gtf2h2 (LOC100196672)


Basic Information

Item Value
gene id gtf2h2
gene name LOC100196672
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 77695841 ~ 77700928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622200.2
TCTGAAGTCGGAACTATTTTTTCCTTTAGACCATGTTTCCTGGGGCGGGAAGCTCTTCTGTTACACCAAACATGGTTGCTTCCTTCAGCAGATAATTCAGTTTTTGATTGAACTGCATTTGGAGGTTGACTCAATCAAGATGGACgaagagccagagagagccaaGCGTTGGGAGGGAGGTTATGAGCGAACATGGGAGATCTTGAAGGAGGACGAGTCTGGATCTCTCAAAGCCACTGTGGAGGAAATCCTTTTCCAGGCCAAAAGGAAAAGGGTGTTTGAGAGTCATGGACAAGTTCGTCTTGGGATGATGCGTCACCTGTACGTGGTAATTGACACCTCTAGAACCATGGAAGACCAGGACCTGAAACCCAACCGCCTCACCTCTACACTCAAgCTGGTGGAATATTTTGTTGAGGAATACTTTGACCAGAACCCCATCAGTCAGGTGGGCATCATCACCACAAAGAACAAGAGAGCGGAGAAGCTCACTGACCTGGCAGGGAACCCAAAGAAGCACATTGATGCCCTGAAGAAAGCAAAGGACTCTACGTGTGGAGGAGAACCCTCTCTATATAACTCCCTCAGCCTGGCCATGCAGACGCTCAAacACATGCCAGGCCACAGCAGCAGAGAAGTCCTCATCATCTTCAGTAGTCTCACCACATGTGACCCAGCTAACATCTATGAGCTGGTCAAGACTCTGAAGGCTCTGAAGATCCGTGTGTCTGTGATTGGCCTGTCAGCCGAGGTGCGTGTCTGCACGGTGCTCACCAGAGAGACCGGGGGGTCGTACCATGTGATCCTGGATGAGAGCCACTTCAGGGAGCTGCTGATGTTTCATGTGAAGCCTCCTCCTGCTACCTCCTCCTCCGAGTGTTCCCTCATACGCATGGGTTTCCCCCAGCACACCATAGCCTCTCTATCAGACCAGGATGCCAAGCCTTCTTTCAGCCAGGCCCATCTGGACAGCACTAGTGGTGGTCCCGGTCTGTCTATGGGAGGGTACTTCTGTCCACAGTGCCAGGCCAAGTACACTGAGCTACCTGTCGAGTGTAAAGTCTGTGGGCTGACACTTGTCTCCGCTCCTCATCTGGCTCGCTCCTTCCACCACCTCTTCCCCCTGGAGGCCTTCCAGGAGAGTCCTCTGCTGCTGCACCACACAGAGAGGTTCTGTGAAGCCTGCCAGGGGGAGCTGAAAGACAAGAGTGTGTTCACGTGTCCGTCGTGCAACAGTGTGTTCTGCGTGGAGTGTGACCTGTTCATCCACGACACGCTGCACTGCTGCCCCTCTTGCATCCACAGCCGCAGTGCCCCCTGAgatgctctggtcaaaaggagagGACTTTGTAGGACTTATGGGAAACCTCAGACAAGTGCCAATATACCTGCACACACTTTTTTAAAAGATGTTTACTAATTTGGAGGGCCTTCGGTGCTTTGGGCCCTTACAGAATTTACCTCTGGAGTTGTGTTGCTAGGAAATTTGGAGTTGACTTTGGAGTTGTCCTGTATCCAGGCTGACATCTAAAGCTAGAGGACTGACTTTACCTCAATGATGGTTGGATTGAGATGGAACTGCTGAAAATCTGAGCATCGATATCACCGGTTGGCTAGTGCCGGTTGGCTAGTGCCGGTTGGCTAGTGCCGGTTGGCTCTGGCAGCAGCATAAAATGGACCAAACCTTTTCAATAAACTTCAGCTCTTTTGTAGA
