LOC118936501 (LOC106570849)


Basic Information

Item Value
gene id LOC118936501
gene name LOC106570849
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 77778061 ~ 77821554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034746.1
ACCTGTTTAAAGGGACACTGCGCTATTTCATGGGCGAGGGCGAAAACAGCTAAAGCGCAGAAAAGCAGATAAATGCAAAATAGCCAGCAAGCAACCGAGCTAGCAAGCTATgtggtcagagaggagaggagagacgacaAGACGAGACGGACAAATTCCATGATCAACGATGCAATCAACTTCTCTTCGAAGATAGCTAACGTTGGTTTTGATGGCAATCCGATTGATCTTTAAATGTGAAAAGAGACACTTCATGTGAAATCGGACAGGGCTGTCCTGAAGCAAAGGTAAAAAGCAAAAAGTTAAACTCCGCTCCTGAGATGGAGGAAATGTCTCGTTAATTAACCCTTTACGTGTGAAGCCTGTCGCCCCCTTCATGTAGCTTGGTAGTTACTGCTCTGGTTGAGGAGGccaagagaggaagaaagagcaaAAGAAagcgaagagagagggagagatataacgAAGGCAAGCTGACCGGCTAGACTCTCTGAAAGGCAGAGAGACACCAGTCACCAGAGGTGCTCGCCCCAAAAACAAAAAGGAGAAGTGGAAAAACAAAGGCagaggaaaagaaagagaagccttggctgtgtctctgtgaggggtTTCTCTGTGGAATGCCCGTGTCATGATGCCGTCGCTGAGACTCACCCTGCGTCCAGGTGACCAGGGAGGGCGTGTCGAGTCGTCAGCCAATCACAGCAGGTGCTTTAGGAGAGTCAGTTCCTGTTTATGTTCATCAGTACTTCCTCTCAGAACCCTCCCGCCTCACTGATGTCCTGCCCCCTCGgcggTAGGTAGGTAGTTCCTGTATCCATCTCTTCCatcacttcctcttcctccttacTGTCTGGCTGTGTGGGGATGCTGGTGCTAGCTGGCACTGTTCGTAACTATGGTGATAGTCAGGTAACCGTGGCAAGAGGAGTCTGTGGGCACAGCTTCCTGATGTTGTGCCAGGTGCTGAGGGGACAGGAGGGCACCATCGAACGAACGGGCACAGAGGTGCTGTGCAACTCTGCTTCCTAGTTTACACTGATGACATCACAACAGGAAGCATAGGACCTATCTTACTGTAGAACGTCAATCTCCGCCTCCTTGCACTTTCTAGAACTTCCTGTTGCTGCTACTTGACTTCCTGTTGCACAAAGTCTCTCAGACACTCTTAAGACCTCTAACCTCTGAACCCAAGCAGCCATGAGGCACATTCACGTAGAACTGACACGCGGCAGCAAGGAGGAGATGGCTCCTGTGGAGCTTCCATCCCAGGATGGGGACCTGCCTCCTCCCACGGCCCCCTCACAGGTCCCCGACCTTGGGGTGATGAGACCGGGGTTGGTGGTTCCCAAGCCCTTTGGTCATGAGCAGCTGCGTCTCCAGAAGGTCTATCagctctccatcttctcccagcTGGGGGGGTTCTCAGCCTCCGAGCTCCCCAGAACCAGTGAGGCCCAGCCGGGGCAAGTCCAGCCGGGTCAGGTCCAGCGGACTGACAGGGTGGGGGTCAAGAGAGGACAGGGTGGGGTTCAAGAGGATTCCCATCTAACACACAAATGGCCCCACCTGGCTGGGGACCTCGACAGggaaagggatggaggggtgCTGTCAGGGTCAGGACCTGGGGTAGGGGTGGATGTCGGA
>XR_005034747.1
ACCTGTTTAAAGGGACACTGCGCTATTTCATGGGCGAGGGCGAAAACAGCTAAAGCGCAGAAAAGCAGATAAATGCAAAATAGCCAGCAAGCAACCGAGCTAGCAAGCTATgtggtcagagaggagaggagagacgacaAGACGAGACGGACAAATTCCATGATCAACGATGCAATCAACTTCTCTTCGAAGATAGCTAACGTTGGTTTTGATGGCAATCCGATTGATCTTTAAATGTGAAAAGAGACACTTCATGTGAAATCGGACAGGGCTGTCCTGAAGCAAAGGTAAAAAGCAAAAAGTTAAACTCCGCTCCTGAGATGGAGGAAATGTCTCGTTAATTAACCCTTTACGTGTGAAGCCTGTCGCCCCCTTCATGTAGCTTGGTAGTTACTGCTCTGggtTTCTCTGTGGAATGCCCGTGTCATGATGCCGTCGCTGAGACTCACCCTGCGTCCAGGTGACCAGGGAGGGCGTGTCGAGTCGTCAGCCAATCACAGCAGGTGCTTTAGGAGAGTCAGTTCCTGTTTATGTTCATCAGTACTTCCTCTCAGAACCCTCCCGCCTCACTGATGTCCTGCCCCCTCGgcggTAGGTAGGTAGTTCCTGTATCCATCTCTTCCatcacttcctcttcctccttacTGTCTGGCTGTGTGGGGATGCTGGTGCTAGCTGGCACTGTTCGTAACTATGGTGATAGTCAGGTAACCGTGGCAAGAGGAGTCTGTGGGCACAGCTTCCTGATGTTGTGCCAGGTGCTGAGGGGACAGGAGGGCACCATCGAACGAACGGGCACAGAGGTGCTGTGCAACTCTGCTTCCTAGTTTACACTGATGACATCACAACAGGAAGCATAGGACCTATCTTACTGTAGAACGTCAATCTCCGCCTCCTTGCACTTTCTAGAACTTCCTGTTGCTGCTACTTGACTTCCTGTTGCACAAAGTCTCTCAGACACTCTTAAGACCTCTAACCTCTGAACCCAAGCAGCCATGAGGCACATTCACGTAGAACTGACACGCGGCAGCAAGGAGGAGATGGCTCCTGTGGAGCTTCCATCCCAGGATGGGGACCTGCCTCCTCCCACGGCCCCCTCACAGGTCCCCGACCTTGGGGTGATGAGACCGGGGTTGGTGGTTCCCAAGCCCTTTGGTCATGAGCAGCTGCGTCTCCAGAAGGTCTATCagctctccatcttctcccagcTGGGGGGGTTCTCAGCCTCCGAGCTCCCCAGAACCAGTGAGGCCCAGCCGGGGCAAGTCCAGCCGGGTCAGGTCCAGCGGACTGACAGGGTGGGGGTCAAGAGAGGACAGGGTGGGGTTCAAGAGGATTCCCATCTAACACACAAATGGCCCCACCTGGCTGGGGACCTCGACAGggaaagggatggaggggtgCTGTCAGGGTCAGGACCTGGGGTAGGGGTGGATGTCGGA
>TU1160623
CAGGACGGGAGGGGAGTAGAAAGAGCCACTTAACCACAGCACTAGAACAGCCTGATGAGCACTGGACTTGGGAACAACGTTTCTCTCTTAAAACCCTATTCAGGTTGAGGAGGccaagagaggaagaaagagcaaAAGAAagcgaagagagagggagagatataacgAAGGCAAGCTGACCGGCTAGACTCTCTGAAAGGCAGAGAGACACCAGTCACCAGAGGTGCTCGCCCCAAAAACAAAAAGGAGAAGTGGAAAAACAAAGGCagaggaaaagaaagagaagccttggctgtgtctctgtgaggggtTTCTCTGTGGAATGCCCGTGTCATGATGCCGTCGCTGAGACTCACCCTGCGTCCAGGTGACCAGGGAGGGCGTGTCGAGTCGTCAGCCAATCACAGCAGGTGCTTTAGGAGAGTCAGTTCCTGTTTATGTTCATCAGTACTTCCTCTCAGAACCCTCCCGCCTCACTGATGTCCTGCCCCCTCGgcggTAGGTAGGTAGTTCCTGTATCCATCTCTTCCatcacttcctcttcctccttacTGTCTGGCTGTGTGGGGATGCTGGTGCTAGCTGGCACTGTTCGTAACTATGGTGATAGTCAGGTAACCGTGGCAAGAGGAGTCTGTGGGCACAGCTTCCTGATGTTGTGCCAGGTGCTGAGGGGACAGGAGGGCACCATCGAACGAACGGGCACAGAGGTGCTGTGCAACTCTGCTTCCTAGTTTACACTGATGACATCACAACAGGAAGCATAGGACCTATCTTACTGTAGAACGTCAATCTCCGCCTCCTTGCACTTTCTAGAACTTCCTGTTGCTGCTACTTGACTTCCTGTTGCACAAAGTCTCTCAGACACTCTTAAGACCTCTAACCTCTGAACCCAAGCAGCCATGAGGCACATTCACGTAGAACTGACACGCGGCAGCAAGGAGGAGATGGCTCCTGTGGAGCTTCCATCCCAGGATGGGGACCTGCCTCCTCCCACGGCCCCC
>TU1160624
GCTAACGTTGGTTTTGATGGCAATCCGATTGATCTTTAAATGTGAAAAGAGACACTTCATGTGAAATCGGACAGGGCTGTCCTGAAGCAAAGGTAAAAAGCAAAAAGTTAAACTCCGCTCCTGAGATGGAGGAAATGTCTCGTTAATTAACCCTTTACGTGTGAAGCCTGTCGCCCCCTTCATGTAGCTTGGTAGTTACTGCTCTGGTGAGTAACAAAGCTTTTTCATGGTCACTGAATTATGTTCTGTAAACTAGCTAACGGCTGATTAACTGCTTACATTTAGGATTTCTCTTGTAAAAACACGGTGTCAATACTATTGTACTATTGTAAGGACGTTATAACAACTAAATGTGTATTTCGGGGTTTTAAATGTGGACAGTGGTCTTTGTGGAAAAACATACAAATGATGCAAGACCTCAATCTTATTTAGGCAGCTGGCTACATGGTAGTTTAGAGTGTTGTCGTATTGAATGATTTTCTTGGGCATTTGAAATTCAGCCTAGCCCAGATGACATagtcatgacacacacacataagtaaACTACTGTGTGTCTTCGCAGGGGGCGTTCCTCTGCTTTGTTTGCCATCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034746.1 False 1647 mRNA 0.53 5 77778061 77821554
XR_005034747.1 False 1442 mRNA 0.54 4 77778061 77821554
TU1160623 False 1004 lncRNA 0.53 4 77778406 77794230
TU1160624 True 592 lncRNA 0.40 1 77820768 77821359

