LOC110536362 (LOC106580628)


Basic Information

Item Value
gene id LOC110536362
gene name LOC106580628
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 72650659 ~ 72704404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622109.2
ACCCGGGGCATTAATCAAATCCCCTCACTGGCATATGAACTCACATTGAGGGTGTGTCTCCCTTACTCTCTCAATGCGAAATAATAGACTGCAGCCTTGTGCTCAAGTCAACTTTGCTCTTTCCCGCTCGTACTCCAATCTCACTAATCACGTTATGTTGGCGGTTTAGCTAAGGGTGCGAAGGAGGCACCAGAGTTCAAAGTTGTTGCTGTGTTAATTTGTTTCTGTGTTGGTAGATTTCTGTGTTCTATTTGCCTTTGAAAAGAACGGGAGAGTTGTCATTGGATTAAGTTGTATTTGTCGCTATGGGAGACGTGATTTCGAGCCACCTGGATGAGGGCAAACGGGAGATCATTACAGCCAGGACAGGCGAGGTGATTGGAGAGTTTAGCCGTCTGTATGAGCAACAGTATGCAGTGGCCCTTTTCAACAAGGTCCGCTTTGACATCGAGGGAGGAGGTGGGCCCCAGCCACAGCTACTGCACCGCAAGGTTCCTCTGGAGAATAGATCCATCTTCTCTGGAGCTCTGTTCCAGTTTCTGGAGGAGAATAATAAATGGAGAAACCACTTCATCTTCGTTCCTGACTCCTACACTATCAACTACTATGACAACAAAGCGTCTCACGAGAGAGGGCTTCACCCCAAGGGGAACATCAACTGTGCTGGGTACAAAGTGCTGACTTCAATGGATCAGTACCTGGAGCTGCTCAACAACAGCCTGCCTGGTGTAAAGGCTAAAGTGGGTAACTCTCCCTTCCTGAAGTGTGCCACCCAGTTCCCCCTGATCCTGTGGCACCCGTACGCCCGCCACTACTACTTCTGTGTGGTGACGGAGAAAGAACAGCAGAAGTGGCATGCAGTCTTTCAGGACTGTGTAAGACATGCCAATGATGGTTTATCAGAGGAGAGCCAGGTGCAGACTCCGGCCTTCACAGACGCAGTGAGGCTCTACCGCCAAGCCCACGGGCAGTATGGCACCTGGGAGATGATGTGTGGGATCCCCTCACAGATTCTGGCCAACCTGGTGATGGAGACTCTTCTCCCTGAGCTCAGGGATCTGATCTCCCCTCGACTCAAAGGCAAAATGCACGACAGGCAGAGGAACTGGATGCTAGTCTGCGACGCGGTGTATGGTCTGGTGGTGAGGCAGGCCCAGGCCCAGTACGAGGCTGTGGTGCAGAGCTGTGAGGCCCGACGCCCTCCTCTAGAGGCCTCCATACGCACAGACATGGACCAGATCATCACCTCCAAGGAGCACGTCGCCAACAAAATCAAAGCGGTGGTGCTGCCTAAGGCAGAGAAGCTGCTGACGGTTAGTATCCAGCCCTACATCAGCTCTATCCTGGAGGCCCTGATGGAGCCCACCAGCCGAGGCTTCTCTCAGGTCAGAGACGTCTTCTTCAGAGAGCTGGTGGACTTGAGCAAGAACACACTGAATGACGCCACCAATGAGAAAGTGGGAGAGCACATGGAGAAGATCTCTATGCTGGCGTTCCACCCGGTGAAGATGCAGAGCTGCTATGAGAAAGTAGAGGACCTGAGTCTGGATGGCCTGCAGCAGAGGTTCGATGTCTCCAGCCCCTCTGTGTTTGTCCAGAGAGCACAGATTCTCATGAGAGAGCAAATGGACGATGCGGTATACACGTTTGAGCAGATCCTCCACCAAAGTCTGGAGGACCAGGGGCCAGAGGGGCTCTGTAAGAACATCCAACGCTGCCAGGACCGGGTCATCAAGaaATTTGACTATGACAGCAGCACAGTCCGGAAGAGGTTCTTCAGAGAGGCTCTTCTTCAGATCTTCATCCCTTACATGCTGAAGCAGCTCACTCCCTCTTTATCCCCTGAGCTGCCTCGTTTCCAGGAGCTGATCTTCGAGGACTTTTCTCGTTTCATCCTGGTGGAGAACATCTTTGAGGAGGTGGTGTTGCACTCTGTCATGAAGGACATCATGATGGCTGTCAAGGAGGCAGCAGTCCAGAGAAGACACAACCTTTACAGGGACAGCATAGTGCTGACCAGCAGTGATCCCAACCTCCACCTGCTGGGGGATAACCCTGCCATCGACTGGGCTGGGGAGTATGGGACAGGACAGGAAGAGGTGGAGACTGGGGACAGCACAGGAGGGGCGGCCCAGAGGAGGCGCAGGATGAAGCAGGTAGTCTCTATGATCCAGCTGGATGGCTCTCCCATCCTGGAGTCCCGTCTGGACATCCCCATGGTGGACAGCATTCCTGAGGAGGGAGTGGAACAGCCTGAGGAGGGAGTGGACCAGGACACCGATGCCCCCTCATCTCCAGAGAGGGTCCACCAGGAACCAGCCAAAGTTAATGGAACCAGTCTGAAAGGAAAGAGAAAGGCCCCTCCTCCTCCAGTCCAGCCAGAGAACATTCCATCCCCTGCCCTAACCAATGGCTCTGTCCTAGAAGGTGAGCCGGCGACAATCTTGAGTGAGGCCCCAGAGATACAGACCAAAATCTCAGAAGATTTACCCCAGGAAGATGAGTGTGCGATGAAGTCCCCAGAGGCTAAGAGCTTTTTACACGACCCTGAGAGCACAGCGTCAGCCATCGAGAGTGCCATACGGGAGATTGACAATGCAGTGCAGGGAGAGGACAGCGAGCCAGCTGGAGGCAGTGTACTGGAGGCAGTGACAGAAGTTTCACCCTCAAGCCAGGATAGCGTACCCTTTAGCAAAAAGGAGGAATCTTTAAAACCAATTCAGCAGGAGGCTCTGGCACCAACAGCTTTTAGCCAAGAGGAAAGCACTCCTTCCAGTTTAGAGGAGGTATCGTCCTCACTCTCTACTCAGACTGGGGTAGCAGCAACACCCGTAGCAAAAGAGGAGATCCCCACACCAACAACCCTGGACAGCAAGCAAATCCCTGCAGCCATACCAACAGAAATGCCTAAAGCCATACCAACAGCCCTGGAGACGGAGCAAGTCCCTGTCCCAGAACCAATGCCAGGGGAGCTAGAGAGCGCTTCAGTAGTCAGACCAGAGTTGGAACAGGCCACAGTGGATTTGGACTCCCTGTCCCCGCCACATGACAACAGTGGCTTCCAGTCTCTCACCAGTGAGGCAGTGAAGAAGGATGCTGCCCCCAGTACAGAGGGGCCAGAGGCAGTAGAGGTGGTCCCTGAGGCAGGGGGTGATGGAGTGACTGTGGTCCAGTAGGGAACAGCAGAGCGAATGACTGGCCCAGTAGGGAATGGCAGCACAGAACAATGACTCTGAGACCGGAAAGGTGGAGAAGGAATCCAGGAAGGCAGAGAGTCAGTGAGGAATTCATCTTCGTTTAGGCTGTATGCTGGCATTGATTTAGATGTGGGGGGGTTTCTGAAGACAGgcatattatactatattaaccTAATCTCACAAAAGCATAGACAATTTAATACATGGAAAATGGTTTGTATACAGTAGTTTTCCATTAGATCAACTGATGTGGTTTACACCTTCAAGATAATTCTAATAAATTCTAAACTTTTTTGTTGTACTAATATTATCTACCAATACTAAATCAGTCTGTACCTTAGGTGGGGCTCAAGTACAACTTGCATGTCTCTTGTTTTTGTGTTTCTATATTTCGACAGACATTCCAACTGATAAAGCATGTGCATTCCATTCAACCCACATTCCAGTTGATAACATGAACATTGTAGTCCGAGTGCCAGATGTTTGTGCGCTCATGCCAACTCATTGTCACTCATTTCATGCCAAacatggtttgataatgaatggaATTGACAAGCGCACAAACAaatttgggaccaggctatgtgTGTATTGCATTGCATTACATCCACACAAGGGGAACTCATTCCATGATCCTTTTTTAGTATATATTCACTGTGTAGTGAATGATGAGGACGATTGAAGGACCCAGTTGTCCTCGTCATGGTGTTCTGTAAATATGAAATCGCACAATTCAGGTGCTGTTCTTGGTTGTGTATACAAAATCTtagacaccttcctaatattgagttgcaccccctttcccCTCAGAGCCGCCTCAATTCGTTGgctcatggactctacaaggtgtcatgcgttccacagggatgctgacccatgttggctccagtgcttcccacagttgtcaagttgttttgggtggtggaccattcatgatacacacaggaaactgttgagtgtggaaaaacccagcatcgttgcagttcttgacacaaatcggtgcgcctggcacctactaccacttCCCGTTCCAAGATGCTTAAATCtggtcttgctcattcaccctctaaaCGGCACACatccacaatccatgtctcaaggcttaaacaacttctttaacctgtctcctccccttcagctaTACCGATTttgaagaggatttaacaagtgacatcaataattgatcatagctttcacctgtatttacctggtcagtttgtcatggacaggacaggtgtccttaatgttttatacaccgCGTATAATGTTCAGTGGCATCATTGATTTGTTTAAAGTTTGCTTAGTAAACCCTCTGATCTGCACTGCTGCTCCACCAGTTGGCTTAACCCTGAATCTACATGCTGTCTAGCGTGCTGCTTACCCACGGTGTTAAATTGTATTTCGATTGGACCACGGCAAGGTGTGCAAAGCTAGAGCTAGCCATAGCGAAATACAAATGAGTATTTATTCCATAGATTCAACAACCAATATGTCCTTTGTTATCTTATTGGTGTTTGTTTGTATGTCCCACTACTTTCATACAGTTGCTCTCTGAAGTTTCCTGTCAGTTTAATATGTCTTATTATCAGAGGACTTCAAATACTTTTGTAATCGTGCTTCAGTCTTCAATAATCTTCTGGGATATTTGATGGAAAGGTGCCTGGGAATCGAGCAATCCATGTCTCATGGAATACAGGAAAACATTGCATTCAAAGTAccttttctattttctatttcaAATTGTCATTTCAATCTGTCAAATATAATGATAGGCACAACTGTTCTGTTATATCATGGCATGGAAATCATAGCAAAATACAACATCAAATGAGTAATGCTATTTGATATGTTGTCCTTAATATTTTACAAGTTATTATTGATATGACTGGGAATACCTCAGTTCTGACATTGAATGGTTCCTAACAGAAAAGGcctctgtacatacagtattaaatACATTGTTGGCCCTTTTCACCACCATAGTCATTCGTTTTGCAAAGACTATAGTACAAATTACATATCTTCAGTGCCTTCATTGATATGcatgttttttcccccttctaTTTATGATGTATTGCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCCCAACCCACACTGCCTTATGTCCACAACACAACCCGTTTGATGAGGGtacttttagatttgttttacTCAATGTTATACAGCAGACTTATTGATTTCATAAATAATTAAGTATGTTGGTCTGTTATGGTTTTCCTTTGGAACACACAGGTTTGTTAAAGGGGGCAATCTGGGAATTGAAACACAACCGTGGGCATCCTGACACTACTGTTGGCAAACAGGTGAGGGATGGGAATGGAGAAATGTTACCACTCAAATTCCAAAATGGATGTGCCAATCGCAGATTGCCCTCTTTTTAAATTGTTGTTGGGTTCATGTGGAGCAGTATTTAAGCTTGCATTCACATTGACTGTCATAATTCCTCATGTATTTTTCTCCATTGTTTGAAagcaatgtaattgtaaacatggttaaaagttgaaataaaaacaaatcaaTATGGTTAAAATGTA

