LOC110535130 (LOC106570891)


Basic Information

Item Value
gene id LOC110535130
gene name LOC106570891
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 79259311 ~ 79265496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936468.1
tgtgtgtgtgccagtcagCCAGTGCATCGCGCCCCTTCTGCacgcatctctttctctctctctctctctctctgcctctcagcaAAGGGCGATATCAGCGGCACCACTGTCACTTTCAAACGACCACACAGGGACATGTACTGACGCGGAGGACGCATCGAAACCTGCTCTCCAAGGCGGCATATTGATTCAAGCATCACTTTGGTGGATTATTATTTATTGTCAACAAAAAAAAGTCAACGATGGAGGAATCCAGCTCACAGAAGTTGGTTTGGGACGGCGACGCTAAAGCCGTGCAGCAGTGTCTAACGGATATATTCACCAGTGTCTACACCACATGTGACATTCCGGAAAATGCCATTTTCGGGCCTTGTGTTTTGAGCCACACGTCGTTGTATGACAGCATAGCCTTCGTAGCGCTCAAATCAACGGACAAACGAACGGCGCCTTACATATTCAGGGTGGACACCTCAGCAGCTAACAGCACGTCTGAGGGCTTGATGTGGCTGCGGCTCGTGCAGTCGGCGCGGGACCGGGAGGAGCAGAACCTCGAGGCCTACGTGAAGAACGGTCAGCTGTTCTACCGGTCTCTCCGGAGGATCGAGAAGGACGAGGAGCTGTTGGTCTGGTACGGGAAAGACCTGAttgagctgctgctgctgctcagcGCCGGTAAAGCGCCGGTCAAGGCCAAGGGGTCGGCTCCCTATTCGTGTCCTGACTGCAACCAGCGCTTTCAATTTGAGTTCCCTTTCCTCGCCCACCTGAGGTTTCGCTGCACCAAGAGACTACAGAGCATGGCGGCGGGCGATGTGGACGAGGAGGTCCCCAGTAAGGAGCCAAGCACCGAGcgccctaaccccaaccttacaACTACCACACCCACCAGGGCAAGCCCTAAACTGGGTCGCTCGGAGGGGGACAACGCCAAACCCTCCACAGACTTCCATAACCTAGCCAGGGACCTAGAGAACAGCCGGACTAGCCCACCCAGCGACCGCGAGGCTGAGATACGCAGCGAGAgctctgggaagaggaagttcTCAGAGGTAgaggacagggatagagagagggacagggatgGTAGCAGGGCCTCTCTGAGTCTGTCTCAGTCCCTCAAGTCTAAGGAGGAGCTGGCTAGCTCGGCACAGAACTACCGGGGAGCCTACggcctggaggagaacagacgagGGCCAACGTTCTCCGCACCAGGGTCGGGATCCACTGAGTCAGGTGGTGAGGGTAAACGCAGCGCCTTCACCGAGGTCAAGAAGTCTCCACAGAGCCTAAAGACGCACGGTAACAGCGGCACCACCAAAAACCTCCAGAGCTCCAACGCCGAAAACAAGGACGGAGGTCGGCCCGGCCCCGTCAACAACCCTCCCCAGGAGAAGCATCTCAACATCAGGCAGGTTCTGTCGGAGACTCAGCCTGTCCAGCCACAGACCCGCATGGAGGCCTCTCCGCTAGGGAGCGCCTTCACCTCCGTAGCCCAGCATGGTGGGGGGAAcagtggggagaggaagagcgcATTCAGCCAACCCTCCCGCCACgctacctcctccttctcccagaTCTCTCCTCTGGTCATGACCACGCCTAAACTGCTGGACTGCCACCCGCCGGTGGGCGACACCATCTCCTCCTCTAGACTCTACCAGGCAGACCACCTGGCCGCCAAACTCCACGGCGCCGAGCTGAGCACCAACTGCCCCGTGCCGGGCGCCATGTCCAAGCAGAGCCCGTTCCTCTACGCAGCGGCTGCTGCCACAGCCTTCTGGCCTAAGAGCCAGGGCCCCATCCAGCTGCAGATGCCCTCAGCATTAACCTTACTCCCCCCCTCCTTCACCTCTCTGTGTCTGCCCGCCCAGAACTGGTGCGCCAAGTGCAACGCCTCCTTCAGGATGACCTCTGACCTGGTGTATCACATGAGGTCGCACCACAAGAAGGAGTTGGCCATGGAGCCGATGGTTAAGAGGAGGCGTGAGGAGAAACTCAAGTGTCCAATCTGTAACGAGTCGTTCAGGGAGAGGCACCACCTCTCGCGTCACATGACCTCCCACAACTGACCTTTAGATCAACAGCAAACCGTTTTCACACTGCTAGGCCAAGCTGAACTGAGCCAAGCTGAACTGAGCCAAGCTGAACTGAGCCAAGCTAAGCTGAGCCAAGCTGAGCTGAGCCAAGCTGAGCTGAGCCAAGCTGAACTGAGCCAAGCTGAGCTGAGCCAAGCTGAACTGAGCCAAGCTGAGCTGAGCCAAGCTGAGCTGAGCCAAGCTGAGCTGAGCCAAGCTGAACTGAGCCAAGCTGAGCTGGGTTACGGACTTGCATCAAATGAAGGAAACCTTTTCCACAAAGGACACTGTGTAAAGAAAATACTGTAGCCGAGCCAGCACAGTATGGCTCGGTCATCCATGAAGTTACTGGGACAGAGCATAAAGGACAATTGGAAGATAAGATACCCGAGCCAATTCAGCACAGTACGGTTTGGGTCGGCAATATAGTGGGAAAAGGTTATCACATCACTGACCATGGGGAGGAACTTTTTTACCATCTGGTAAACAGACATGGaattactaactgactgactgactggctggctgactgactgactggctgactgactggctgactgactggttgactggctgactgactggttgactggctggctagctgactggctagcagactg
