAGTGCTTTCCCTGTGGCTCTCAGAGAACAGCAAACAGCACAACGTCACAGAAGTGAAAATTAAGAGCATTGAAAACCCTGAGAAGAACCCTAAAGCTATAGAAAACTGGATTGAGAGCATTAGCGAGCTGCATCGCTCCAAACCTCCAGCTACAGTTCACTACACAAGGCCCATGCCAGACATTGACAGCCTGATGCAAGAGTGGCCGTCTGAATTTGAGGAACTTCTGGGGAAGGTGAATCTCCCCACAGCAGACATAGATTGCGATTTGGCAGAGTATGTTGACATGATCTGTGTTTAACCTGCCAGGAATTCTGGACATCCCAGTGTACAAGAACCGAATTCACTCACTTCATGTCCTTTTCACACTCTACTCTGAATTCAAGAAGTCACAGCACTTTAAATCTGCAACAGATGGACAAAAATCTGACACACCACCTGCTTCACGTTCTGCCACCGCTGAGATAGAAAGACTCACTCTGGACTGAGGTCGCCCTTTTGCCCTATTTTCTTACATCCTGTTTTGTTCTAAGCCGTTTGTCGATGCTGCGTTGTGTTATTACATCTTTATTGTATGAACTGTTGATGTTTGGGTTTGACACACTGATGTCTCATGACAAGATTGTGATGTTGTAATCACTACAGTTTGAATAAAAACTTCCCTTTTGAAC

Function

symbol description
ift46 Acts upstream of or within animal organ development; cilium assembly; and determination of ventral identity. Located in ciliary basal body. Is expressed in several structures, including forerunner cell group; nervous system; otic vesicle; pronephric duct; and spinal cord neural tube. Orthologous to human IFT46 (intraflagellar transport 46).

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0048793 pronephros development biological_process
GO:0048264 determination of ventral identity biological_process
GO:0060271 cilium assembly biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0030992 intraciliary transport particle B cellular_component
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-080102-3 Acts upstream of or within animal organ development; cilium assembly; and determination of ventral identity. Located in ciliary basal body. Is expressed in several structures, including forerunner cell group; nervous system; otic vesicle; pronephric duct; and spinal cord neural tube. Orthologous to human IFT46 (intraflagellar transport 46).

Ensembl:

ensembl_id ENSDARG00000011240

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005275 False 1592 mRNA 0.44 12 29735900 29744921
TCONS_00005276 True 777 nonsense_mediated_decay 0.45 7 29736186 29739108

Neighbor

gene id symbol gene type direction distance location
XLOC_002846 si:ch73-261i21.2 coding downstream 2706 29731060 ~ 29733194 (-)
XLOC_002845 CU861448.1 coding downstream 27718 29708068 ~ 29708182 (-)
XLOC_002843 NA coding downstream 244813 29266270 ~ 29491087 (-)
XLOC_002844 tmem126a coding downstream 463143 29269998 ~ 29272757 (-)
XLOC_002842 ccdc83 coding downstream 499040 29226180 ~ 29236860 (-)
XLOC_002848 vps11 coding upstream 6108 29751029 ~ 29768556 (-)
XLOC_002849 si:ch73-261i21.5 coding upstream 48896 29793817 ~ 29809105 (-)
XLOC_002850 hist2h2l coding upstream 70723 29815644 ~ 29816467 (-)
XLOC_002851 zpr1 coding upstream 75251 29820172 ~ 29831944 (-)
XLOC_002852 bsx coding upstream 145614 29890535 ~ 29892486 (-)
XLOC_002841 BX005332.1 non-coding downstream 597896 29128202 ~ 29138004 (-)
XLOC_002838 BX537347.1 non-coding downstream 812267 28923517 ~ 28923633 (-)
XLOC_002837 BX537347.2 non-coding downstream 813649 28922135 ~ 28922251 (-)
XLOC_002854 CT737197.1 non-coding upstream 786222 30531143 ~ 30531257 (-)
XLOC_002858 NA non-coding upstream 1517931 31262852 ~ 31295006 (-)
XLOC_002862 NA non-coding upstream 2332890 32077811 ~ 32084624 (-)
XLOC_002863 NA non-coding upstream 2471492 32216413 ~ 32250846 (-)
XLOC_002867 NA non-coding upstream 2839764 32584685 ~ 32591462 (-)

Expression


Co-expression Network