>XM_036936440.1
CGATTTAACTAATTTAGTCGAGTAATTCATTCATGAAATGTAGACGATTAATTTATCAATGCATTCGAATAACATCCGCCAGTTTCACAGCAAGGCGCAGCAGCCACAGACAATGAGTTAGTTATAAAATATCTTTGGCGCTGCTGAACCAGAGTCTTGGGTTTACAGGAGACGTTGAACATGGCGATTCTCCTTTAAGCGCATTCAACTTGCTATTCTCCAGCTTTTCAAGATTAATGTCATACGTTTGGTACTTACCAAAGAATTGAGTTTGGCTGAGCAACTAACGTTAGTATCGTAATGACTTTACTGCCGTTCCGGCCGGTATGTACTCCACCCCCCTAAAATCAAAATACAAAGTTACATGCAACCGAAAATGTATCGTATCGTTTTTGAGAAAATGCCAAATCCACCTCTTCTCTTCACCAAATACTACCACGCACAGTTTGGCTGATCCAGCAGCAGAAAAGGTCATTGATTTGATCACCTTTAACAATTTATGAACGCCATACCTATCTGTTGTTTCACCCGCGCTACACCGAACGCAATAATATTTCATATAATTCAGTTTTTGATTGAACTGCATTTGGAGGTTGACTCAATCAAGATGGACgaagagccagagagagccaaGCGTTGGGAGGGAGGTTATGAGCGAACATGGGAGATCTTGAAGGAGGACGAGTCTGGATCTCTCAAAGCCACTGTGGAGGAAATCCTTTTCCAGGCCAAAAGGAAAAGGGTGTTTGAGAGTCATGGACAAGTTCGTCTTGGGATGATGCGTCACCTGTACGTGGTAATTGACACCTCTAGAACCATGGAAGACCAGGACCTGAAACCCAACCGCCTCACCTCTACACTCAAgCTGGTGGAATATTTTGTTGAGGAATACTTTGACCAGAACCCCATCAGTCAGGTGGGCATCATCACCACAAAGAACAAGAGAGCGGAGAAGCTCACTGACCTGGCAGGGAACCCAAAGAAGCACATTGATGCCCTGAAGAAAGCAAAGGACTCTACGTGTGGAGGAGAACCCTCTCTATATAACTCCCTCAGCCTGGCCATGCAGACGCTCAAacACATGCCAGGCCACAGCAGCAGAGAAGTCCTCATCATCTTCAGTAGTCTCACCACATGTGACCCAGCTAACATCTATGAGCTGGTCAAGACTCTGAAGGCTCTGAAGATCCGTGTGTCTGTGATTGGCCTGTCAGCCGAGGTGCGTGTCTGCACGGTGCTCACCAGAGAGACCGGGGGGTCGTACCATGTGATCCTGGATGAGAGCCACTTCAGGGAGCTGCTGATGTTTCATGTGAAGCCTCCTCCTGCTACCTCCTCCTCCGAGTGTTCCCTCATACGCATGGGTTTCCCCCAGCACACCATAGCCTCTCTATCAGACCAGGATGCCAAGCCTTCTTTCAGCCAGGCCCATCTGGACAGCACTAGTGGTGGTCCCGGTCTGTCTATGGGAGGGTACTTCTGTCCACAGTGCCAGGCCAAGTACACTGAGCTACCTGTCGAGTGTAAAGTCTGTGGGCTGACACTTGTCTCCGCTCCTCATCTGGCTCGCTCCTTCCACCACCTCTTCCCCCTGGAGGCCTTCCAGGAGAGTCCTCTGCTGCTGCACCACACAGAGAGGTTCTGTGAAGCCTGCCAGGGGGAGCTGAAAGACAAGAGTGTGTTCACGTGTCCGTCGTGCAACAGTGTGTTCTGCGTGGAGTGTGACCTGTTCATCCACGACACGCTGCACTGCTGCCCCTCTTGCATCCACAGCCGCAGTGCCCCCTGAgatgctctggtcaaaaggagagGACTTTGTAGGACTTATGGGAAACCTCAGACAAGTGCCAATATACCTGCACACACTTTTTTAAAAGATGTTTACTAATTTGGAGGGCCTTCGGTGCTTTGGGCCCTTACAGAATTTACCTCTGGAGTTGTGTTGCTAGGAAATTTGGAGTTGACTTTGGAGTTGTCCTGTATCCAGGCTGACATCTAAAGCTAGAGGACTGACTTTACCTCAATGATGGTTGGATTGAGATGGAACTGCTGAAAATCTGAGCATCGATATCACCGGTTGGCTAGTGCCGGTTGGCTAGTGCCGGTTGGCTAGTGCCGGTTGGCTCTGGCAGCAGCATAAAATGGACCAAACCTTTTCAATAAACTTCAGCTCTTTTGTAGA
