LOC110536450 (LOC106570886)


Basic Information

Item Value
gene id LOC110536450
gene name LOC106570886
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 78485116 ~ 78487202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622215.2
TGGCAGCGTCCTCACTCTCTCTGAGCTTCACACACCTGAACGACCTGCCTGAAACACAGCACAATCAGCAGCATCACCTGGCAgcgtcctcactctctctctcagcttcaCACACCTGAACGACCTGCCTGAAACACAGCACAATCAGCAGCAACATGACATCTCAAGTGGCAGCACTTCTCTTCGTCGCGACAGTGTGCTTGGGCTATGCATCAGCATTCTCTGAGGTACCCGTGGATTGCTGTCTCCTCACCACTGAGACACGTTTCCCTCGCCACTTCAAGATGGTCTCCTACCTCCTGCAGACCACAGAGAAAGGCTGTGACATCGATGCCACTGTGTTCATCACTAAGACAGGGGTGAGATTGTGCACGCCCCATCCCACAAAGAGCAAGTGGGTGGCAGACTACATCAAACGTCTGGAGCGAACCATCTCCCTCTGAATAGCTGATACACCTCAGCAGTAAATGAGGATGAAAACAGCAGATTGAGACCAGAagaggaatgaaggagaggagtggagaagaggaatggaggatgTTATTTGATGGGGACAACTGAAGACGATACACAATTGTCCTGTCTTCAGCCACATTCATTTCaacctttttttttaaccagATACTGTAGTAGACTATTCGTCAGCAGTACATGATGTAAATGCATAGAACAGGAAGAAAATACATCAAACTGGATTTAAAAATTGGATATTCATGTAGTAAAATGTGTTTATATGGTTCGGTGGTTTTTGATTGTGATGAGTAACTGAAATATGGACCACACAACTGATAAGATTTTCCCAATGCCTGATGTGTATATCCACATTTGTTTTTGGTGCTACTGACGTTTTAAaactattattttttttaactctgtCTGTGAATAAAAGTACAAATTACTATTTCAATAAAagatgaagtaaaaaaaaaactttt
>TU1161240
TCTGAGCTTCACACACCTGAACGACCTGCCTGAAACACAGCACAATCAGCAGCATCACCTGGCAgcgtcctcactctctctctcagcttcaCACACCTGAACGACCTGCCTGAAACACAGCACAATCAGCAGCAACATGACATCTCAAGTGGCAGCACTTCTCTTCGTCGCGACAGTGTGCTTGGGCTATGCATCAGCATTCTCTGAGGTACCCGTGGATTGCTGTCTCCTCACCACTGAGACACGTTTCCCTCGCCACTTCAAGATGGTCTCCTACCTCCTGCAGACCACAGAGAAAGGCTGTGACATCGATGCCACTGTGTTCATCACTAAGACAGGGGTGAGATTGTGCACGCCCCATCCCACAAAGAGCAAGTGGGTGGCAGACTACATCAAACGTCTGGAGCGAACCATCTCCCTCTGAATAGCTGATACACCTCAGCAGTAAATGAGGATGAAAACAGCAGATTGAGACCAGAagaggaatgaaggagaggagtggagaagaggaatggaggatgTTATTTGATGGGGACAACTGAAGACGATACACAATTGTCCTGTCTTCAGCCACATTCATTTCaacctttttttttaaccagATACTGTAGTAGACTATTCGTCAGCAGTACATGATGTAAATGCATAGAACAGGAAGAAAATACATCAAACTGGATTTAAAAATTGGATATTCATGTAGTAAAATGTGTTTATATGGTTCGGTGGTTTTTGATTGTGATGAGTAACTGAAATATGGACCACACAACTGATAAGATTTTCCCAATGCCTGATGTGTATATCCACATTTGTTTTTGGTGCTACTGACGTTTTAAaactattattttttttaactctgtCTGTGAATAAAAGT

Function

NR:

description
PREDICTED: C-C motif chemokine 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622215.2 False 935 mRNA 0.43 4 78485116 78487202
TU1161240 True 871 TUCP 0.44 4 78485161 78487183

Neighbor

gene id symbol gene type direction distance location
LOC110536449 LOC106570861 coding downstream 8796 78468533 ~ 78476320 (-)
LOC110536447 LOC106570860 coding downstream 51630 78414793 ~ 78433486 (-)
LOC118936501 LOC106570849 coding downstream 663562 77778061 ~ 77821554 (-)
LOC110535124 LOC106570849 coding downstream 707094 77759929 ~ 77778022 (-)
erap1b LOC106570844 coding downstream 759195 77700933 ~ 77725921 (-)
cnot6l cnot6l coding upstream 287363 78774565 ~ 78797212 (-)
LOC110536655 LOC106570895 coding upstream 707671 79194873 ~ 79224499 (-)
LOC110535130 LOC106570891 coding upstream 772109 79259311 ~ 79265496 (-)
LOC110535133 LOC106570898 coding upstream 1393816 79881016 ~ 79984913 (-)
LOC110535132 LOC106570901 coding upstream 1518181 80005383 ~ 80007650 (-)
G1020796 NA non-coding downstream 4485 78480105 ~ 78480631 (-)
G1020790 NA non-coding downstream 26632 78457143 ~ 78458484 (-)
G1020789 NA non-coding downstream 29248 78453588 ~ 78455868 (-)
G1020767 NA non-coding downstream 81063 78403285 ~ 78404053 (-)
G1020763 NA non-coding downstream 93767 78389240 ~ 78391349 (-)
G1020813 NA non-coding upstream 22948 78510150 ~ 78510530 (-)
G1021075 NA non-coding upstream 30838 78518040 ~ 78518259 (-)
G1021095 NA non-coding upstream 60397 78547599 ~ 78552566 (-)
G1021104 NA non-coding upstream 84996 78572198 ~ 78572586 (-)
G1021063 ube2l3 non-coding upstream 86629 78573831 ~ 78578346 (-)
ccdc125 ccdc125 other downstream 857550 77619098 ~ 77644804 (-)
G1019926 NA other downstream 908452 77575871 ~ 77576664 (-)
G1019413 NA other downstream 1528299 76955366 ~ 76956817 (-)
G1019056 NA other downstream 1939375 76545108 ~ 76545741 (-)
ckap2l LOC106570813 other downstream 2238229 76202025 ~ 76246958 (-)
G1021084 NA other upstream 66426 78553628 ~ 78566847 (-)
G1021129 NA other upstream 146419 78633621 ~ 78634401 (-)
G1021664 NA other upstream 935308 79422510 ~ 79423479 (-)
G1021853 NA other upstream 1218017 79705219 ~ 79705722 (-)

Expression


Co-expression Network