LOC110535109 (LOC106580631)


Basic Information

Item Value
gene id LOC110535109
gene name LOC106580631
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 72763000 ~ 72842417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936342.1
ACACTGAGATGAACGATAAACAACCAGCTTTTCCACTTCGGTTTCTATAATTATCgaagagaggtacagagaggacaATTTGCGAACAGTTTTCACCCAGAAAACCCTGAAGAATATATTAATGTGACAATTTTTTTATTGCTTGTGATTGTCGCGTAAAATGCGCGCGCTTGTGATGCATCTTCTTGGATATCCAGGATCATATTCCGTTGAATAAAACTTGTGACCCGACAATAAATATTCCTAATCTGCACGAGTATTTATAGCAACTTTTGAATCAATTATTTTCTCACCATCCTCTACCACGCACCTTCACACAAAACCGGACTCTATATAAATAGATGAAGATAGAAGATGCGACGACAATGGTAAGCAGATAGTATTTGACCCTACCTACAAACATCGGAACCATTACAATTTTTAAATGTGACTTCCTCCAAGAATCGCGGTGCGGTCACCTATGTTTTCGGAGCGGAGTGACATCTACAGAATTATTATAAATGCCTGATTATCGGACCATCTCTGTTTGCGGTGCGGTGTTTACGTTAAAATTGTAGGATGATGAACAGTGATTTGGAGCACGTTTCACTCAATTCAACGACGGCCAGCAACTCAGGGACTGGGTCGGGCGGCCGAGGGCTGTCAGCCAACGTTCGGAAGCTGCACAACGCGCTCAACTTGCTGCTCACTGACTTCGAGAGAGAACAATTCATCCACTGCCTCAATGTTTACCACGCTAAACGCAACGTCTTCGACTTGGTTCAAACTCTCAAAATAATCCTCAACACGCCGAACAAACGACAACTCCTCCCCATGTTGCGTTTGGTCATTCCCCGCTCAGATCAGCTGTTGTTCGACCAGTATACTTCCGAGGGCCTGTACCTTAAAACGGATCATCTACCACTAAACAGTGTCAACAACCCTGAAAGCTTTGGAGGAGTAGGCAATACTGCTGTTGGAGAGATCCGCGAAGTGACACTGAGACGCAGCAAGAGCAATGAGGGCTTAGGGTTCAGTATCCGGGGAGGTTCTGAGCACGGTGTGGGAATCTATGTGTCGCTAGTAGAACCCGGATCTTTTGCCGAGAATGAAGGACTGAGGGTCGGGGATCAGATAGTGACTGTTAACGGCATGCTGTTTGACAGAGTCTCACACATGGAAGCAGTCAAGGTCCTGAAAGGCTGTAAGAAGCTGGCCATGTCAGTTTGTTCAGTAGGCCGGATCCCCGGGGGGTATGTCACCAACAACATTTATGCCTGGGTGGATCCTCATGGCCGCAGTGTGTCCCCTCCCTCCGACCTGGAGCAGCAAAGCACCCTGGGACCACAACACAGCCAGAGACgtacaggacacacacaggagaagacAGTAAACCTGAACCTGGACGATGGTCTCTCTCTGGGCCTGATGATCAGAGGAGGGGCGGAGTATGGCCTGGGTATCTACATCACTGGGGTAGACCCCGGCTCAGCTGCAGACCACGGGGCACTCAAGgTGGGCGACCAGTTGCTGGAGGTGAATGGGCGGAGCTTCGTGGCCATCCCCCATGACGAGGCGGTGAGGATCCTGAAGACGTGTCGTCACCTGCTGGTGAGGGTGAGGGACGTTGGCCGCGTGCCCCATGCCCGCACCGTGGTGGACCAGACCAAATGGATCAGCAGCCCCATCACCCCTAGCCCACCGCCCATAACAGAGAGCACCGCCAGCCCAGCCGCTACACGGCCATCTTCAGCGCGGGCTACACCTGTATTAGGAAAGTCTTTTTTCATGTgggttcattcattcattccctccccccacccctccttctatccctccaaTCAGTctgtgtgtcaaggtgtggggcCCCTGGGTTTCCAGGTGTCTCTGGAGGAGCAGGCCTTCCTGCTGCtgacagacccagagagacagaccatGGGCTACTACCTGCGGGAGTACCAGGAGGGACACATCGGCCTGGAGCCCCTGACCATGGCCCTGTTTGAGCTCTTCAATACTCGTGCCAAGtTGTCCCTGCTATCTGAGGTGCGTAGTCAGGTAGCTCCCCAGGAACTGGAGCTGTATGATGGCCTGGTGCTGCACCGCGAGAGGGAGGCTCTGAAGGCCTGGCACGGAGGAATAGGATCCCTACACCCTGTGCACCCATACAGCCGCTGTCTACACGCTGAGCCCTCAGCCAGCCACATCCACTCCAACCCGGCCACTCTCTGCTCTGCCAAGaaGGAGTGCTCACATGGTGACATTGTACAGCAAGATCCAGGGGCAACCACTAATGTCATACCTGACGTTACATTGAATGAAGTGCAGTCGACAGCTGAGTCTCCTCCGTTCTTCAAGCCGCCTCCTCCCCCCGGACCCGGACAGACCCAGCCCAGACATccgagggacagggagagggagcagtCCAAGCGCTTCTTATCCAGACACTCCCAATCTGGCCTGGTCTTTACTGCCCCCACCAGGCTGCACCAGGAATGTCACCACAAACACCTTAAAGCCTTCCAAAGCTTCTCCAACCACCAAACGTCCAACTCCCCTAGCTCTGAGCTCCATCACATCTGTCCCAACCCTGGCCATCATAATAGCTCCAACCCTGGCCATCATAATAGCTCCAACCCTGGCCATCATAACAGCTCCAACCCTGGCCATCATAACAGCTCCAACCCTGGCCATCATAACAGCTCCAACCCTGGCCATCATACTACCCCCAACCCTGGCCATCATACCACCCCCAACACTGGCCATCATACCACCCCCAACACTGGCACTGGCCATAGCGTCTATCCAAGCTCTGGCAATGACACATCCATGAACTCTCTTCACCACACCTGCCAAAGCTCCCTCCACATCTCCACAACTACCTCCTCCGACCACCACACCCCCCAAACACACCACGGCTGCTCCAGCTCCGGCCACCATTCCTGCCCTGGCTCCCCTCATCCCAAGCACTCTGGTCCTCAGAACAAGGACACATTCATCAAGCTTCCCATCTTCAGATCCTGCTCCCATGAGAAGCCTCTGTCAGACAGTGGTCAGACTCTGAGTGAGGACAGTGGGGTGGACATTGCTGAGGCACGAGGGCTCAGTAAAGACAGCAATCCTTGGCCAACTAAGAACCAGGCCAGCCAGGCCACACAAGGGCCCCATGGGGCCCAGGGGTCTGCAGTACTGGCATCCAAACAGCAGCCCGGCTCTCCAGTGCCCATACTTACTCTGGTACGTGTGGTAAAGAATGCCAACACTCTGGGCATTGCTATAGAGGGAGGTGCAAACACACGGCAGCCACTGCCACGCATCGTCACcgtacagaagggGGGCTCGGCACACAGTTGTGGGCAGCTGAAGGTGGGACAGGTGATTCTGGAGGTGAACGGGGTCTCCCTGAGGGGTAGAGAGCACCGGGACGCTGCTCGCATCATCGCTGAGGCCTTCAAGACCAAAGAGAAGGACCACATTGACTTCCTGGTTACCGAGTTTAACACAGCCCTACTGCAAGGCCTTTAGCGGGGTCGTATTTAGGCTCCACACAGAAGAAAAGAGACTGAAGGGACCACCTGAACAAGAAGGGACCTCCTGAACTAATGCTTGTTCCCATTTTCCTGCAGGGGCTTCAGCAGGACTTTGCACTTTAGAGAGCTGGAAcagatggaggaaggaggagaaagagagaacggaaggAGGGAGAAGTTTGATGGAGTGTTGCACCTGGGGACAAAATAAAGACAATCCGTTATTCTCCTGTAAGCCCCTTCTCCCTTCCCACATTGTTGTCCCTATATACCAACTTACCAGGCTGGCCATGTAGTGTTAAAAAGCTAAGACATCCTGCCTTAAGAAGAACCCACCGATagaacacacagttgaagtcggaagtttacatacacttaggtttgtgTCATTAAAACtgatttttcaaccactccacacatttcttgttaacaaactgtagttttgacaagtcggttaggaca
>TU1154567
CCTCATGGCCGCAGTGTGTCCCCTCCCTCCGACCTGGAGCAGCAAAGCACCCTGGGACCACAACACAGCCAGAGACgtacaggacacacacaggagaagacAGTAAACCTGAACCTGGACGATGGTCTCTCTCTGGGCCTGATGATCAGAGGAGGGGCGGAGTATGGCCTGGGTATCTACATCACTGGGGTAGACCCCGGCTCAGCTGCAGACCACGGGGC

