LOC110536357 (LOC106580709)


Basic Information

Item Value
gene id LOC110536357
gene name LOC106580709
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 71874071 ~ 71877057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622104.2
CAGGACCAGTGAGCGCCCCGACCGTCAAcaaacacatgcgcacacacacactggtaccaGTACGCGTCATGCGTCCTCGGAACGAGGGAACAGGCACAGGAACTCCGATGGACCCCGGTAGAACTTACACCGGCGCCAGCACGAGGGACTGACTGAGCCTCCAGGTTTGCCATTTGGTTACCTTGTCCAGTCCTACCGGACGCGCCTATCGGGTGTCCCATGCCCCTGACGCACTATGGATTTTATAAACAACGTCAGTGACAACAGCAATTCGACCACAGACTTCCCCGACGTCGTGGATGTCATTCCAAAGTGGGGAGACAATGAGAATGCAACGGGGTCTAGAAGTGTGCCTGAGGTGGAGCTGAGTTACCAGGTGGTCACCTCTCTGCTGCTCGGCGCGCTCATCCTCTGTTCCATATTCGGCAACGCGTGCGTCGTCGCCGCCATTGCGCTGGAGAGGTCGCTCCAGAATGTGGCCAACTATCTGATCGGCTCGCTAGCCGTTACAGACCTCATGGTATCAGTTCTGGTACTACCCATGGCAGCCCTCTACCAAGTCCTGAACAAATGGACTCTGGGACAGGAGATATGTGATATATTCATCTCCCTGGACGTGTTGTGCTGCACGTCGTCCATTCTGCATCTGTGCGCAATTGCCCTGGACAGGTACTGGGCTATCACGGACCCCATAGACTATGTGAACAAAAGGACACCCAGGCGAGCAGTGATGTTAATCAGCGTGACTTGGCTGATTGGGTTCTCAATCTCCATCCCTCCAATGTTAGGCTGGAGGAAAGCCGAGGACAGGGCGAACCCGGACGCCTGCACCATCAGTCAGGACCCGGGTTATACCATCTACTCCACGTTCGGAGCATTTTACATCCCACTTATCCTCATGCTGGTCCTCTACGGGCGGATATTCAAGGCAGCCAGGTTCCAGGTTTGGAAAACTGTGAAGAAATCGGAAAAGGTAAAAGTGTCGGACAAGTGCTTGGCCGTGTCGCCGGCTATTTTCCACAAGAAGATTAATGGAGAGGCGGGGGGCAAGAATTGGAAGCGCAGTGTGGAACCTACATTCAACTCCCCGTGCGTAAACGGCTCGGTGAAGCACGGGGAGGACGGCGAGTCGTTGGAGATCATAGAAGTGACCAACAATTCTAAGAACCACCTTCCTCTCCCCAACACTCCACAGTCCTCACAAGGGTTTGAGAACAGGAACGAAAAGAACACGGAGGCTAAGAGGAAAATagctctgtccagggagaggaaaACGGTAAAGACGCTCGGTATCATCATGGGCACTtttattttctgctggctgccctTTTTCATCGTGGCGCTGGTCTTGCCTTTCTGTGCGGAGAGTTGTTACATGCCAGAGTGGCTGGGCGCCGTCATCAACTGGCTGGGCTATTCGAACtctctcctcaaccccatcattTATGCCTACTTTAACAAAGACTTCCAAAGTGCTTTCACTAAGATCATAAGATGCAAATTCCACAGACCGTGAGACATTTCGTCGTAAAGTGTTAGCGTTAACTTCCAATGAGTTAATGAAACAGAAAAAATAAACATGTTATTTTCAGGGACAGTCTCTAGCCTACGGTGTGAATTAGAAACAGAATAGCCTACGGCACATATACAGTGAGacgtggagagagacaggaagtatGTTTGCATATGCTGTGTAAGCTGCTCCTGTCTAGCATATGCGATATTGTAAATATCTGCCAGGCATCGTATTCCCATGCAAGATGTGTCATTCAAATACAAATGTTCTGAATTCTTGCATTGCCATCCACGAGACACGCGCGCCGCGTTGCGACTACGACGCGAGGGTTTCTGTCCTAGATCACACCAAGCTTTGTAGCACAGAAACAATAAAAAAACGATCGAAAAACTACAACTTCTGATTGTAACGTCTACTCTTTGCGCACAAAAATAGGAAAGCGTTCAATGACATtcgtaaaaagaaagaaaaggaaGAAAATACAtatgaagagtttatttccaaaacgctatattCATATATTTTCCCACATTTGTGGgtttttttcattaaaaaaaaggaTTGCGTACTGGCACcatcatgtgtgtgtaaaatatgacTGTTCTCTGGATTCTTggattttaaatgtgttttttttgcaaaacgctatatatccatccattgtttagctggaatggaatgttcatatcctgtacatttgattgtgatatgtggttgtctcacctagttaTCTTAAAGATGAAGGTActtactgtaaatcactctggataagagcatctgctaaatgacaaaaatgtcaaatgtaaatgttttacatacagatacCATATTACTCTATTGAATTCTTTTTtgaacatttttaaaacattgatatcacaaatgtatcatttgtacagTCCTTTATTAAAAATGTAGTTATTTGTGACATTTGACTGTGTacaacctagcagtactacttatttctgAGAGTGAGGCGGATATATAGCATTTTAAAAAAAGCATGATTATTTGTCTCTTTGAAGTGAAACCACCAAGTGAAAAAAGATAAACAAATACATGtatgtcattgaacaaccccatgccatgattagataatgAAAAAATACACCTATTTCtttcatattttatttcaacAATAAAATCTCATTTACAAActtttctgaaaatggatatatagcattttggaTGAAATTTCATATTTTGAGATTAAATTATCTGAGTATAATCTATCATTCTGGAATTATTAAATTTCACGAACGGAGAGGCAAACTCTTTATGCAATGTTGAGTGAATCATAGATCAAATACGGACACAGACAGTATAGTATATATTGGACTGAATATGAAGTGGATTTGGGAGGTGTGAGATATTTATGTTAGTGGGTGAGAGAGCTATGTATTGATCTGCACAGTAAAGAGGTATTGAGTTAAACAGTTCCAACTTCTATCAACTCTATCTAAGGCAAAATGAG
>TU1153218
AGCGCAGTGTGGAACCTACATTCAACTCCCCGTGCGTAAACGGCTCGGTGAAGCACGGGGAGGACGGCGAGTCGTTGGAGATCATAGAAGTGACCAACAATTCTAAGAACCACCTTCCTCTCCCCAACACTCCACAGTCCTCACAAGGGTTTGAGAACAGGAACGAAAAGAACACGGAGGCTAAGAGGAAAATagctctgtccagggagaggaaaACGGTAAAGACGCTCGGTATCATCATGGGCACTtttattttctgctggctgccctTTTTCATCGTGGCGCTGGTCTTGCCTTTCTGTGCGGAGAGTTGTTACATGCCAGAGTGGCTGGGCGCCGTCATCAACTGGCTGGGCTATTCGAACtctctcctcaaccccatcattTATGCCTACTTTAACAAAGACTTCCAAAGTGCTTTCACTAAGATCATAAGATGCAAATTCCACAGACCGTGAGACATTTCGTCGTAAAGTGTTAGCGTTAACTTCCAATGAGTTAATGAAACAGAAAAAATAAACATGTTATTTTCAGGGACAGTCTCTAGCCTACGGTGTGAATTAGAAACAGAATAGCCTACGGCACATATACAGTGAGacgtggagagagacaggaagtatGTTTGCATATGCTGTGTAAGCTGCTCCTGTCTAGCATATGCGATATTGTAAATATCTGCCAGGCATCGTATTCCCATGCAAGATGTGTCATTCAAATACAAATGTTCTGAATTCTTGCATTGCCATCCACGAGACACGCGCGCCGCGTTGCGACTACGACGCGAGGGTTTCTGTCCTAGATCACACCAAGCTTTGTAGCACAGAAACAATAAAAAAACGATCGAAAAACTACAACTTCTGATTGTAACGTCTACTCTTTGCGCACAAAAATAGGAAAGCGTTCAATGACATtcgtaaaaagaaagaaaaggaaGAAAATACAtatgaagagtttatttccaaaacgctatattCATATATTTTCCCACATTTGTGGgtttttttcattaaaaaaaaggaTTGCGTACTGGCACcatcatgtgtgtgtaaaatatgacTGTTCTCTGGATTCTTggattttaaatgtgttttttttgcaaaacgctatatatccatccattgtttagctggaatggaatgttcatatcctgtacatttgattgtgatatgtggttgtctcacctagttaTCTTAAAGATGAAGGTActtactgtaaatcactctggataagagcatctgctaaatgacaaaaatgtcaaatgtaaatgttttacatacagatacCATATTACTCTATTGAATTCTTTTTtgaacatttttaaaacattgatatcacaaatgtatcatttgtacagTCCTTTATTAAAAATGTAGTTATTTGTGACATTTGACTGTGTacaacctagcagtactacttatttctgAGAGTGAGGCGGATATATAGCATTTTAAAAAAAGCATGATTATTTGTCTCTTTGAAGTGAAACCACCAAGTGAAAAAAGATAAACAAATACATGtatgtcattgaacaaccccatgccatgattagataatgAAAAAATACA
>TU1153219
ggataagagcatctgctaaatgacaaaaatgtcaaatgtaaatgttttacatacagatacCATATTACTCTATTGAATTCTTTTTtgaacatttttaaaacattgatatcacaaatgtatcatttgtacagTCCTTTATTAAAAATGTAGTTATTTGTGACATTTGACTGTGTacaacctagcagtactacttatttctgAGAGTGAGGCGGATATATAGCATTTTAAAAAAAGCATGATTATTTGTCTCTTTGAAGTGAAACCACCAAGTGAAAAAAGATAAACAAATACATGtatgtcattgaacaaccccatgccatgattagataatgAAAAAATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622104.2 False 2987 mRNA 0.44 1 71874071 71877057
