LOC110535124 (LOC106570849)


Basic Information

Item Value
gene id LOC110535124
gene name LOC106570849
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 77759929 ~ 77778022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936443.1
TGTATCCTCCTGCATCATGGTGGATCACAGAGACTCAGATGGGGGCCTGTCGCCTAGATCCCCCCCACCTGCACCCCTCTCTCCGGGCCACACCCCCGCCCGACGCCCTGCCCAGCACAATCACGACAGGCCCGTCCCGGACCTGTGGGCCCCGCTGTCGCCCAAACCATCCCCCATGGTCGAGCCCCACAGCCCTCCTGGCTCCCGCAGCCCCTTTCCCAGCATAGAGTCTCCTCCTGGGGGCAACGCGTCAGCCTGCTCCTTGGGCAATCCTGGAGGGTCTGGGGAGGGCTGCAGTAGTGGCTCCTCATTGGGACAGAATCAGCCCAACTGCTGCACTGACGGCCCCCGTGGGGCCCTTGGGGCATTCGACACCCGTAGCCCTCCTGGAGGACCTCCCCTCGGACCTCCAGGCTCCCTCTCCCACCGCTTCCCTCCCGCCACAGACCCCCAGGAGCCTGGGGAGGGTAGGGAGTGGGGGGCCAAGCTGGAGTCCTCACCGCCCCATCCCAGTGCCGCCGCCTTCAACTCCACCAACGGCCTGAGCTCCGTGGAGAAGACCCCCAGCACCAGCGGCCTGAGCTCCGTGGAGAAGACCCCCAGCGCCAGCGGCCTGAGCTCCGTGGAGAAGACCCCCAGCGCCAGCGGCCTGAGCTCCGTGGAGAAGACCCCCAGCACCAGCGGCCTCCGTGGGATCTCTTCGGGTCCCTGCCCGGCCAAGAAGAAACTGCTATCATCCAGCGACACGGGAGAGTCGTGTTCGGAGGACGAGGGCCCCTCCACCTCTAAGAGGAGCCGTCTGGCCCCGGGGTTAGGGCTGGCCTCCTGCAGGGGCACCGATGCCAAGGCTGCCCCCTTCTGGAACCACCTGCTTCCCAACGCACGGGACCCAAACCACACCAAGAGTTTATCAGAATGCAGAGGAGCCAGCAGGAGGCTGAAAAGTGGGATGCGCCTGAAAAGtcgACAGCTATGTGGGCGGCGTACAGACACCTTGGGTCGCACTGCTCGGTCAGGCTGGCCCTCTTCTTCCATCAGCCGTTCACTACTGGGTAACTTTGAgGAGTCGATCCTGAAGGGTCGTTTCTCTCCGTCGGGTCGTATCGAGGGCTTCACAGCAGAGATCGGTGCCAGCGGATCCTACTGCCCTCAACACGCCACTCTGCCTGTACACGTCACCTACTACGACATCTCAGAGCACAGCGCACCCTCACCCTTcctgGGGGTGATCTCCTTGGAGCCTTTAGGAAAGAAGGGATACAGCGTACCCAAAGCAGGGACCACCCAAGTGACCTTATTCAACCCCAATAAAACTGTGGTGAAGATGTTCCTCGTGACCTATAACTTTGGGGACATGCCCGTCAATCACATGACCTTCCTTCGTCACCGCATCTTCCTGGTTCCCGTTGAGGAACCAGAGGCGAAGGGGGGTGAGCCTCCAGAGCCCAGGGCCACGCccacagagaggaggaagattCTCTGCTACCTGATACACCTCAGATTCCAGAGCTCTAAATCTGGGAAGATCTACTTGCACAACGATATCCGGCTGCTATTCTCCCGCAAGTCCATCGAGGTGGACACGGGGATCCCTTACGAGCTCAAATCTTTCACCGAGGTGCCAAGAAACCCCAAATACTCCCCCCGCGTGTGAGCCTACGATGAACCCGCGACCCCTGACCCCATCACAAACGCAGCCCATTCCTGGAACTGGGcacagagagataaacagacagacatggaCAAGAAAAGTTGAAAATATTATTCATTCAGACACACGCATatatactgagtatacaaaacattaaggacaccttccctaatattgagttgcactccctctattgccctcagaacagcctcggttcatcagggcatggactctacaaggtgatgaaagcgttccacagggatgctggaccgtgttgactc

Function

NR:

description
protein FAM214B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936443.1 True 1932 mRNA 0.60 7 77759929 77778022

Neighbor

gene id symbol gene type direction distance location
erap1b LOC106570844 coding downstream 34008 77700933 ~ 77725921 (-)
rad17 rad17 coding downstream 100066 77645962 ~ 77659863 (-)
ccdc125 ccdc125 coding downstream 115125 77619098 ~ 77644804 (-)
fam151b fam151b coding downstream 141670 77605168 ~ 77618259 (-)
LOC118937407 LOC106570835 coding downstream 228045 77529680 ~ 77531884 (-)
LOC118936501 LOC106570849 coding upstream 39 77778061 ~ 77821554 (-)
LOC110536447 LOC106570860 coding upstream 636771 78414793 ~ 78433486 (-)
LOC110536449 LOC106570861 coding upstream 690511 78468533 ~ 78476320 (-)
LOC110536450 LOC106570886 coding upstream 707094 78485116 ~ 78487202 (-)
cnot6l cnot6l coding upstream 996543 78774565 ~ 78797212 (-)
G1020275 NA non-coding downstream 812 77758326 ~ 77759117 (-)
G1020299 NA non-coding downstream 6812 77752832 ~ 77753117 (-)
G1020298 NA non-coding downstream 7507 77752205 ~ 77752422 (-)
G1020297 NA non-coding downstream 10271 77749377 ~ 77749658 (-)
G1020296 NA non-coding downstream 11197 77748426 ~ 77748732 (-)
G1020307 NA non-coding upstream 4015 77782037 ~ 77782697 (-)
G1020317 NA non-coding upstream 52113 77830135 ~ 77830389 (-)
G1020319 NA non-coding upstream 55344 77833366 ~ 77833635 (-)
G1020338 NA non-coding upstream 108443 77886465 ~ 77887531 (-)
G1019926 NA other downstream 183265 77575871 ~ 77576664 (-)
G1019413 NA other downstream 803112 76955366 ~ 76956817 (-)
G1019056 NA other downstream 1214188 76545108 ~ 76545741 (-)
ckap2l LOC106570813 other downstream 1513042 76202025 ~ 76246958 (-)
G1021084 NA other upstream 775606 78553628 ~ 78566847 (-)
G1021129 NA other upstream 855599 78633621 ~ 78634401 (-)
G1021664 NA other upstream 1644488 79422510 ~ 79423479 (-)
G1021853 NA other upstream 1927197 79705219 ~ 79705722 (-)

Expression


Co-expression Network