XLOC_028476 (rsph9)


Basic Information

Item Value
gene id XLOC_028476
gene name rsph9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5645251 ~ 5652030 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055273
ACATAGCAACCACTGTGTCACTGGAGAGAGTGGCTAATTAGCTTGCTAGCTTCAAGGGAACTTAATTCAGATCATTCAAGTATTAATCACAACTCTCTGGTAAATATAGATTGATTAGCGAATAGATCGAGATGGACTCTGATTCTCTGCATTACTCCCTGGATTTAGCTGCTGCTAATGGTTTGACTCTGAGCAGTGAACAGAGAGCCGCTCTTCAATCCTCTCTGCTCATAGTCAAGAGAAACTACAAATTCAGCCGGGTTTTGTTTTGGGGAAAGATTTTGGGAATAAAAAGTGACTATTTTATTGCACAAGGAGTTGAAGATGATGAACTGAAGAACAGGAAGTCTTTGTATAGTTTAAACTGCGTAGATTGGCACCTGCTCCCCCCAGCCACCGAGTCCATGATTGCAGATGTGGCATTAGCAGCAACGGGACGATTCACAGGCGACCCGTCCCATGAGTACGAGCACACAGAGATCCGCACAGAGGGCGAGGGGGACGAGGCTACACATGAAGAGGTCACGGTGAAAGTGATTGAAGCAAGTAGACTGGCTGCAATAGTGTCAAACATCGATAAAGACGTGTCTGTAGTCCCACGTGGTGCATTCATCAAGAGTCCCAATGGCAAAGTGCAGACAAACCGAAGCTTTGGAGGCCTTCATCCCACTGAGGCTGCAAAACTGCGCAACTACCTGCACTTCCGTGAGCCGGTTAACCTGAGGAACAAATCCATCTTGGAAATGTCTGAACTTAATCCTGCTCTTGACTTCCTAGATCCTTTGAGCGAAGACATTCTCAAAGGGTCATGGAGCCTGCAGCTGGATCGGGGCGGCACTGTGTGTGTATTACGAAGTTTACTATGGCTGGGTTTCACCTTCTTCCATGTTCCCCAGACTCCTCAACATGGGTACATATACATGGGAGATGGCCTCATGAACCTTGACCTGCCCTTCATGTTATAACAGCCAAAAGGACTTCAGCGACACAATCTCCATCCGGTGTTGGTGCCACATTTAAAAGAAACCAAAAGCATCAATCTTCCCCAGTGTTAATGTGACCTGGCTTACTTTCACTGTAATTgactttaatgttattttattttaggaaaacaTAAACATGCCACCATGTGTGAAAA

Function

symbol description
rsph9 Acts upstream of or within axoneme assembly and cilium movement. Located in axoneme and kinocilium. Is expressed in forerunner cell group; nervous system; pronephric duct; and spinal cord neural rod. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 12. Orthologous to human RSPH9 (radial spoke head component 9).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0044458 motile cilium assembly biological_process
GO:0035082 axoneme assembly biological_process
GO:0060271 cilium assembly biological_process
GO:0060294 cilium movement involved in cell motility biological_process
GO:0060091 kinocilium cellular_component
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0001534 radial spoke cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-051120-129 Acts upstream of or within axoneme assembly and cilium movement. Located in axoneme and kinocilium. Is expressed in forerunner cell group; nervous system; pronephric duct; and spinal cord neural rod. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 12. Orthologous to human RSPH9 (radial spoke head component 9).

Ensembl:

ensembl_id ENSDARG00000017355

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055273 True 1138 mRNA 0.46 5 5645251 5652030

Neighbor

gene id symbol gene type direction distance location
XLOC_028475 vegfab coding downstream 47449 5568688 ~ 5597802 (-)
XLOC_028474 NA coding downstream 92069 5545002 ~ 5553182 (-)
XLOC_028473 BX324164.5 coding downstream 106499 5498230 ~ 5538752 (-)
XLOC_028471 NA coding downstream 185782 5421746 ~ 5459469 (-)
XLOC_028472 NA coding downstream 203297 5428318 ~ 5441954 (-)
XLOC_028477 tmem63a coding upstream 13152 5665182 ~ 5691257 (-)
XLOC_028478 NA coding upstream 41140 5693170 ~ 5745885 (-)
XLOC_028479 NA coding upstream 83340 5735370 ~ 5737345 (-)
XLOC_028480 NA coding upstream 86980 5739010 ~ 5739938 (-)
XLOC_028481 faxca coding upstream 98824 5750854 ~ 5764255 (-)
XLOC_028462 NA non-coding downstream 677540 4962957 ~ 4967711 (-)
XLOC_028461 NA non-coding downstream 682359 4940467 ~ 4962892 (-)
XLOC_028487 NA non-coding upstream 461411 6113441 ~ 6116670 (-)
XLOC_028488 NA non-coding upstream 525556 6177586 ~ 6252483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_07116109_07120411 RSPH9 coding CI01000020 null 7116040 ~ 7120580 (+)