XLOC_028482 (ccnc)


Basic Information

Item Value
gene id XLOC_028482
gene name ccnc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5764486 ~ 5775507 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055276
ACCGTTTTAATCTTCACATTGAAGTTCCACGGAGTGTTTTTTCTGTCGCGCTCCTCATCTGATCTGAACGGAGCATcgattattttaaacacaatttaacaGCACATTAAGGTTTATTTTCTACCTCAAGATGGCAGGGAACTTCTGGCAGAGTTCACATTATCTGCAGTGGGTTCTGGACAAGCAGGATCTGATGAAGGAGAGACAGAAAGATCTCAAGTTCCTCACAGAAGAGGAGTACTGGAAACTGCAGATATTTTTTGCCAATGTGATTCAAGCCTTGGGCGAACACTTGAAACTCAGACAGCAGGTCATCGCCACGGCAACTGTCTACTTTAAGCGTTTCTATGCCAGGTACTCTCTGAAGAGCATTGACCCTGTGTTAATGGCCCCAACATGTGTGTTTCTGGCCTCTAAAGTAGAGGAATTTGGTGTCGTTTCAAACACTCGGCTTATTTCAGCAGCAACGTCTGTGTtgaAAACAAGGTTCTCTTATGCCTTCCCAAAGGAGTTTCCCTTCAGAATGAACCACATCCTGGAGTGTGAATTCTACTTGCTGGAGCTCATGGACTGCTGTCTGATCGTGTATCATCCGTACAGGCCGCTATTACAGTATGTGCAGGACATGGGGCAGGAGGACATGCTGCTGCCGCTGGCTTGGAGAATAGTAAACGACACCTACAGAACAGACCTGTGTCTGCTTTACCCTCCATTTATGATTGCACTGGCTTGCCTGCATGTGGCGTGTGTGGTTCAGCAGAAAGATGCCAGACAGTGGTTTGCTGAGCTCTCTGTGGACATGGAGAAGATCCTGGAGATCATCAGGGTGATCCTGAAGCTCTATGACCAGTGGAAGAACTTTGACGATAGGAAGGAAATCGCCGCTGTGATCAACAAGGTGCCCAAACCCAAACCTCCTCCTAACAGCGAGACTGACCAGAGCTCAAACGGCAGTCAAAACAGCTCGTACAGTCagtcctagagcgccatctgcaggtGGACATGAGGCAGAGCGATCCAGAGAGGCAAAAACGGCACATCCTGGCACATTTGAATGCTGATTTTCACAAGCACATTGTTTTCTGATCGTGAGGAAACTGATtcctggcacacacacacacgcacagatttTCTCTTTCCTCTCCTCTGGAATCTTCCAACCAATCAAAGCAGACTCCACCTCCTTTTGTCCTTCCACGAATCAGAGCAGTCAAAATGATGCCACTTGTttccaccaatcagagcagaCAAAAAGACTCTACCTCCGTCCTTCCACCAATCAGAGCAGGAGGGGAGCGAACTGCTCACCAATAGGAAATCTGCTTTGATATAGAGTTTGTTGTCTAGCTTAAGGCTGTAGTGCTGAATgttttggacacacacacacacacataagcataaAAGTATGTGTTTAATGGTCCTGACTTTCTTGAAAGGTTGATTTGAAGATTCTTTTGggaacaaaaaagactttttttccTCTGTGTCTGAGAGTGAAgaggagaaagtgtgtgtgtgtgtgttgttgaatTATTGTATGCGTGCCTCTCGTCGACCATATCACAGTTTTGTATTCCTCAGGGAAACGGATCAGTCCTCTCTACAAAGTGGCTGGTTGTAAACTGATTGGCCACAGGGCTATGTGACGTGATCTATTTCGAACCCTCGTACTGTGTAAATCGATTCCTGATTGGATACTTAAACGTTTTTTCCGTTGACGTGTGTGGATGTGAGTTCGCCACTGTGAGATTTAGTGATATGGATAGTTTGATTTGATCACAAAAATGCTCCCAAAATGCATTGTAAATATGCGTTCATCCTATAGGCCTTTTTATTCTATAATTatgctgtgtgttttgttttgctttcattttgttaTTTGACGTATTTGCAGCGCACAAAGTGAtcgttcaccaaaaaatgaacatttgctcatcatttactcaacttcaggtgtttgagcttttttttctgttttcaaaaatggctgtttgttcaaactacttatttaaaatgagctgagacaacacaattattgtgttttatttctggacaacttattttttttatgttcaatttacttaaatttgtaacaacTAGTAAGTTAAATCAAGAagtgtgttgtttaagctcaatttaaataagcagttggaacaaacagcaaatgtcagtCACTTTTGAGTCTGTTAAActtaaatatttctatttatggATATTTTGAATCGTTTTGAAAACCATTGACTGCAATATAGATGAAAAAATCACCATGGGAGTCAATGGCTGCTTGTTtctttaaacattcttcaaaatatcttcttttgtgtttgatagAATAAGAAATtcatgaaggtttggaaccatttgaagatgattaaatgaaattatgtttatgttttggTGAACTATCGCTTCAAATGTTAGTTTGATGGAGGACAAGCCAATATTTTGAGTTCTTTGAGGCACTTCCTATTTTCTGCATCTCAGTTTCCTGTCATGAGAGAGACATAACTAAGAGGAAAGGTTTTATGATAAGTTGATGTTTAGCTCTGAATGGGGTTTGTTTTTGCTTCGTCTCTCACTGTGGTCTCATGTTTGGCAGTGTTTCAGGAGTGTTTATTACCTGCAAATATCTGCGTCCCTCTctgtgttgctgtgtgtgtatTATTTGCCTGTAAATATATTTCATAACGTGATAACTATGGGTATTGAGAGGGCTTGGagtgttattaatttttttttctataacggAGCTTGGAAGCCTTATTGAATAAAgctgctgctgaaaaaaaaactatagtgtGAATGTTTTTAGGTTCAgggataatgttttttttaaatctcaactCTCACGAGTCATTTGGGTCCACATTTGTGCATAAAGAGATGCATACACTTTTGAAGCAGTTCAATCTTTAAAACACTTTCTGTTTCGTTTCTTTGTATGTGTTTTCATGttctttgcatgtgt

