LOC110536463 (graa)


Basic Information

Item Value
gene id LOC110536463
gene name graa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 80021461 ~ 80023984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622234.2
gtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcatgcttgtgtgtttcCACTTTGAGGTGAACATCAGACCACATCCTctagtataaagagagagatcagagagcatcacagcacagtagCCCCTGAACTACTGAGGTTACATCAGTTAAATAACCATGATCCTCTCCACAACAGCCAGTTTCTGGACCTCTACCATGATCCTTCTATATCTGCACTCAgGTGACTGTGCAGAGATCATTGGTGGAAAGGAGGTGAAGCCTCACTCCTTACCCTACATGGCTCTACTGGAGGACAACAAAGGAAACAAAATGTGTGGAGGAATCCTGATCCACCAGCAGTGGGTTCTGACTGCGGCCCActgtactgacATCAACAAGGTGTTTCTAGGGGTCCACTCCATCaaacaggaggagaaggagactagACAGGTCCGTAAGGTGAAAGGTCGCGTCCCTCATCCCTGTTATGACGCCGAATTCAAAGTCAACGACATCATGCTGCTGAAGTTGGATAAGAAAGTAAAGCCGACTAAGGCGGTGAGACCTCTAGCGTTACCTGTCCCTGTGCCAGACGTCCAAGCAGGGACCCCCTGCTCAGTGTCTGGATGGGGAGCCACCGAGAACAATGCTAAAACCATGTCTGACGTCCTGAAATCGACCAACGTCACCGTGATCGACAGGAGAAAGTGTAACTCTGCAGACTACTACAACATGACCCCAATCATCACCTACAGCATGCTGTGTGCCGGCTCTGTGGACAAGACCAGGGTGGACtcatgtcagggagACTCTGGTGGCCCGTTGGTGTGTGGAGGTGAACTAAGGGGAGTCGTGTCGTTCGGTACAAAATGTGGCATCAAGACCAAACCGGGGGTGTACACACTCATATCGAAAATGTACCTTGACTGGATCAACAAAACCATGAGGAAGtcactgattgactgattgatacCTGCTTTCTCAGGCTTTTCTCAATCATTTGTGAAACAATTTAATATTTACTGAATTTGAATTATAACTCACGTGCTGGAAGCTGTGAAGTATGTTTGAACTCTTGCCAAGCTTTGTGTGAAGATGTCATGTGAACCTAGGCATGTGATGTAGGTACAAGATGGGAAAatatgtgtaaccgatgtgaactcgctctgagaccttgaagttgctcttttgtggagcgatgggtaacgatactttgagggtggctgtcgtcgctgtgtgcagagggtccctggttcgagcccaggtcggggtgaggagagggacggaagctatactgttacatatggcTAAAGGAGTTGCTCACAAAAATTAAAATGTGAAAACAAACAGACGTTTCAGGTGTTTTACCATCCTTTTAAATTGACTACTATCTATTCAACCTGACATGTCAAGTCTTGTTCTAGTTGGAAATAAAGTTAGTTAGTAGATAG
>XM_021622235.2
GGATATTGTTTCGTATGAGTGCCTATGTGTGCGATGTAGTTCACGATCgttatatcatcatcatcatcatcgtcgttgttgttgtcgttgttgttTTGGAAGTGTCACTATCAttaacatgtggaactctactcacgctgcgccttggtccaattaTTCACACGACGGTCGTGACAATATCAGTGTTGTTGTCCTTGTACAGATGCTGTCACTcATCAACAAGGTGTTTCTAGGGGTCCACTCCATCaaacaggaggagaaggagactagACAGGTCCGTAAGGTGAAAGGTCGCGTCCCTCATCCCTGTTATGACGCCGAATTCAAAGTCAACGACATCATGCTGCTGAAGTTGGATAAGAAAGTAAAGCCGACTAAGGCGGTGAGACCTCTAGCGTTACCTGTCCCTGTGCCAGACGTCCAAGCAGGGACCCCCTGCTCAGTGTCTGGATGGGGAGCCACCGAGAACAATGCTAAAACCATGTCTGACGTCCTGAAATCGACCAACGTCACCGTGATCGACAGGAGAAAGTGTAACTCTGCAGACTACTACAACATGACCCCAATCATCACCTACAGCATGCTGTGTGCCGGCTCTGTGGACAAGACCAGGGTGGACtcatgtcagggagACTCTGGTGGCCCGTTGGTGTGTGGAGGTGAACTAAGGGGAGTCGTGTCGTTCGGTACAAAATGTGGCATCAAGACCAAACCGGGGGTGTACACACTCATATCGAAAATGTACCTTGACTGGATCAACAAAACCATGAGGAAGtcactgattgactgattgatacCTGCTTTCTCAGGCTTTTCTCAATCATTTGTGAAACAATTTAATATTTACTGAATTTGAATTATAACTCACGTGCTGGAAGCTGTGAAGTATGTTTGAACTCTTGCCAAGCTTTGTGTGAAGATGTCATGTGAACCTAGGCATGTGATGTAGGTACAAGATGGGAAAatatgtgtaaccgatgtgaactcgctctgagaccttgaagttgctcttttgtggagcgatgggtaacgatactttgagggtggctgtcgtcgctgtgtgcagagggtccctggttcgagcccaggtcggggtgaggagagggacggaagctatactgttacatatggcTAAAGGAGTTGCTCACAAAAATTAAAATGTGAAAACAAACAGACGTTTCAGGTGTTTTACCATCCTTTTAAATTGACTACTATCTATTCAACCTGACATGTCAAGTCTTGTTCTAGTTGGAAATAAAGTTAGTTAGTAGATAG

