LOC110536447 (LOC106570860)


Basic Information

Item Value
gene id LOC110536447
gene name LOC106570860
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 78414793 ~ 78433486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622213.2
CAAAGAGGCAGACGTCTACCAGATGAACCCCCCTAAGTACAACAAGATTGAGGACATGGCCATGATGACCTACCTGAATGAAGCCTCTGTGTTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTATACCTACTCTGGGCTCTTCTGTGCCACGGTGAACCCCTACAAGTGGCTTCCTGTGTACGACATGGAGGTTGTCAACGCCtacagagggaagaagaggatggAGGCTCCACCCCATATCTTCTCCGTCTCTGACAACGCCTTTCAGTTCATGCAGATTGATAACGAAAACCAGTCTGTCCTGATCACTGGAGAATCCGGTGCAGGAAAGACTGTCAACACCAAGCGTGTGATCCAGTACTTTGCCACCATTGCAGTGTCTGGTGCCAAGAAGGAAGTAGACCCCAACAAAATGCAGGGGTCTCTTGAGGATCAGATCATTGCAGCTAACCCTCTGCTGGAGGCTTACGGTAATGCCAAGACAGTGAGGAACGACAACTCGTCTCGCTTCGGTAAATTCATCAGGATTCACTTCCAAGGAGGAAAACTGGCTAAGGCTGACATTGAGACCTACCTCCTGGAGAAGTCCCGAGTGTCCTTCCAGCTGCCCGATGAAAGAGGCTACCACATCTTCTTCCAGATGATGACCAATCACAAACCTGAGATAGTTGAAATGTCGCTCATCACCACCAACCCCTACGACTTCCCCATGTGCAGTCAGGGTCAGATCACGGTGGCCAGCATCAACGACAAGGAAGAGCTGGATGCCACAGACGATGCCATTACAATCCTGGGCTTCACTAATGAGGAGAAGATGGGCATCTACAAGCTGACTGGAGCTGTGCTGCACCATGGAAACTTGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCCGAGCCAGACGGCACAGAGGTGGCTGATAAAATCGGCTACCTGCTGGGCCTGAACTCAGCTGAGATGTTGAAGGCTTTGTGCTACCCCAGAGTGAAGGTCGGCAACGAGTACGTGACCAAGGGACAGACTGTGCCTCAGGTTAATAACTCAGTCTCGGCTCTGGCCAAGTCCATCTACGAGAGGATGTTCTTGTGGATGGTCATCCGTATCAACGAGATGTTGGACACCAAGAATCCAAGGCAGTTCTATATCGGCGTGCTGGATATTGCCGGGTTTGAGATCTTTGATTACAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCCTGGAACAAGAGGAGTACAAGAAGGAGGGAATCATCTGGGCTTTCATTGACTTTGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGTCTTCAGACACTACCTTCAAGGACAAGCTGTACGCCCAGCATCTTGGCAAAACCAAGGCGTTTGAGAAGCCCAAGCCTGCCAAAGGCAAGGCAGAGGCTCACTTCTCCCTGGTGCACTATGCCGGCACTGTGGACTACAACATCACTGGCTGGCTGGAGAAGAACAAGGACCCCCTGAACGACTCAGTTATTCAGCTGTACGGGAAGTCCACAGTCAAACTTTTGGCTGCTCTGTACCCTGCTGCCCCACCGGAGGATACAACCAAGAAGGGAGGTAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCGTCCCAGTTCAGGGAGAACTTACATAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTGCGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTCCTGGTTATTCACCAGCTCAGGTGTAATGGTGTTCTCGAGGGAATTCGGATCTGCAGAAAGGGCTTCCCCAGCAGAATCATCTATGCTGACTTCAagcagagGTACAAAGTACTGAATGCCAGCGTCATCCCCGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGgtccattgatgtgaatcacgaggattacaagtttggacacaccaagGTGTTCTTCAAAGCCGGTCTGCTGGGCGTcttggaggagatgagagatgagaagcTGGCCTCTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTGATGAGGAGAGAGTTCACcaagatgatggagaggagAGATTCCGTCTTCACCATCCAGTACAACATCCGTTCATTCATGAATGTGAAAACCTGGCCGTGGATGAAGGTGTACTTCAAGATCAAGCCCCTGCTGAAGAGTGCGGAGACGGAGAAGGAGCTGGCCAACATGAAGGAGAACTATGAGAAGATGACGTCGGACCTGGCCAAGGCTCTGGCCACCAAGAAGCAGTTGGAGGAGAAGATGATCTCCATGGTGCAGGAGAGAGCAGACCTGGCGCTCCAAGTAGCATCTGATTCAGAGAATCTGACTGATGCTGAGGAAAGGTGCGAGGGGCTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACCGAGaggctggaggatgaggaggagatgaaTGCTGAGTTGACTGCCAAGAAGAGGAAGCTGGAGGATGagtgctctgagctgaagaaggaCATTGATGACCTGGAGCTCACCCTGGCCAAAGTGGAGAAGGAGAAGCACGCCAGTGAAAACAAGGTTAAAAACCