XLOC_028479


Basic Information

Item Value
gene id XLOC_028479
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5735370 ~ 5737345 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058037
actaaactctgcagagctgcggcccttttgcaactgagtttgacacctgtgttctaaaGTGACATGCGATGCACCTTCGTCGTTTGCAAACATTgataaatgttaaaacattgtttttcagccGCAGCCgcacttcattctcgaaatgtatagtttgtctacaATGATGTATACAAACAATATAGTATTCTATGAGCAGGGGTACAATCAGCCAGAGGAGTTGTAGCTCTGTAGTCAAAAtccacattttgtgtctgccggtttgtttactttcgggagttcattggcattttcccgcacgtgaattctgaccaatcgaaaagcagatGAGCaaatacgttcaataacatctggccaatgagggTTGTgggttttgtcacatgactgcattttggttcttttcaactagttcggaccaaagccagcagtgtggtgtgaaaaggacccaaagacggcagaaaatgctgcAATGTATCATtgattgcccttggtccggaccaaatgaaccgaaccagAGATGTCAAAGCACCCTTACAGTTAAATACAGTGTGATTAAGAAAAATCGTTAACAGTGATTGAATAAAGCTATGAAGTTTGGTGTAAAGTTGAGATTGATGGCTCTGTTTAGCAGATGCAAAAAATAACCAAGAAAACAGCcttgaaaaatatgtattgtgttggtgccagtggtgtagtggttactgcgtcgacacatgcactctggtgctcatggtgacccaagtttgattcccGCATTTTGGTCCtgtgccaatccttcccctccatatcaattaaaggtgaacaccctgtaaaaattattattaaaaaaaaacatgcatggtAATTAAATCTATGCACACCGATCGATAATGTGCAAAGACAGAAAgactaaaaatgtatttcaggTGCTTTCTTTCCATTAGAGTGAAGAAAAAACAATTCAGAAAAgccaaaaagtcttaaatctcaaaactGACAGGTGCATTTAAAAGCAAACAGTGTTTTTCCATCCAATGCCttccctcaaaaaaaaaattcatctctacatttttgagaaatgCTCCTGAGTTTTTGTTGCAATATGAAGAGCGCTCGTGTTAATTGAGTTGTAATTTTAAGATTCAGAAGCTTTAACACAGTCGTGCACGGCCAAGCAGAAAACACATTAGCTTAATAAAGTAATATGCAAACTATGGGCTGTTCAATTACACATACTAATAACGCATAAACGATGCCGGACCCGTTAAAGGGACAGAAAGAACCtgacgtttattattattaaacagttATCTCTGCTATAGTTTCACCAATCTCTGTTTGAGAGAATAAGAATTAACGGTGAATAATCCCAGCCATAAATTAGCAGTAATTATACCGACCCTGCGCTGGAGTTATTTAATTTCTCGTGGTTTAATTAGACAGGACCGTTGAGTAACTAAATGTTCcaattcaaaacatgatcacCGAggggatttttctttttttcagagatTTTTTTCATTGCATGATTAAAACAGTGAGCAGATATCCCTAACAGACAGACATCATGCATTATATCAGTATAAGCATTatataataaatcaacaatatttacttattaggcatgggatgataactgttttcaaggtgtagcaatttggaaaagtcaaggttttaaaaccggcaaAATTTTCTGCTGTACCAGTCCTGTGgtttgtgtaatttttttatttacattttttgattttttgacagtatctccagcagaaaagatatccaaagatggcgTTTTGAAttgtaaagatgctgttttaatatgtaatgatgccattttaatatgtaaagatgccattttaatatGTATAGGtgct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058037 True 1850 lncRNA 0.37 2 5735370 5737345

Neighbor

gene id symbol gene type direction distance location
XLOC_028477 tmem63a coding downstream 44113 5665182 ~ 5691257 (-)
XLOC_028476 rsph9 coding downstream 83340 5645251 ~ 5652030 (-)
XLOC_028475 vegfab coding downstream 137568 5568688 ~ 5597802 (-)
XLOC_028474 NA coding downstream 182188 5545002 ~ 5553182 (-)
XLOC_028473 BX324164.5 coding downstream 196618 5498230 ~ 5538752 (-)
XLOC_028480 NA coding upstream 1665 5739010 ~ 5739938 (-)
XLOC_028481 faxca coding upstream 13509 5750854 ~ 5764255 (-)
XLOC_028482 ccnc coding upstream 27141 5764486 ~ 5775507 (-)
XLOC_028483 pgm3 coding upstream 47625 5784970 ~ 5795309 (-)
XLOC_028484 foxm1 coding upstream 70619 5807964 ~ 5831522 (-)
XLOC_028471 NA non-coding downstream 275901 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding downstream 293416 5428318 ~ 5441954 (-)
XLOC_028462 NA non-coding downstream 767659 4962957 ~ 4967711 (-)
XLOC_028461 NA non-coding downstream 772478 4940467 ~ 4962892 (-)
XLOC_028487 NA non-coding upstream 376096 6113441 ~ 6116670 (-)
XLOC_028488 NA non-coding upstream 440241 6177586 ~ 6252483 (-)
XLOC_028491 NA non-coding upstream 839432 6576777 ~ 6580547 (-)
XLOC_028493 NA non-coding upstream 1283105 7020450 ~ 7024297 (-)

Expression


Co-expression Network