>XM_021622199.2
GCTTGAAAAGCCGATGAATGGTAAGTGGAATGACTGCTTCCTGGGTTTAAAGATAATTCAGTTTTTGATTGAACTGCATTTGGAGGTTGACTCAATCAAGATGGACgaagagccagagagagccaaGCGTTGGGAGGGAGGTTATGAGCGAACATGGGAGATCTTGAAGGAGGACGAGTCTGGATCTCTCAAAGCCACTGTGGAGGAAATCCTTTTCCAGGCCAAAAGGAAAAGGGTGTTTGAGAGTCATGGACAAGTTCGTCTTGGGATGATGCGTCACCTGTACGTGGTAATTGACACCTCTAGAACCATGGAAGACCAGGACCTGAAACCCAACCGCCTCACCTCTACACTCAAgCTGGTGGAATATTTTGTTGAGGAATACTTTGACCAGAACCCCATCAGTCAGGTGGGCATCATCACCACAAAGAACAAGAGAGCGGAGAAGCTCACTGACCTGGCAGGGAACCCAAAGAAGCACATTGATGCCCTGAAGAAAGCAAAGGACTCTACGTGTGGAGGAGAACCCTCTCTATATAACTCCCTCAGCCTGGCCATGCAGACGCTCAAacACATGCCAGGCCACAGCAGCAGAGAAGTCCTCATCATCTTCAGTAGTCTCACCACATGTGACCCAGCTAACATCTATGAGCTGGTCAAGACTCTGAAGGCTCTGAAGATCCGTGTGTCTGTGATTGGCCTGTCAGCCGAGGTGCGTGTCTGCACGGTGCTCACCAGAGAGACCGGGGGGTCGTACCATGTGATCCTGGATGAGAGCCACTTCAGGGAGCTGCTGATGTTTCATGTGAAGCCTCCTCCTGCTACCTCCTCCTCCGAGTGTTCCCTCATACGCATGGGTTTCCCCCAGCACACCATAGCCTCTCTATCAGACCAGGATGCCAAGCCTTCTTTCAGCCAGGCCCATCTGGACAGCACTAGTGGTGGTCCCGGTCTGTCTATGGGAGGGTACTTCTGTCCACAGTGCCAGGCCAAGTACACTGAGCTACCTGTCGAGTGTAAAGTCTGTGGGCTGACACTTGTCTCCGCTCCTCATCTGGCTCGCTCCTTCCACCACCTCTTCCCCCTGGAGGCCTTCCAGGAGAGTCCTCTGCTGCTGCACCACACAGAGAGGTTCTGTGAAGCCTGCCAGGGGGAGCTGAAAGACAAGAGTGTGTTCACGTGTCCGTCGTGCAACAGTGTGTTCTGCGTGGAGTGTGACCTGTTCATCCACGACACGCTGCACTGCTGCCCCTCTTGCATCCACAGCCGCAGTGCCCCCTGAgatgctctggtcaaaaggagagGACTTTGTAGGACTTATGGGAAACCTCAGACAAGTGCCAATATACCTGCACACACTTTTTTAAAAGATGTTTACTAATTTGGAGGGCCTTCGGTGCTTTGGGCCCTTACAGAATTTACCTCTGGAGTTGTGTTGCTAGGAAATTTGGAGTTGACTTTGGAGTTGTCCTGTATCCAGGCTGACATCTAAAGCTAGAGGACTGACTTTACCTCAATGATGGTTGGATTGAGATGGAACTGCTGAAAATCTGAGCATCGATATCACCGGTTGGCTAGTGCCGGTTGGCTAGTGCCGGTTGGCTAGTGCCGGTTGGCTCTGGCAGCAGCATAAAATGGACCAAACCTTTTCAATAAACTTCAGCTCTTTTGTAGA

