LOC110536649 (LOC106580712)


Basic Information

Item Value
gene id LOC110536649
gene name LOC106580712
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 72849690 ~ 72859975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936266.1
CTTGTATAACGCAGCAGCTGTCCACTCCAGGTTGAACCAGTTGGACAAAGCCAGAGACATCCTGCTCTCAGCCTCCCAGGAGAAATGAGGAGGGGGGCGAGGACTGAACGTGGAGGTGGCTTTACACAGTATCTCTAAGGGAGAGGTGCTGCCCGTCCTCCTGGTGCCAGAGGGAGAGGTGTTCCGGCCCAGGAAACAGGACGTAGAacagctgggacagagagacttcCTGGGCAAACCAATGGTTAAGTAAAACCACACCACACTGATGTACACAGGCACAGTAACATagagtacatcccaaatggcaccttattccttatatagtgttctacttttgatcagggccctatgggatctggtcaaaagtaatgcactatgtaggtaacagggtgccattggggacatATTTATAGTGACATAtcgctgtgtgtgtgcttgcctgtgtgtccgtgtgtgtgtgtcaatcgaATCAGGCCTCTTCCTGTGCTTTCAGGTAATTTCCTCAATGATTCCCAATGATGACTTTGGTGGATTTGAACCTCTCAGGACCAATAAACCGGGATACTACGAGCCCAAGGTGGATAGAGTGGAGGAATCTCGCTACATGCGTCTGCGTAACCCCTACATGTCCCAAGCCCCTGGGCAGCTGACGGTGCCTGGGGGAGCCATAGTGTTTCTTTTcagtgatacagacagagatggacTGGCCATGGTCATACatgatggacagAAAGGACTTGTCCCCATGACCCTGCTGGACCCAGTGGATGTCAACAAGTCCAAAGGCAGAAAACAAACAAAAAGTATTCCCAGTGGGATCCCCCTCCCACCGGGGCTCAAGCCGCCCACTCGCCCACAGAGCCAGCTTAGCCACGAAGAACCTCCACAGGTGAGGCCTGATAGAGAGGCATCTCCACCCTCCTACCTACCAACCACCTCCACCCCGTCACCCAGGTACCCATCCACGATGGACAGTCCTACTGAGCTGaCCGAGGACCCTCTGGCCAACTGTACCATTCTCTACCAGATGGTGGCACTGTGTGACTATGCAGCTGAGGGACCAGAGGATTTGGAGTTCAGCGAGGGAGACACTATTGACATTCTCAGTGAAGTCAATGAAGAGTGGCTGGAAGGTCACTGTGCTGGTAACATTGGCATCTTCCCCAGCCTTTTTGCCTACCGGGAAGGAGAGGCCCCCTCAACCATCGATCGGATGTTACTATCAAACAAGGAATAGGCTCAACTCTTGCTCACAGTTAACAACTTGATACTTTATTTATCTAATTCAAGTTAAAATGATGACGGCTGTCAACGGCCTTCATCAGAATCAGTACGGAGACGATGCAGCATGTCATCTCTTGGTGTGCTTCTGTGGTTGTCTGATGGAGGACTACATCATTGGGTTTGCTGCATGCCTGACCAAGCCACTGACATTTTCCATCCACTCAGAGGGAATAGAGTGGGCATTCTGAGTAGCATACTGGGTAGCATACTGGGTAGCATACTGGGTAGCATACTGGGTAGCATACTGGGTAGCATTTGACCAACAGGACAAACTTAAAGTGTTTCACCTCTTCTACTTACTGTCAACTGCTGTGAATGAATGTGGACCACTGTTATACTCTTATATGGTTGTTACTTCCTCCATGATCATGTAAACCTGTTAAACTAAAGACGA

Function

NR:

description
PREDICTED: neutrophil cytosol factor 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936266.1 True 1681 mRNA 0.50 9 72849690 72859975

Neighbor

gene id symbol gene type direction distance location
LOC110535109 LOC106580631 coding downstream 7273 72763000 ~ 72842417 (-)
LOC110536362 LOC106580628 coding downstream 145286 72650659 ~ 72704404 (-)
LOC110536361 LOC106585212 coding downstream 202370 72597787 ~ 72647320 (-)
LOC110536359 LOC106580625 coding downstream 265629 72452920 ~ 72584061 (-)
LOC118937382 NA coding downstream 406801 72441969 ~ 72442889 (-)
LOC110536363 LOC106579794 coding upstream 14501 72823917 ~ 72883883 (-)
LOC110536366 LOC106585221 coding upstream 68201 72928176 ~ 73062269 (-)
LOC110536368 LOC106579816 coding upstream 209357 73069332 ~ 73094829 (-)
ppil3 ppil3 coding upstream 397063 73257038 ~ 73260745 (-)
LOC110536370 LOC106579810 coding upstream 409207 73269182 ~ 73283107 (-)
G1015082 NA non-coding downstream 15716 72822157 ~ 72833974 (-)
G1015071 NA non-coding downstream 88014 72761170 ~ 72761676 (-)
G1015072 NA non-coding downstream 88969 72760284 ~ 72760721 (-)
G1015070 NA non-coding downstream 92430 72756514 ~ 72757260 (-)
G1015154 NA non-coding upstream 46811 72906786 ~ 72908763 (-)
G1015279 NA non-coding upstream 287503 73147478 ~ 73147750 (-)
G1015371 NA non-coding upstream 295429 73155404 ~ 73155865 (-)
G1015378 NA non-coding upstream 304112 73164087 ~ 73164363 (-)
G1015387 NA non-coding upstream 319477 73179452 ~ 73179677 (-)
G1014639 NA other downstream 400350 72446654 ~ 72449340 (-)
G1014411 NA other downstream 490185 72359285 ~ 72359505 (-)
G1013960 NA other downstream 853002 71996081 ~ 71996688 (-)
G1013669 NA other downstream 1334256 71497308 ~ 71515434 (-)
G1012814 NA other downstream 1958699 70884476 ~ 70890991 (-)
rnft2 rnft2 other upstream 1443675 74303648 ~ 74312488 (-)
G1017417 NA other upstream 2030424 74890399 ~ 74891140 (-)
G1018159 NA other upstream 2508473 75368448 ~ 75368826 (-)
ckap2l LOC106570813 other upstream 3383741 76202025 ~ 76246958 (-)
G1019056 NA other upstream 3685133 76545108 ~ 76545741 (-)

Expression


Co-expression Network