XLOC_028483 (pgm3)


Basic Information

Item Value
gene id XLOC_028483
gene name pgm3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5784970 ~ 5795309 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055277
GACGAGCGTCACTGTAGCCACGTAATCAGGGAAGCAGGAAGCGCTGCGCAAACCCTTCGCTTGCAGAAACAGCACTTAGTAAAGAAAATGGCTGAGTTTGAGGAAGTCGCTCAGAAGTCGAAGCTGCACCCGAAGCCGGAGGGTCTGACGCTGCAGTATGGCACTGCTGGATTTCGCACGAATGCCAAACATCTGGACCACATCATGTTCCGCATGGGACTTTTGGCAACTCTGAGGTCCAAAAAGACAAAATCTACCATTGGAGTCATGGTCACTGCGTCCCATAACCCTGAGGAGGATAATGGAGTGAAGTTAATCGACCCGATGGGTGAGATGGTGGCTGCAGCATGGGAGGAATACGCCACACAGCTGGCCAACGCAGAGCAGGACCATCTCCTCGCAGCGCTGAAGGACATTATAGAGAAAGAGGACATCAGCATGAGTGAAGCGGCCAGCGTTTACATCGGCAGAGACACCAGACCCAGCAGTGCAGCTCTTTCTCAGGCTGTATTGGACGGTGTTTCCAGTTTGGGAGGCAAAACTCATGATTATGGTCTGGTCAGCACTCCGCAGCTCCATTATATGGTGTGCTGCTGCAACACAAAGGGCCGCTATGGCAGTGCCACCCTTGAGGGTTATTACCAAAAACTCTCCCAGGCTTTCCTTCAACTCACCCACAATGTCCCAAATCGCACAGATGACCAGAAGAGGCTTCTGCTGGACGGAGCGAACGGCATCGGTGCATTGAAGATGAAGGAGCTGGAGCCGTTCATTCGCTCTGAACTGCAGGTTGTGCTTTCTAATGACGGCAGCAGTGGAAAACTCAACCACTTGTGTGGAGCAGATTATGTCAAAGTCCAGCAGAAAGCTCCCCAAGGTGTGAGTATGGGAGTAGGTGAACGCTGCTGTTCATTTGATGGTGATGCCGATCGCATTGTTTACTATTACACCGACTCCAAAAACTGCTTCCATCTTCTGGACGGCGACAAAATTGCTACTCTTATCAGCACTTTCCTCAAAGAGCTGCTCACACAGgcagGGCTGAACTTACAGGTTGCTGTTGTTCAGACAGCGTATGCTAACGGGAGCTCGACTCGCTATTTGGAGGACGTTATGAAGGTGGCAGTGTGTTGTACTAAAACAGGAGTGAAGCACCTTCATCATGCCGCACAGGAATATGATATTGGAGTCTACTTTGAAGCCAATGGACATGGAACTGTTTTGTTCAGCAAAGCAGCACAGAAACAGATTGTGGAGCTGGTGAAAGACTCCAACGTAAACGATGAGAGAAAACATGCTGCAAAACTCCTGGAGAACACCGTCAATCTGATCAACCAgACGGTGGGAGATGCCATCTCAGATATGCTAGTGATCGAAGCAGTTTTAGCCATCAGAGGGATGTCTGTGCAGGACTGGGATGAGATTTACACTGATCTGCCCAACCGCCAGCTTAAAGTCAcgGTGTCGGACCGGCGTGTCATTAATACAACAGATGCAGAGAGAAGGGCCGTGACTCCAGAGGGTCTGCAGGACGCCATCGACTCGCTAGTGAAGAAATACAAAAACGCTCGGTCCTTCGTTAGACCATCAGGAACTGAGGATGTGGTCCGAGTCTACGCCGAGGCCGACACACAGGAAGGTGCTGATCGTCTGGCTCATGAGGTCAGCTTGGCTGTTCATCGTCTTGCTGGAGGAGTCGGAGATGAGCCTAAACCTTTACATTAATCAAACATGCATACATTACTTCAGAATTCATCAATTGAAACGTCCTGGCAGCGTCATATATCATGTCAAGTACAGAGAATGTACATTAAACTAGTTTGTGTGGCACAGACTAATTTTTGGGATGTTTTGGGAAGGGGTAAATGTTTATCATTTACTCTTTGTACTGTACGAATGGACAATGTTTATTATTGGGAGTGTTTAATTATTTGGAAATGTCTAAACATGATCTATGTGAACTTTTGTATGCAatagatttataattattatttacagtctTAATAATTGAAGAAGAAATAAGAAATGTTCATGTGAATGTAACGGTTTTGGGAAGAAATCTAATCATGGTGATATTTATATGACCAAAAATATAAGTTCTACTAAGCAAAAACTGGAATTATGGGATCTTTTATTATACATTAGAATAGCTGTAATCATTACTCTAGTCATCAGTGTCCTCATAAATCTTTTAAATATCCTGATCAGCTGCTCAAGACTGCTCAAATAATATCAAAAGTTGTTTTATTATCAGTGCTGAAATCACTTCATGAAAAcaatcatgatttttttattatgattttttaaaaaatcaggaTTATTTACTTATCTGAaagtttaattgtttatttgacAAACGTTTATTTGGCAAAGGTGTTTCGATGTATCAATATATAACATTTGACACATAATTATCAATATGTctttgttgttttctttgtttccACCACTTTTGGTCAATTTTAATACCTCCgtgctaaaaacaaaacattaatttctaTTAAAATACTTTCTCTAAAAAGAATAAAGTCTCACTGATATTTAAACCGTAGTGAATGTGCAATCAACACGAGGCAGCTTCTCAATAAAAGCCTTATTTTAATAGATGAAGTTAGAAGACTAAGACCTAATGTAAAACATACAGGATTCCTCAGAAAACCATGTGATTTATATACTGATGTTTCTCTGATTAAACTTGCTAATGgagttttataaaataaatattttttga