Function

NR:

description
PREDICTED: whirlin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936342.1 False 3971 mRNA 0.53 13 72763000 72842417
TU1154567 True 221 lncRNA 0.61 2 72799712 72801368

Neighbor

gene id symbol gene type direction distance location
LOC110536362 LOC106580628 coding downstream 58596 72650659 ~ 72704404 (-)
LOC110536361 LOC106585212 coding downstream 115680 72597787 ~ 72647320 (-)
LOC110536359 LOC106580625 coding downstream 178939 72452920 ~ 72584061 (-)
LOC118937382 NA coding downstream 320111 72441969 ~ 72442889 (-)
LOC110536354 LOC106585207 coding downstream 916307 71838302 ~ 71846693 (-)
LOC110536649 LOC106580712 coding upstream 7273 72849690 ~ 72859975 (-)
LOC110536363 LOC106579794 coding upstream 32059 72823917 ~ 72883883 (-)
LOC110536366 LOC106585221 coding upstream 85759 72928176 ~ 73062269 (-)
LOC110536368 LOC106579816 coding upstream 226915 73069332 ~ 73094829 (-)
ppil3 ppil3 coding upstream 414621 73257038 ~ 73260745 (-)
G1015071 NA non-coding downstream 1324 72761170 ~ 72761676 (-)
G1015072 NA non-coding downstream 2279 72760284 ~ 72760721 (-)
G1015070 NA non-coding downstream 5740 72756514 ~ 72757260 (-)
G1015069 NA non-coding downstream 6831 72755865 ~ 72756169 (-)
G1015068 NA non-coding downstream 7457 72755296 ~ 72755543 (-)
G1015154 NA non-coding upstream 64369 72906786 ~ 72908763 (-)
G1015279 NA non-coding upstream 305061 73147478 ~ 73147750 (-)
G1015371 NA non-coding upstream 312987 73155404 ~ 73155865 (-)
G1015378 NA non-coding upstream 321670 73164087 ~ 73164363 (-)
G1015387 NA non-coding upstream 337035 73179452 ~ 73179677 (-)
G1014639 NA other downstream 313660 72446654 ~ 72449340 (-)
G1014411 NA other downstream 403495 72359285 ~ 72359505 (-)
G1013960 NA other downstream 766312 71996081 ~ 71996688 (-)
G1013669 NA other downstream 1247566 71497308 ~ 71515434 (-)
G1012814 NA other downstream 1872009 70884476 ~ 70890991 (-)
rnft2 rnft2 other upstream 1461233 74303648 ~ 74312488 (-)
G1017417 NA other upstream 2047982 74890399 ~ 74891140 (-)
G1018159 NA other upstream 2526031 75368448 ~ 75368826 (-)
ckap2l LOC106570813 other upstream 3401299 76202025 ~ 76246958 (-)
G1019056 NA other upstream 3702691 76545108 ~ 76545741 (-)
G1015082 NA non-coding upstream 20789 72822157 ~ 72833974 (-)

Expression


Co-expression Network