Function

symbol description
graa resorcinol 4-hydroxylase (FADH2)

NR:

description
granzyme A-like isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622234.2 False 1447 mRNA 0.47 5 80021461 80023984
XM_021622235.2 True 1275 mRNA 0.46 4 80022148 80023984
Loading

Neighbor

gene id symbol gene type direction distance location
paqr3a LOC106570899 coding upstream 144757 79861308 ~ 79876704 (+)
LOC110536457 LOC106585928 coding upstream 535199 79332879 ~ 79486262 (+)
LOC110536458 LOC106570892 coding upstream 838935 79171897 ~ 79182526 (+)
fras1 LOC106585923 coding upstream 854108 78815347 ~ 79167353 (+)
LOC110536455 NA coding upstream 1208084 78804489 ~ 78813377 (+)
gc LOC106570911 coding downstream 112439 80136423 ~ 80158994 (+)
LOC110535134 LOC106570910 coding downstream 154522 80178506 ~ 80282552 (+)
LOC110536468 lipe coding downstream 306430 80330414 ~ 80351180 (+)
LOC110536469 LOC106570908 coding downstream 400019 80424003 ~ 80467262 (+)
LOC118937418 LOC107738445 coding downstream 447228 80471052 ~ 80478619 (+)
G1022137 NA non-coding upstream 7885 80013362 ~ 80013576 (+)
G1022122 NA non-coding upstream 26619 79994637 ~ 79994842 (+)
G1021989 NA non-coding upstream 98933 79919728 ~ 79922528 (+)
G1021982 NA non-coding upstream 113961 79906703 ~ 79907500 (+)
G1021979 NA non-coding upstream 117314 79903393 ~ 79904147 (+)
G1022149 NA non-coding downstream 15255 80039239 ~ 80039521 (+)
G1022151 NA non-coding downstream 21224 80045208 ~ 80052414 (+)
G1022153 NA non-coding downstream 29045 80053029 ~ 80054676 (+)
G1022154 hbegf non-coding downstream 31032 80055016 ~ 80055459 (+)
G1022155 NA non-coding downstream 31731 80055715 ~ 80057049 (+)
G1021985 LOC106570898 other upstream 101856 79911325 ~ 79919605 (+)
G1021894 NA other upstream 273334 79747042 ~ 79748127 (+)
G1021851 NA other upstream 317317 79703242 ~ 79704144 (+)
G1021790 NA other upstream 380146 79640922 ~ 79641315 (+)
G1020950 NA other upstream 1149917 78870769 ~ 78871544 (+)
LOC110536472 LOC106570904 other downstream 586877 80610620 ~ 80617171 (+)
G1023251 NA other downstream 1261034 81285018 ~ 81285630 (+)
G1023377 ndufs4 other downstream 1473801 81497785 ~ 81543645 (+)
G1023978 NA other downstream 2103905 82127889 ~ 82130641 (+)

Expression

LOC110536463(graa) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC110536463(graa) Expression in each Bioproject

Bar chart with 21 bars.
LOC110536463(graa) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network