XLOC_028485 (slc5a8)


Basic Information

Item Value
gene id XLOC_028485
gene name slc5a8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5850225 ~ 5863906 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055282
TTCCCTGGTCTGCCAGGGTTGTTTGTGGCAGCGGCATACAGTGGCACTTTCATGTTTATTGTCAACAGTACAGTCTCATCCAGTGTGAACGCTTTGGCTGCAGTAACTGTAACAGATGTGCTGCGGCCGTACCTCAGTCTGTCAGAAAAACAGCTGTCCTGGGCTTCAAAGGCCATGAGTTTGTTTTATGGTGCTGTGTGCATCGGAATGGCTGGCATTGCATCTATGATGGGAGGAATGCTACAGGCGGCTTTCAGTATTTCAGGAGTGATTGGTGGACCTCTGCTAGGCCTATTTTCTCTTGCAATCCTGTTTCCTTGCGCCAACTCAAAGGGAGGTTTGGCAGGACTTGTGTCTGGTTTGGGACTGTCATTGTGGGTGTGTATCGGGGCACAGATTTACCCTCCGCCAGCAGAAAACAGCAGACCGTTGACTCTGAACACACACGGCTGTAACCTCTCTATGGCACCAGACACCACTAACTGGACTGCAAGCATGGACATCTACAGAATTGAAGAAGAAACTCTAGAAAGGCCTTTGTTAGCTGATAATTGGTACTCGCTTTCATACCTCTACTTTGGCCTGTTGGGAACCGTGACAGCCATCGCAGTGGGTCTTATTGTCAGCATATTATCAGGTGGCCAACGGATGAAACTGCAGCCCGGACTCACGCTATCAAAAGAGGACCTCACCTGCTACAAAGCCTACAAAATACTCAAAGCAAAAGTTTCCGGTAATGCAGGAAAGCTGGACCTGACAAGGGAGCTGGAGGTATCATTGCGCGAAAACAACTGTGATTTCGGTGATGTTGAGTTGAGTTAAATCAAGATAAAActgaaagtttgatttaaagAGATAgcacactcaaaaatgaaaattctgtcaatatCTACTCACTCTCCACTGCTGCTTTA
>TCONS_00055283
ATAGGGGACAGAGCAGAAGTCTTCAGCGTGTGGGATTATGTGGTTTTCATCATGATGCTTGCAGTTTCAACAGGAATCGGGGTTTATTATGCGTTTGCTGCGAGATCTCAGAGCAGCTCGGCTGATTTTCTGGTGGCCGGACGGAGTTTGTCAGCCCCGCCGGTGGCTTTATCTCTGACCGCCAGCTTTATGTCTGCCATCACCGTTCTGGGGACGCCGGTGGAGGTGTACAAGTACGGAGCCATCTTCATCCTCATCTGCTTCGCTTATGCTTTTATGGTAGCTTTGAGCTCTGAGATCTTCCTGCCCGTCTTCTACAGACTGGGAGTAACAAGCACTTATGAGtaTCTGGAGATGCGTTACAATAAACATATTCGACTACTGGGGACAATCCTGTTTATCATTCAGACAGTGATAACAAGTGTGTCTGAAGTGACTCTACTGCTCTCCTCAGTCACAGGTGTAGATCTCTGGGGGGCTGTTATATCCACTGGAGTGGTCTGTACTCTCTACTGCACACTAGGTGGCCTGAAGGCAGTGGTGTGGACGGATGTGTTTCAGGTTGGCATCATGTTAGCGGGTCTATTGGCTGTGATCGTTCAATCAGTGCTGCTGCAGGGCGGGATCCCAAGGATCATCAGTGACTCCGCCCACGGGGGCAGGATCAACCTATGGGACTTCGACCCAAACCCTCTGAGGCGACACACTTTCTGGAGCATCACAGTAGGCGGGACGTTTTACTGGACCAGCTTCTATGGCATCAACCATGCTCAGGTGCAGAGATACATATCATGCAAGTCCCTGATCCACGCCAAAATggctttattcattaatttagtgACTCTGTGGGTGGTTACTTTTTGCGCAGTGTTTTGTGGCTTGTGTTTATACTCCGTTTATAAGAACTGTGACCCGTGGATGGCAAAAAAGGTGTCTGCTCAAGACCAGCTTATGCCATACCTGGTGTTGGACATCCTGAGTGAATTCCCTGGTCTGCCAGGGTTGTTTGTGGCAGCGGCATACAGTGGCACTTTTACAGTCTCATCCAGTGTGAACGCTTTGGCTGCAGTAACTGTAACAGATGTGCTGCGGCCGTACCTCAGTCTGTCAGAAAAACAGCTGTCCTGGGCTTCAAAGGCCATGAGTTTGTTTTATGGTGCTGTGTGCATCGGAATGGCTGGCATTGCATCTATGATGGGAGGAATGCTACAGGCGGCTTTCAGTATTTCAGGAGTGATTGGTGGACCTCTGCTAGGCCTATTTTCTCTTGCAATCCTGTTTCCTTGCGCCAACTCAAAGGGAGGTTTGGCAGGACTTGTGTCTGGTTTGGGACTGTCATTGTGGGTGTGTATCGGGGCACAGATTTACCCTCCGCCAGCAGAAAACAGCAGACCGTTGACTCTGAACACACACGGCTGTAACCTCTCTATGGCACCAGACACCACTAACTGGACTGCAAGCATGGACATCTACAGAATTGAAGAAGAAACTCTAGAAAGGCCTTTGTTAGCTGATAATTGGTACTCGCTTTCATACCTCTACTTTGGCCTGTTGGGAACCGTGACAGCCATCGCAGTGGGTCTTATTGTCAGCATATTATCAGGTGGCCAACGGATGAAACTGCAGCCCGGACTCACGCTATCAAAAGAGGACCTCACCTGCTACAAAGCCTACAAAATACTCAAAGCAAAAGTGAGCACACATTTATTATTGCATATATACAGATGGACAATCACTCTGTTCTTCTCACTTTTACCCTTTTTGCACTTTAAGGTTTCCGGTAATGCAGGAAAGCTGGACCTGACAAGGGAGCTGGAGGTATCATTGCGCGAAAACAACTGTGATTTCGGTGATGTTGAGTTGAGTTAA