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGACgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGGCCAAGACCAAGCTGGAACAGCAAGTGGATGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAGCTCCGTATGGACCTTGAGAGAGCCAAGAGAAAGCTGGAGGGAGATCTGAAACTGGCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAGTCTGATGAGAAAATCAAGAAGAAGGAGTTTGAGACCAGCCAGCTCCTCAGCAAGATAGAGGATGAACAGTCTCTGGGAGCTCAGCTGCAGAAGAAGATCAAGGAActgcagGCCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCCAAGGTTGAGAAGCAGAGGGCCGATCTCTCCAGGGAACTTGAGGAGATCAGTGAGAGGCTGGAGGAGGCCGGAGGCGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGTGAGGTTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGGCCACAGCCGCCGGTCTGCGCAAGAAGCAGGCTGACAGTGTGGCTGAGCTCGGGCAGCAGATCGACAACCTGCAGCGCATCAAGCagaagctggagaaggagaagagcgaGTATAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCCGTCGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGTCGTACTCTTGAGGACCAGCTGAGCGAGCTCAAGACTAAGAATGATGAGAATGTTCGCCAGGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGCCgccagctggaggagaaggaaGCCCTGGTCTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCAGCAGGTTGAGGAGATGAAGAGGCTGATTGAGGAGGAGGTCAAGGCTAAAAACGCACTGTCCCACAGTGTCCAGTCTGCCCGCCATGACTGTGACCTTCTAAGAGAGCAGtttgaggaggagcaggaggccaAGGCAGAGCTGCAACGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCTATCCAACGcacagaggagctggaggaggccaAGAAGAAGTTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCCAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGActgcagggagaggtggaggacctCATGATTGACGTTGAGAGAGCCAACGCGATGGCCGCCAACCTCGACAAGAAGCAGAGGAACTTTGACAAGGTTCTGGCAGAGTGTAAGCAGAAGTTTGAGGAAGGTCAGGCTGAGCTGGAAGGAGCTCAGAAGGAGGCTCGCTCTATGAGCACTGAACTCTTCAAGATGAAGAACTCCTACGAGGAGGCTCTGGATCATCTGGAGActctgaagagagagaacaagaacctGCAACAGGAGATCTCTGACCTGACTGAGCAGATTGGAGAGACTGGCAAGAGCATCCATGAGCTGGAGAAGGCCAAGAAGACCGTGGAGACAGAGAAGTCTGAGATCCAGACCGCTCTGGAGGAGGCTGAGGGAACACTGGAGCACGAGGAATCCAAGATTCTGCGTTTGCAGCTGGAGCTGAACCAGATCAAGGGCGAGGTGGACAGGAAGATCGCTGAGAAGGACGAGGAGATGGAGCAGATCAAGAGGAACAGCCAGAGGATGGTTGACTCCATGCAGAGCACCCTGGACTCGGAGGTCAGGAGCAGGAATGACGCCCTGAGggtgaagaagaagatggagggagacctGAACGAGATGGAAGTCCAGCTGAGCCACGCCAACAGGCAGGCCGCTGAGTCCCAGAAACAGCTGAGGAACGCCCAGGGACAGCTCAAGGATGCCCAATTGCACCTTGATGACGCCGTCCGTGCCTCAGAGGACATGAAGGAGCAGGCAGCCATGGTGGAGCGCAGAAACGGTCTGATGGTGGCTGAGATCGAGGAGCTGAGAGTTGCtctggagcagacagagagaggccgcAAAGTGGCTGAGACTGAGCTGGTAGACGCCAGCGAGCGTGTTGGACTTCTGCACTCCCAGAACACCAGCCTTCTGAACACTAAGAAGAAGCTGGAGACTGACCTAGTGCAGGTGCAGGGAGAGGTGGACGACATCGTCCAGGAGGCCAGGAACGCAGAGGAGAAGGCCAAGAAGGCCATCACTGACGCGGCCATGATGGCtgaggagctgaagaaggagcaggacaccagctctcacctggagaggatgaagaagaacctGGAGGTCACAGTCAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGAATCTGGCCATGAAGGGCGGCAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTGCGTGAGCTCGAGACTGAGGTGGAGGCTGAGCAGAGAAGAGGTGTAGACGTGGTCAAGGGAGTCCGCAAGTATGAGCGCAGAGTCAAGGAGCTCACCTACCAGACTGAGGAGGATAAGAAGAACGTTGGCAGACTTCAGGACCTGGTAGGCAAGCTGCAGATGAAAGTGAAGGCCTACAAGAGGCAGGCCGAGGAAGCGGAGGAAGCAGCCAATAGCCACATGTCTAAGCTCCGGAAGGTTCAGCATGAGCTGGAGGAGGCTGAGGAGCGTGCTGACATTGCTGAGACTCAGGTCAACAAGCTCAGAGCCAAGACCCGCGAAGGTGGAAAGGGCAAGGAAGCTGCTGAATAAACCAAAGTATTGAAG