>XM_036936469.1
tgtgtgtgtgccagtcagCCAGTGCATCGCGCCCCTTCTGCacgcatctctttctctctctctctctctctctgcctctcagcaAAGGGCGATATCAGCGGCACCACTGTCACTTTCAAACGACCACACAGGGACATGTACTGACGCGGAGGACGCATCGAAACCTGCTCTCCAAGGCGGCATATTGATTCAAGCATCACTTTGGTGGATTATTATTTATTGTCAACAAAAAAAAGGTGGACACCTCAGCAGCTAACAGCACGTCTGAGGGCTTGATGTGGCTGCGGCTCGTGCAGTCGGCGCGGGACCGGGAGGAGCAGAACCTCGAGGCCTACGTGAAGAACGGTCAGCTGTTCTACCGGTCTCTCCGGAGGATCGAGAAGGACGAGGAGCTGTTGGTCTGGTACGGGAAAGACCTGAttgagctgctgctgctgctcagcGCCGGTAAAGCGCCGGTCAAGGCCAAGGGGTCGGCTCCCTATTCGTGTCCTGACTGCAACCAGCGCTTTCAATTTGAGTTCCCTTTCCTCGCCCACCTGAGGTTTCGCTGCACCAAGAGACTACAGAGCATGGCGGCGGGCGATGTGGACGAGGAGGTCCCCAGTAAGGAGCCAAGCACCGAGcgccctaaccccaaccttacaACTACCACACCCACCAGGGCAAGCCCTAAACTGGGTCGCTCGGAGGGGGACAACGCCAAACCCTCCACAGACTTCCATAACCTAGCCAGGGACCTAGAGAACAGCCGGACTAGCCCACCCAGCGACCGCGAGGCTGAGATACGCAGCGAGAgctctgggaagaggaagttcTCAGAGGTAgaggacagggatagagagagggacagggatgGTAGCAGGGCCTCTCTGAGTCTGTCTCAGTCCCTCAAGTCTAAGGAGGAGCTGGCTAGCTCGGCACAGAACTACCGGGGAGCCTACggcctggaggagaacagacgagGGCCAACGTTCTCCGCACCAGGGTCGGGATCCACTGAGTCAGGTGGTGAGGGTAAACGCAGCGCCTTCACCGAGGTCAAGAAGTCTCCACAGAGCCTAAAGACGCACGGTAACAGCGGCACCACCAAAAACCTCCAGAGCTCCAACGCCGAAAACAAGGACGGAGGTCGGCCCGGCCCCGTCAACAACCCTCCCCAGGAGAAGCATCTCAACATCAGGCAGGTTCTGTCGGAGACTCAGCCTGTCCAGCCACAGACCCGCATGGAGGCCTCTCCGCTAGGGAGCGCCTTCACCTCCGTAGCCCAGCATGGTGGGGGGAAcagtggggagaggaagagcgcATTCAGCCAACCCTCCCGCCACgctacctcctccttctcccagaTCTCTCCTCTGGTCATGACCACGCCTAAACTGCTGGACTGCCACCCGCCGGTGGGCGACACCATCTCCTCCTCTAGACTCTACCAGGCAGACCACCTGGCCGCCAAACTCCACGGCGCCGAGCTGAGCACCAACTGCCCCGTGCCGGGCGCCATGTCCAAGCAGAGCCCGTTCCTCTACGCAGCGGCTGCTGCCACAGCCTTCTGGCCTAAGAGCCAGGGCCCCATCCAGCTGCAGATGCCCTCAGCATTAACCTTACTCCCCCCCTCCTTCACCTCTCTGTGTCTGCCCGCCCAGAACTGGTGCGCCAAGTGCAACGCCTCCTTCAGGATGACCTCTGACCTGGTGTATCACATGAGGTCGCACCACAAGAAGGAGTTGGCCATGGAGCCGATGGTTAAGAGGAGGCGTGAGGAGAAACTCAAGTGTCCAATCTGTAACGAGTCGTTCAGGGAGAGGCACCACCTCTCGCGTCACATGACCTCCCACAACTGACCTTTAGATCAACAGCAAACCGTTTTCACACTGCTAGGCCAAGCTGAACTGAGCCAAGCTGAACTGAGCCAAGCTGAACTGAGCCAAGCTAAGCTGAGCCAAGCTGAGCTGAGCCAAGCTGAGCTGAGCCAAGCTGAACTGAGCCAAGCTGAGCTGAGCCAAGCTGAACTGAGCCAAGCTGAGCTGAGCCAAGCTGAGCTGAGCCAAGCTGAGCTGAGCCAAGCTGAACTGAGCCAAGCTGAGCTGGGTTACGGACTTGCATCAAATGAAGGAAACCTTTTCCACAAAGGACACTGTGTAAAGAAAATACTGTAGCCGAGCCAGCACAGTATGGCTCGGTCATCCATGAAGTTACTGGGACAGAGCATAAAGGACAATTGGAAGATAAGATACCCGAGCCAATTCAGCACAGTACGGTTTGGGTCGGCAATATAGTGGGAAAAGGTTATCACATCACTGACCATGGGGAGGAACTTTTTTACCATCTGGTAAACAGACATGGaattactaactgactgactgactggctggctgactgactgactggctgactgactggctgactgactggttgactggctgactgactggttgactggctggctagctgactggctagcagactg

