LOC110535132 (LOC106570901)


Basic Information

Item Value
gene id LOC110535132
gene name LOC106570901
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 80005383 ~ 80007650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936477.1
CACTAGATTCAACCCCCGTTCCCAAACTCCTTCCCCCGCCCCAAACCTTCCTTATTCCCCCTCCAAGATGGAGGCGCTGGAGGTTTTGGGGGGCTACCCGACCAAGCCCTTAAACCCGAGAGCCCGAATGGTCAGGGTTCTACTGAGTATGACGGTGTGCATGGGATGTTTATTAATGCTACATAGTTTTCTCAAAATCTCCAAGTCCAGGAAGCCGCAAGATTTCTATTCTTTTGAGGTGAAGGACGCCAAAGGGAGAAGCGTTTCTTTGGAGAGATACCGAGGCAAAGCGTCTCTGGTTGTCAACGTGGCGAGCCACAGCGAACACACTGAGATGAACTATCGCTCTCTGCAGGAGCTGCACCGGGAATTGGGTACGTCCCATTTCAACGTCCTGGCGTTTCCCTGCGGCCAGTTCGGGGAGACCGAGATGGGGGCCAGCCGGGACATCGAGGCCTACGCCAAGAACACCTATGGCGTCACCTTCACCATCTTCAGTAAGGTCAAAATCATGGGTTCGGAGGCGGAGCCAGCCTTCAAATTCATAACAGATTCTGTGAAGAAGGTTCCGAAGTGGAACTTCTGGAAGTTCCTGGTGAACCCAGAAGGCCAGGTGGTGAGGTTCTGGAAGGCAGAGGAGCCCGTCGACAGCGTTCGTCAGGAGGCCATAACCATGGTGCGTCAGATTATTCTAAAGAAAAGGACAGAGCTCTGACGGGATGGCGAGGAGTGGAATAAGGACACCTCTGATGGTTTCAGAGTTAGAATTAAAGGTTATGAGGTATTAATTAAGATACAAAGTCAACTCTGTTAGGTGCTGAGTGGTGACTTTAGACTTTAGGTGCCTTGTGGTATGGGAAAGGGTTTGACATTATTTTTCTGAAGATGAAGACTGAAGATGATGACTATTGCAATAAGAgattaaagggtgtgtgtgttatgccACTAAGAGGGTGACACTGACATTTCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATATTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAAGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCATGGCTTGTTAAACCAGTATAATCACCTCAAAGAACCACTATTATGTGTAACATAGATATGTCTGATTTAAAGCAGGTTGTTACTTGTTTTGTAATTTTCAGATTAAAAGACTGTTCTTTAAA
>XR_005034754.1
CACTAGATTCAACCCCCGTTCCCAAACTCCTTCCCCCGCCCCAAACCTTCCTTATTCCCCCTCCAAGATGGAGGCGCTGGAGGTTTTGGGGGGCTACCCGACCAAGCCCTTAAACCCGAGAGCCCGAATGGTCAGGGTTCTACTGAGTATGACGGTGTGCATGGGATGTTTATTAATGCTACATAGTTTTCTCAAAATCTCCAAGTCCAGGAAGCCGCAAGATTTCTATTCTTTTGAGGTGAAGGACGCCAAAGGGAGAAGCGTTTCTTTGGAGAGATACCGAGGCAAAGCGTCTCTGGTTGTCAACGTGGCGAGCCACAGCGAACACACTGAGATGAACTATCGCTCTCTGCAGGAGCTGCACCGGGAATTGGGTACGTCCCATTTCAACGTCCTGGCGTTTCCCTGCGGCCAGTTCGGGGAGACCGAGATGGGGGCCAGCCGGGACATCGAGGCCTACGCCAAGAACACCTATGGCGTCACCTTCACCATCTTCAGTAAGGTCAAAATCATGGGTTCGGAGGCGGAGCCAGCCTTCAAATTCATAACAGATTCTGTGAAGAAGGTTCCGAAGTGGAACTTCTGGAAGTTCCTGGTGAACCCAGAAGGCCAGGTGGTGAGGTTCTGGAAGGCAGAGGAGCCCGTCGACAGCGTTCGTCAGGAGGCCATAACCATGGTGCGTCAGATTATTCTAAAGAAAAGGACAGAGCTCTGACGGGATGGCGAGGAGTGGAATAAGGACACCTCTGATGGTTTCAGAGTTAGAATTAAAGGTTATGAGGTATTAATTAAGATACAAAGTCAACTCTGTTAGGTGCTGAGTGGTGACTTTAGACTTTAGGTGCCTTGTGGTATGGGAAAGGGTTTGACATTATTTTTCTGAAGATGAAGACTGAAGATGATGACTATTGCAATAAGAgattaaagggtgtgtgtgttatgccACTAAGAGGGTGACACTGACATTTCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATATTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAAGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCATGGCTTGTTAAACCAGTATAATCACCTCAAAGAACCACTATTATGTGTAACATAGATATGTCTGATTTAAAGCAGGTTGTTACTTGTTTTGTAATTTTCAGATTAAAAGACTGTTCTTTAAA
>XM_036936478.1
AATCGTGAAATCCACTAGATTCAACCCCCGTTCCCAAACTCCTTCCCCCGCCCCAAACCTTCCTTATTCCCCCTCCAAGATGGAGGCGCTGGAGGTTTTGGGGGGCTACCCGACCAAGCCCTTAAACCCGAGAGCCCGAATGGTCAGGGTTCTACTGAGTATGACGGTGTGCATGGGATGTTTATTAATGCTACATAGTTTTCTCAAAATCTCCAAGTCCAGGAAGCCGCAAGATTTCTATTCTTTTGAGGTGAAGGACGCCAAAGGGAGAAGCGTTTCTTTGGAGAGATACCGAGGCAAAGAGCTGCACCGGGAATTGGGTACGTCCCATTTCAACGTCCTGGCGTTTCCCTGCGGCCAGTTCGGGGAGACCGAGATGGGGGCCAGCCGGGACATCGAGGCCTACGCCAAGAACACCTATGGCGTCACCTTCACCATCTTCAGTAAGGTCAAAATCATGGGTTCGGAGGCGGAGCCAGCCTTCAAATTCATAACAGATTCTGTGAAGAAGGTTCCGAAGTGGAACTTCTGGAAGTTCCTGGTGAACCCAGAAGGCCAGGTGGTGAGGTTCTGGAAGGCAGAGGAGCCCGTCGACAGCGTTCGTCAGGAGGCCATAACCATGGTGCGTCAGATTATTCTAAAGAAAAGGACAGAGCTCTGACGGGATGGCGAGGAGTGGAATAAGGACACCTCTGATGGTTTCAGAGTTAGAATTAAAGGTTATGAGGTATTAATTAAGATACAAAGTCAACTCTGTTAGGTGCTGAGTGGTGACTTTAGACTTTAGGTGCCTTGTGGTATGGGAAAGGGTTTGACATTATTTTTCTGAAGATGAAGACTGAAGATGATGACTATTGCAATAAGAgattaaagggtgtgtgtgttatgccACTAAGAGGGTGACACTGACATTTCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATATTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAAGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCATGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCAGGTCCATAGTGAATTCCCTGACAACCACCATGGCTTGTTAAACCAGTATAATCACCTCAAAGAACCACTATTATGTGTAACATAGATATGTCTGATTTAAAGCAGGTTGTTACTTGTTTTGTAATTTTCAGATTAAAAGACTGTTCTTTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936477.1 False 1824 mRNA 0.48 3 80005383 80007638
XR_005034754.1 False 1794 mRNA 0.48 4 80005383 80007638
XM_036936478.1 True 1770 mRNA 0.48 3 80005383 80007650