Function

NR:

description
niban-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622109.2 True 5948 mRNA 0.48 14 72650659 72704404

Neighbor

gene id symbol gene type direction distance location
LOC110536361 LOC106585212 coding downstream 3339 72597787 ~ 72647320 (-)
LOC110536359 LOC106580625 coding downstream 66598 72452920 ~ 72584061 (-)
LOC118937382 NA coding downstream 207770 72441969 ~ 72442889 (-)
LOC110536354 LOC106585207 coding downstream 803966 71838302 ~ 71846693 (-)
LOC110536352 LOC106580621 coding downstream 1017596 71628579 ~ 71633063 (-)
LOC110535109 LOC106580631 coding upstream 58596 72763000 ~ 72842417 (-)
LOC110536649 LOC106580712 coding upstream 145286 72849690 ~ 72859975 (-)
LOC110536363 LOC106579794 coding upstream 170072 72823917 ~ 72883883 (-)
LOC110536366 LOC106585221 coding upstream 223772 72928176 ~ 73062269 (-)
LOC110536368 LOC106579816 coding upstream 364928 73069332 ~ 73094829 (-)
G1014685 NA non-coding downstream 88122 72560090 ~ 72562537 (-)
G1014684 NA non-coding downstream 91381 72558383 ~ 72559278 (-)
G1014681 NA non-coding downstream 94433 72555611 ~ 72556226 (-)
G1014674 NA non-coding downstream 104635 72545416 ~ 72546024 (-)
G1014510 NA non-coding downstream 205262 72444922 ~ 72445397 (-)
G1014822 LOC106580629 non-coding upstream 31610 72736014 ~ 72750311 (-)
G1014826 NA non-coding upstream 37042 72741446 ~ 72741860 (-)
G1014830 NA non-coding upstream 47563 72751967 ~ 72753372 (-)
G1015068 NA non-coding upstream 50892 72755296 ~ 72755543 (-)
G1015069 NA non-coding upstream 51461 72755865 ~ 72756169 (-)
G1014639 NA other downstream 201319 72446654 ~ 72449340 (-)
G1014411 NA other downstream 291154 72359285 ~ 72359505 (-)
G1013960 NA other downstream 653971 71996081 ~ 71996688 (-)
G1013669 NA other downstream 1135225 71497308 ~ 71515434 (-)
G1012814 NA other downstream 1759668 70884476 ~ 70890991 (-)
rnft2 rnft2 other upstream 1599246 74303648 ~ 74312488 (-)
G1017417 NA other upstream 2185995 74890399 ~ 74891140 (-)
G1018159 NA other upstream 2664044 75368448 ~ 75368826 (-)
ckap2l LOC106570813 other upstream 3539312 76202025 ~ 76246958 (-)
G1019056 NA other upstream 3840704 76545108 ~ 76545741 (-)

Expression


Co-expression Network