Function

NR:

description
PR domain zinc finger protein 8-like

GO: NA

KEGG:

id description
K20797 PRDM8; PR domain zinc finger protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936468.1 False 2695 mRNA 0.57 4 79259311 79265496
XM_036936469.1 True 2470 mRNA 0.57 3 79259311 79265496

Neighbor

gene id symbol gene type direction distance location
LOC110536655 LOC106570895 coding downstream 34812 79194873 ~ 79224499 (-)
cnot6l cnot6l coding downstream 462099 78774565 ~ 78797212 (-)
LOC110536450 LOC106570886 coding downstream 772109 78485116 ~ 78487202 (-)
LOC110536449 LOC106570861 coding downstream 782991 78468533 ~ 78476320 (-)
LOC110536447 LOC106570860 coding downstream 825825 78414793 ~ 78433486 (-)
LOC110535133 LOC106570898 coding upstream 615522 79881016 ~ 79984913 (-)
LOC110535132 LOC106570901 coding upstream 739887 80005383 ~ 80007650 (-)
areg hbegf coding upstream 780201 80045697 ~ 80063028 (-)
LOC118937416 epgn coding upstream 818487 80083983 ~ 80090278 (-)
mthfd2l LOC106570897 coding upstream 835581 80101077 ~ 80127827 (-)
G1021473 NA non-coding downstream 13712 79245306 ~ 79245599 (-)
G1021470 NA non-coding downstream 21490 79237500 ~ 79237821 (-)
G1021464 NA non-coding downstream 37424 79221555 ~ 79221887 (-)
G1021461 NA non-coding downstream 40054 79218748 ~ 79219257 (-)
G1021458 NA non-coding downstream 47210 79211739 ~ 79212101 (-)
G1021486 NA non-coding upstream 16831 79282327 ~ 79284036 (-)
G1021487 NA non-coding upstream 19592 79285088 ~ 79285376 (-)
G1021504 NA non-coding upstream 39684 79305180 ~ 79305419 (-)
G1021620 NA non-coding upstream 72047 79337543 ~ 79338188 (-)
G1021628 NA non-coding upstream 82173 79347669 ~ 79348136 (-)
G1021129 NA other downstream 624910 78633621 ~ 78634401 (-)
G1021084 NA other downstream 692464 78553628 ~ 78566847 (-)
ccdc125 ccdc125 other downstream 1631745 77619098 ~ 77644804 (-)
G1019926 NA other downstream 1682647 77575871 ~ 77576664 (-)
G1021664 NA other upstream 157014 79422510 ~ 79423479 (-)
G1021853 NA other upstream 439723 79705219 ~ 79705722 (-)
G1022395 LOC106570911 other upstream 890001 80148560 ~ 80159395 (-)
G1022578 NA other upstream 1205943 80471439 ~ 80473767 (-)

Expression


Co-expression Network