Function

symbol description
pgm3 Predicted to enable phosphoacetylglucosamine mutase activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process and hemopoiesis. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in blood; intermediate cell mass of mesoderm; and notochord. Human ortholog(s) of this gene implicated in immunodeficiency 23 and teratoma. Orthologous to human PGM3 (phosphoglucomutase 3).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006048 UDP-N-acetylglucosamine biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0004610 phosphoacetylglucosamine mutase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

ZFIN:

id description
ZDB-GENE-041024-13 Predicted to enable phosphoacetylglucosamine mutase activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process and hemopoiesis. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in blood; intermediate cell mass of mesoderm; and notochord. Human ortholog(s) of this gene implicated in immunodeficiency 23 and teratoma. Orthologous to human PGM3 (phosphoglucomutase 3).

Ensembl:

ensembl_id ENSDARG00000024654

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055277 True 2731 mRNA 0.43 13 5784970 5795309

Neighbor

gene id symbol gene type direction distance location
XLOC_028482 ccnc coding downstream 9463 5764486 ~ 5775507 (-)
XLOC_028481 faxca coding downstream 20715 5750854 ~ 5764255 (-)
XLOC_028478 NA coding downstream 39085 5693170 ~ 5745885 (-)
XLOC_028480 NA coding downstream 45032 5739010 ~ 5739938 (-)
XLOC_028479 NA coding downstream 47625 5735370 ~ 5737345 (-)
XLOC_028484 foxm1 coding upstream 12655 5807964 ~ 5831522 (-)
XLOC_028485 slc5a8 coding upstream 54916 5850225 ~ 5863906 (-)
XLOC_028486 arl1 coding upstream 111649 5906958 ~ 5913338 (-)
XLOC_028487 NA coding upstream 318132 6113441 ~ 6116670 (-)
XLOC_028488 NA coding upstream 382277 6177586 ~ 6252483 (-)
XLOC_028474 NA non-coding downstream 231788 5545002 ~ 5553182 (-)
XLOC_028471 NA non-coding downstream 325501 5421746 ~ 5459469 (-)
XLOC_028491 NA non-coding upstream 781468 6576777 ~ 6580547 (-)
XLOC_028493 NA non-coding upstream 1225141 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 non-coding upstream 1389886 7185195 ~ 7185311 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_07029337_07034375 PGM3 coding CI01000020 null 7029337 ~ 7034438 (+)