Neighbor

gene id symbol gene type direction distance location
LOC110535124 LOC106570849 coding downstream 39 77759929 ~ 77778022 (-)
erap1b LOC106570844 coding downstream 52140 77700933 ~ 77725921 (-)
rad17 rad17 coding downstream 118198 77645962 ~ 77659863 (-)
ccdc125 ccdc125 coding downstream 133257 77619098 ~ 77644804 (-)
fam151b fam151b coding downstream 159802 77605168 ~ 77618259 (-)
LOC110536447 LOC106570860 coding upstream 593239 78414793 ~ 78433486 (-)
LOC110536449 LOC106570861 coding upstream 646979 78468533 ~ 78476320 (-)
LOC110536450 LOC106570886 coding upstream 663562 78485116 ~ 78487202 (-)
cnot6l cnot6l coding upstream 953011 78774565 ~ 78797212 (-)
LOC110536655 LOC106570895 coding upstream 1373319 79194873 ~ 79224499 (-)
G1020275 NA non-coding downstream 18944 77758326 ~ 77759117 (-)
G1020299 NA non-coding downstream 24944 77752832 ~ 77753117 (-)
G1020298 NA non-coding downstream 25639 77752205 ~ 77752422 (-)
G1020297 NA non-coding downstream 28403 77749377 ~ 77749658 (-)
G1020296 NA non-coding downstream 29329 77748426 ~ 77748732 (-)
G1020317 NA non-coding upstream 8581 77830135 ~ 77830389 (-)
G1020319 NA non-coding upstream 11812 77833366 ~ 77833635 (-)
G1020338 NA non-coding upstream 64911 77886465 ~ 77887531 (-)
G1020340 NA non-coding upstream 69070 77890624 ~ 77891046 (-)
G1020370 NA non-coding upstream 115685 77937239 ~ 77939273 (-)
G1019926 NA other downstream 201397 77575871 ~ 77576664 (-)
G1019413 NA other downstream 821244 76955366 ~ 76956817 (-)
G1019056 NA other downstream 1232320 76545108 ~ 76545741 (-)
ckap2l LOC106570813 other downstream 1531174 76202025 ~ 76246958 (-)
G1021084 NA other upstream 732074 78553628 ~ 78566847 (-)
G1021129 NA other upstream 812067 78633621 ~ 78634401 (-)
G1021664 NA other upstream 1600956 79422510 ~ 79423479 (-)
G1021853 NA other upstream 1883665 79705219 ~ 79705722 (-)

Expression


Co-expression Network