Function

NR:

description
general transcription factor IIH subunit 2-like protein isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03142 TFIIH2, GTF2H2, SSL1; transcription initiation factor TFIIH subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622200.2 False 1714 mRNA 0.51 11 77695841 77700928
XM_036936440.1 False 2182 mRNA 0.49 11 77696014 77700928
XM_021622199.2 True 1675 mRNA 0.51 11 77696806 77700928
Loading

Neighbor

gene id symbol gene type direction distance location
oclnb ocln coding upstream 3541 77676100 ~ 77692300 (+)
marveld2b marveld2 coding upstream 21208 77665464 ~ 77674633 (+)
ak6 ak6 coding upstream 31315 77642051 ~ 77664526 (+)
ankrd34bb LOC106570875 coding upstream 97418 77577371 ~ 77598423 (+)
dhfr dhfr coding upstream 121422 77562372 ~ 77574419 (+)
naaladl1 naaladl1 coding downstream 25513 77726441 ~ 77747121 (+)
LOC110536437 LOC106570851 coding downstream 329345 78030273 ~ 78156587 (+)
LOC110536435 LOC106570854 coding downstream 466848 78167776 ~ 78231302 (+)
LOC118937410 NA coding downstream 586729 78287657 ~ 78289558 (+)
LOC110535128 LOC106570858 coding downstream 645431 78346359 ~ 78398986 (+)
G1019965 NA non-coding upstream 42129 77651252 ~ 77653712 (+)
G1019804 fam151b non-coding upstream 87536 77605155 ~ 77618204 (+)
G1019806 NA non-coding upstream 91009 77603480 ~ 77604832 (+)
G1019772 NA non-coding upstream 182462 77509883 ~ 77513379 (+)
G1019992 NA non-coding downstream 12387 77713315 ~ 77714640 (+)
G1019994 NA non-coding downstream 13720 77714648 ~ 77715039 (+)
G1019991 LOC106570844 non-coding downstream 23385 77724313 ~ 77725346 (+)
G1020006 NA non-coding downstream 54540 77755468 ~ 77755725 (+)
G1020008 NA non-coding downstream 57761 77758689 ~ 77759035 (+)
G1019753 NA other upstream 225916 77468229 ~ 77469925 (+)
LOC110536420 NA other upstream 285314 77407991 ~ 77410527 (+)
LOC110536414 NA other upstream 561265 77131426 ~ 77139724 (+)
mamdc2a LOC106570826 other upstream 785462 76889699 ~ 76939449 (+)
G1019999 NA other downstream 24607 77725535 ~ 77726062 (+)
G1020031 NA other downstream 95821 77796749 ~ 77802459 (+)
G1020098 NA other downstream 220359 77921287 ~ 77922886 (+)
LOC110536452 ube2l3 other downstream 872878 78573708 ~ 78578350 (+)
G1020867 NA other downstream 965156 78666084 ~ 78666478 (+)

Expression

gtf2h2(LOC100196672) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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gtf2h2(LOC100196672) Expression in each Bioproject

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gtf2h2(LOC100196672) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network