XLOC_028474



Basic Information


Item Value
gene id XLOC_028474
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5545002 ~ 5553182 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00058034
CTATCTCCAAGGATTTCCAAAGAGATTTGGAAAGATTATCCCAGTGTTGGTGGGCAAAGGATGTACATTTTTGGCTAAAACAGgcTGTATAGTCAGCTGACTGTCTGGCACTGTGCCTCAGTGACTGGCTGAGCTCAGCGCTGCTGCAACGTGCAGCTTGCCATGTCTGCTGTCGCTAAAGGAACCAGCTGCACAGAGAAACACAGCAAAGCACATCCATTCAAAAAACGAAATCTAATACTGAAGACTCCTGATCTTTTGAGACAATGTGTAATCAGATGCCCCACTGTTGTAGGAGCCTATCAATGTCAGAATCACCAGCTCTCCCAGACAGCCAGCTGGAATCACCCGCTGCCAAGATGATGTTAGACGGCTCTCCTTAGGAAACCTTGAAATTACCACCCAGGCTAAAAATAGTGGACTCGGTGCATGCTTTCAAATATCAGACGTCTAAACTGCTGCCGTTTGTGCACACATTTAACAGATCATTCTGGCTTTCTCTGAAGACCCTGATCACAGAATGTTCTAATTCATCTGACCGGTGTCCAGATGACCTCTTAGCAGACGTCTTCTGTTCCAGCTCTCACACCCAAGCTGATTAATGGAGATTGAGCTGCTCTCTA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00058034 True 623 lncRNA 0.47 4 5545002 5553182

Neighbor


gene id symbol gene type direction distance location
XLOC_028473 BX324164.5 coding downstream 6250 5498230 ~ 5538752 (-)
XLOC_028471 NA coding downstream 85533 5421746 ~ 5459469 (-)
XLOC_028472 NA coding downstream 103048 5428318 ~ 5441954 (-)
XLOC_028470 si:dkey-14d8.1 coding downstream 173363 5362909 ~ 5371639 (-)
XLOC_028469 osgep coding downstream 211031 5327632 ~ 5333971 (-)
XLOC_028475 vegfab coding upstream 15506 5568688 ~ 5597802 (-)
XLOC_028476 rsph9 coding upstream 92069 5645251 ~ 5652030 (-)
XLOC_028477 tmem63a coding upstream 112000 5665182 ~ 5691257 (-)
XLOC_028478 NA coding upstream 139988 5693170 ~ 5745885 (-)
XLOC_028479 NA coding upstream 182188 5735370 ~ 5737345 (-)
XLOC_028462 NA non-coding downstream 577291 4962957 ~ 4967711 (-)
XLOC_028461 NA non-coding downstream 582110 4940467 ~ 4962892 (-)
XLOC_028450 FP102892.1 non-coding downstream 1028494 4514438 ~ 4516508 (-)
XLOC_028480 NA non-coding upstream 185828 5739010 ~ 5739938 (-)
XLOC_028487 NA non-coding upstream 560259 6113441 ~ 6116670 (-)
XLOC_028488 NA non-coding upstream 624404 6177586 ~ 6252483 (-)

Expression



Co-expression Network