Function

NR:

description
myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622213.2 True 5599 mRNA 0.54 38 78414793 78433486

Neighbor

gene id symbol gene type direction distance location
LOC118936501 LOC106570849 coding downstream 593239 77778061 ~ 77821554 (-)
LOC110535124 LOC106570849 coding downstream 636771 77759929 ~ 77778022 (-)
erap1b LOC106570844 coding downstream 688872 77700933 ~ 77725921 (-)
rad17 rad17 coding downstream 754930 77645962 ~ 77659863 (-)
ccdc125 ccdc125 coding downstream 769989 77619098 ~ 77644804 (-)
LOC110536449 LOC106570861 coding upstream 35047 78468533 ~ 78476320 (-)
LOC110536450 LOC106570886 coding upstream 51630 78485116 ~ 78487202 (-)
cnot6l cnot6l coding upstream 341079 78774565 ~ 78797212 (-)
LOC110536655 LOC106570895 coding upstream 761387 79194873 ~ 79224499 (-)
LOC110535130 LOC106570891 coding upstream 825825 79259311 ~ 79265496 (-)
G1020767 NA non-coding downstream 10740 78403285 ~ 78404053 (-)
G1020763 NA non-coding downstream 23444 78389240 ~ 78391349 (-)
G1020719 NA non-coding downstream 75783 78322958 ~ 78339010 (-)
G1020720 NA non-coding downstream 76440 78327368 ~ 78338353 (-)
G1020727 NA non-coding downstream 77972 78328393 ~ 78336821 (-)
G1020789 NA non-coding upstream 20102 78453588 ~ 78455868 (-)
G1020790 NA non-coding upstream 23657 78457143 ~ 78458484 (-)
G1020796 NA non-coding upstream 46619 78480105 ~ 78480631 (-)
G1020813 NA non-coding upstream 76664 78510150 ~ 78510530 (-)
G1021075 NA non-coding upstream 84554 78518040 ~ 78518259 (-)
G1019926 NA other downstream 838129 77575871 ~ 77576664 (-)
G1019413 NA other downstream 1457976 76955366 ~ 76956817 (-)
G1019056 NA other downstream 1869052 76545108 ~ 76545741 (-)
ckap2l LOC106570813 other downstream 2167906 76202025 ~ 76246958 (-)
G1021084 NA other upstream 120142 78553628 ~ 78566847 (-)
G1021129 NA other upstream 200135 78633621 ~ 78634401 (-)
G1021664 NA other upstream 989024 79422510 ~ 79423479 (-)
G1021853 NA other upstream 1271733 79705219 ~ 79705722 (-)

Expression


Co-expression Network