Neighbor

gene id symbol gene type direction distance location
LOC110535133 LOC106570898 coding downstream 20470 79881016 ~ 79984913 (-)
LOC110535130 LOC106570891 coding downstream 739887 79259311 ~ 79265496 (-)
LOC110536655 LOC106570895 coding downstream 780884 79194873 ~ 79224499 (-)
cnot6l cnot6l coding downstream 1208171 78774565 ~ 78797212 (-)
LOC110536450 LOC106570886 coding downstream 1518181 78485116 ~ 78487202 (-)
areg hbegf coding upstream 38047 80045697 ~ 80063028 (-)
LOC118937416 epgn coding upstream 76333 80083983 ~ 80090278 (-)
mthfd2l LOC106570897 coding upstream 93427 80101077 ~ 80127827 (-)
LOC110536467 LOC106570909 coding upstream 297912 80305562 ~ 80320403 (-)
LOC110536470 NA coding upstream 462022 80469672 ~ 80483518 (-)
G1022093 NA non-coding downstream 71295 79932634 ~ 79934088 (-)
G1022045 NA non-coding downstream 83475 79919983 ~ 79921908 (-)
G1022085 NA non-coding downstream 101222 79900760 ~ 79904161 (-)
G1022086 NA non-coding downstream 101638 79903389 ~ 79903745 (-)
G1022084 NA non-coding downstream 114164 79890928 ~ 79891219 (-)
G1022367 NA non-coding upstream 5621 80013271 ~ 80013501 (-)
G1022368 NA non-coding upstream 6562 80014212 ~ 80014558 (-)
G1022374 graa non-coding upstream 15081 80022731 ~ 80023840 (-)
G1022375 NA non-coding upstream 16987 80024637 ~ 80024923 (-)
G1022384 NA non-coding upstream 32780 80040430 ~ 80040672 (-)
G1021853 NA other downstream 299661 79705219 ~ 79705722 (-)
G1021664 NA other downstream 581904 79422510 ~ 79423479 (-)
G1021129 NA other downstream 1370982 78633621 ~ 78634401 (-)
G1021084 NA other downstream 1438536 78553628 ~ 78566847 (-)
G1022395 LOC106570911 other upstream 147847 80148560 ~ 80159395 (-)
G1022578 NA other upstream 463789 80471439 ~ 80473767 (-)
G1022584 NA other upstream 480904 80488554 ~ 80489044 (-)
G1022604 NA other upstream 532802 80540452 ~ 80540979 (-)
G1023036 NA other upstream 886252 80893902 ~ 80898003 (-)

Expression


Co-expression Network