TU1153218 False 1565 lncRNA 0.39 1 71875129 71876693
TU1153219 True 342 lncRNA 0.29 1 71876352 71876693
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110536356 LOC106580708 coding upstream 22574 71846931 ~ 71851497 (+)
LOC110536646 NA coding upstream 47180 71825904 ~ 71826891 (+)
LOC110536353 LOC106580623 coding upstream 76756 71738585 ~ 71797315 (+)
LOC110535107 LOC106580620 coding upstream 136869 71637227 ~ 71737202 (+)
LOC110536350 NA coding upstream 358642 71507354 ~ 71515429 (+)
LOC118937396 NA coding downstream 137366 72014423 ~ 72019253 (+)
LOC118937397 NA coding downstream 487931 72364988 ~ 72365641 (+)
LOC110536360 LOC106580626 coding downstream 571993 72449050 ~ 72452661 (+)
LOC110536648 LOC106580710 coding downstream 718300 72595357 ~ 72596915 (+)
LOC110535108 LOC106580629 coding downstream 836933 72713990 ~ 72754402 (+)
G1013582 NA non-coding upstream 30231 71781976 ~ 71843840 (+)
G1013617 NA non-coding upstream 33189 71838302 ~ 71840882 (+)
G1013534 NA non-coding upstream 160362 71713430 ~ 71713709 (+)
G1013485 NA non-coding upstream 246575 71627180 ~ 71627496 (+)
G1013927 NA non-coding downstream 5895 71882952 ~ 71896736 (+)
G1013949 NA non-coding downstream 98467 71975524 ~ 71984399 (+)
G1013957 NA non-coding downstream 117455 71994512 ~ 71995470 (+)
G1013959 NA non-coding downstream 119021 71996078 ~ 71996615 (+)
G1013963 NA non-coding downstream 127889 72004946 ~ 72005946 (+)
G1013375 LOC106580618 other upstream 399440 71473426 ~ 71474631 (+)
G1012975 NA other upstream 829467 71044259 ~ 71044604 (+)
LOC110536338 LOC106580595 other upstream 1743220 70128401 ~ 70134490 (+)
G1013922 NA other downstream 2239 71879296 ~ 71879672 (+)
G1014834 NA other downstream 883464 72760521 ~ 72760945 (+)
LOC110535110 LOC106579812 other downstream 1290546 73155366 ~ 73254792 (+)
G1017593 NA other downstream 3423281 75269723 ~ 75328737 (+)
LOC110536406 LOC106570821 other downstream 4611451 76396096 ~ 76600566 (+)

Expression

LOC110536357(LOC106580709) Expression in all Baseline Samples

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LOC110536357(LOC106580709) Expression in each Bioproject

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LOC110536357(LOC106580709) Expression in each Sample
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Co-expression Network