Gene
RNA
| Item | Value |
|---|---|
| gene id | cnot6l |
| gene name | cnot6l |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 78774565 ~ 78797212 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cnot6l | Predicted to enable poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within gene silencing by RNA; mRNA processing; and regulation of translation. Predicted to be part of CCR4-NOT complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like). |
| description |
|---|
| unnamed protein product |
| id | description |
|---|---|
| K12603 | CNOT6, CCR4; CCR4-NOT transcription complex subunit 6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036936460.1 | False | 2477 | mRNA | 0.52 | 13 | 78774565 | 78797212 |
| XM_036936458.1 | False | 4793 | mRNA | 0.51 | 13 | 78776091 | 78797212 |
| XM_036936459.1 | True | 2530 | mRNA | 0.52 | 12 | 78781063 | 78797212 |
78,776,000
78,780,000
78,784,000
78,788,000
78,792,000
78,796,000
78,800,000
78,804,000
78,808,000
78,812,000
78,816,000
78,820,000
NC_048575.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110536450 | LOC106570886 | coding | downstream | 287363 | 78485116 ~ 78487202 (-) |
| LOC110536449 | LOC106570861 | coding | downstream | 298245 | 78468533 ~ 78476320 (-) |
| LOC110536447 | LOC106570860 | coding | downstream | 341079 | 78414793 ~ 78433486 (-) |
| LOC118936501 | LOC106570849 | coding | downstream | 953011 | 77778061 ~ 77821554 (-) |
| LOC110535124 | LOC106570849 | coding | downstream | 996543 | 77759929 ~ 77778022 (-) |
| LOC110536655 | LOC106570895 | coding | upstream | 397661 | 79194873 ~ 79224499 (-) |
| LOC110535130 | LOC106570891 | coding | upstream | 462099 | 79259311 ~ 79265496 (-) |
| LOC110535133 | LOC106570898 | coding | upstream | 1083806 | 79881016 ~ 79984913 (-) |
| LOC110535132 | LOC106570901 | coding | upstream | 1208171 | 80005383 ~ 80007650 (-) |
| areg | hbegf | coding | upstream | 1248485 | 80045697 ~ 80063028 (-) |
| G1021199 | NA | non-coding | downstream | 6665 | 78767663 ~ 78767900 (-) |
| G1021198 | NA | non-coding | downstream | 9335 | 78764977 ~ 78765230 (-) |
| G1021197 | NA | non-coding | downstream | 9625 | 78764697 ~ 78764940 (-) |
| G1021194 | NA | non-coding | downstream | 16773 | 78757585 ~ 78757792 (-) |
| G1021193 | NA | non-coding | downstream | 18463 | 78755806 ~ 78756102 (-) |
| G1021204 | NA | non-coding | upstream | 513 | 78797725 ~ 78798205 (-) |
| G1021211 | NA | non-coding | upstream | 12079 | 78809291 ~ 78819495 (-) |
| G1021235 | NA | non-coding | upstream | 62842 | 78860054 ~ 78860624 (-) |
| G1021290 | NA | non-coding | upstream | 182402 | 78979614 ~ 78979933 (-) |
| G1021299 | NA | non-coding | upstream | 205046 | 79002258 ~ 79003061 (-) |
| G1021129 | NA | other | downstream | 140164 | 78633621 ~ 78634401 (-) |
| G1021084 | NA | other | downstream | 207718 | 78553628 ~ 78566847 (-) |
| ccdc125 | ccdc125 | other | downstream | 1146999 | 77619098 ~ 77644804 (-) |
| G1019926 | NA | other | downstream | 1197901 | 77575871 ~ 77576664 (-) |
| G1021664 | NA | other | upstream | 625298 | 79422510 ~ 79423479 (-) |
| G1021853 | NA | other | upstream | 908007 | 79705219 ~ 79705722 (-) |
| G1022395 | LOC106570911 | other | upstream | 1358285 | 80148560 ~ 80159395 (-) |
| G1022578 | NA | other | upstream | 1674227 | 80471439 ~ 80473767 (-) |