Function

symbol description
ccnc Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within glomerular visceral epithelial cell development. Predicted to be part of mediator complex. Predicted to be active in nucleus. Orthologous to human CCNC (cyclin C).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-7369 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Acts upstream of or within glomerular visceral epithelial cell development. Predicted to be part of mediator complex. Predicted to be active in nucleus. Orthologous to human CCNC (cyclin C).

Ensembl:

ensembl_id ENSDARG00000009607

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055276 True 2968 mRNA 0.40 12 5764486 5775507

Neighbor

gene id symbol gene type direction distance location
XLOC_028481 faxca coding downstream 231 5750854 ~ 5764255 (-)
XLOC_028478 NA coding downstream 18601 5693170 ~ 5745885 (-)
XLOC_028480 NA coding downstream 24548 5739010 ~ 5739938 (-)
XLOC_028479 NA coding downstream 27141 5735370 ~ 5737345 (-)
XLOC_028477 tmem63a coding downstream 73229 5665182 ~ 5691257 (-)
XLOC_028483 pgm3 coding upstream 9463 5784970 ~ 5795309 (-)
XLOC_028484 foxm1 coding upstream 32457 5807964 ~ 5831522 (-)
XLOC_028485 slc5a8 coding upstream 74718 5850225 ~ 5863906 (-)
XLOC_028486 arl1 coding upstream 131451 5906958 ~ 5913338 (-)
XLOC_028487 NA coding upstream 337934 6113441 ~ 6116670 (-)
XLOC_028474 NA non-coding downstream 211304 5545002 ~ 5553182 (-)
XLOC_028471 NA non-coding downstream 305017 5421746 ~ 5459469 (-)
XLOC_028488 NA non-coding upstream 402079 6177586 ~ 6252483 (-)
XLOC_028491 NA non-coding upstream 801270 6576777 ~ 6580547 (-)
XLOC_028493 NA non-coding upstream 1244943 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 non-coding upstream 1409688 7185195 ~ 7185311 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_07043558_07046909 CCNC coding CI01000020 null 7043558 ~ 7046909 (+)