Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110536455 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 78804489 ~ 78813377 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| 39S ribosomal protein L1, mitochondrial-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005034751.1 | False | 430 | mRNA | 0.40 | 4 | 78804489 | 78813377 |
| XR_005034752.1 | False | 489 | mRNA | 0.42 | 5 | 78804513 | 78813377 |
| TU1161350 | False | 474 | lncRNA | 0.42 | 5 | 78804527 | 78813376 |
| TU1161351 | True | 391 | lncRNA | 0.41 | 4 | 78804527 | 78813376 |
78,798,000
78,800,000
78,802,000
78,804,000
78,806,000
78,808,000
78,810,000
78,812,000
78,814,000
78,816,000
78,818,000
NC_048575.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cxcl13 | cxcl13 | coding | upstream | 33035 | 78770002 ~ 78772053 (+) |
| LOC110536454 | LOC100170204 | coding | upstream | 73385 | 78730292 ~ 78731104 (+) |
| LOC100135977 | LOC100135977 | coding | upstream | 85927 | 78716975 ~ 78718562 (+) |
| LOC118937413 | LOC100170204 | coding | upstream | 93832 | 78708377 ~ 78711162 (+) |
| LOC110536453 | LOC100170204 | coding | upstream | 105724 | 78696450 ~ 78698765 (+) |
| fras1 | LOC106585923 | coding | downstream | 1970 | 78815347 ~ 79167353 (+) |
| LOC110536458 | LOC106570892 | coding | downstream | 358520 | 79171897 ~ 79182526 (+) |
| LOC110536457 | LOC106585928 | coding | downstream | 519502 | 79332879 ~ 79486262 (+) |
| paqr3a | LOC106570899 | coding | downstream | 1047931 | 79861308 ~ 79876704 (+) |
| LOC110536463 | graa | coding | downstream | 1208084 | 80021461 ~ 80023984 (+) |
| G1020913 | LOC106585873 | non-coding | upstream | 22506 | 78772505 ~ 78781983 (+) |
| G1020895 | NA | non-coding | upstream | 62085 | 78742191 ~ 78742404 (+) |
| G1020870 | NA | non-coding | upstream | 132193 | 78671666 ~ 78672296 (+) |
| G1020859 | NA | non-coding | upstream | 170089 | 78633810 ~ 78634400 (+) |
| G1020854 | NA | non-coding | upstream | 183751 | 78620491 ~ 78620738 (+) |
| G1020994 | NA | non-coding | downstream | 164334 | 78977711 ~ 78978042 (+) |
| G1021030 | NA | non-coding | downstream | 238497 | 79051874 ~ 79052306 (+) |
| G1021044 | NA | non-coding | downstream | 279206 | 79092583 ~ 79093858 (+) |
| G1021045 | NA | non-coding | downstream | 279636 | 79093013 ~ 79094993 (+) |
| G1021057 | NA | non-coding | downstream | 327509 | 79140886 ~ 79141360 (+) |
| G1020906 | NA | other | upstream | 43219 | 78760943 ~ 78761270 (+) |
| LOC100301634 | LOC100135977 | other | upstream | 114808 | 78686700 ~ 78689681 (+) |
| LOC118937412 | LOC100170204 | other | upstream | 124399 | 78677740 ~ 78680090 (+) |
| G1020950 | NA | other | downstream | 57392 | 78870769 ~ 78871544 (+) |
| G1021790 | NA | other | downstream | 827545 | 79640922 ~ 79641315 (+) |
| G1021851 | NA | other | downstream | 889865 | 79703242 ~ 79704144 (+) |
| G1021894 | NA | other | downstream | 933665 | 79747042 ~ 79748127 (+) |
| G1021985 | LOC106570898 | other | downstream | 1097948 | 79911325 ~ 79919605 (+) |