Function

symbol description
slc5a8 Predicted to enable organic acid:sodium symporter activity. Predicted to be involved in propanoate transport; short-chain fatty acid import; and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A8 (solute carrier family 5 member 8).

GO:

id name namespace
GO:0015913 short-chain fatty acid import biological_process
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0015730 propanoate transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0005343 organic acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141211-63 Predicted to enable organic acid:sodium symporter activity. Predicted to be involved in propanoate transport; short-chain fatty acid import; and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A8 (solute carrier family 5 member 8).

Ensembl:

ensembl_id ENSDARG00000087120

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055282 False 914 mRNA 0.47 8 5850225 5856200
TCONS_00055283 True 1869 mRNA 0.49 14 5850317 5863906

Neighbor

gene id symbol gene type direction distance location
XLOC_028484 foxm1 coding downstream 18703 5807964 ~ 5831522 (-)
XLOC_028483 pgm3 coding downstream 54916 5784970 ~ 5795309 (-)
XLOC_028482 ccnc coding downstream 74718 5764486 ~ 5775507 (-)
XLOC_028481 faxca coding downstream 85970 5750854 ~ 5764255 (-)
XLOC_028480 NA coding downstream 110287 5739010 ~ 5739938 (-)
XLOC_028486 arl1 coding upstream 43052 5906958 ~ 5913338 (-)
XLOC_028487 NA coding upstream 249535 6113441 ~ 6116670 (-)
XLOC_028488 NA coding upstream 313680 6177586 ~ 6252483 (-)
XLOC_028489 MDFIC coding upstream 475666 6339572 ~ 6416414 (-)
XLOC_028490 foxp2 coding upstream 559135 6423041 ~ 6623645 (-)
XLOC_028478 NA non-coding downstream 104340 5693170 ~ 5745885 (-)
XLOC_028479 NA non-coding downstream 112880 5735370 ~ 5737345 (-)
XLOC_028474 NA non-coding downstream 297043 5545002 ~ 5553182 (-)
XLOC_028471 NA non-coding downstream 390756 5421746 ~ 5459469 (-)
XLOC_028491 NA non-coding upstream 712871 6576777 ~ 6580547 (-)
XLOC_028493 NA non-coding upstream 1156544 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 non-coding upstream 1321289 7185195 ~ 7185311 (-)

Expression


Co-expression Network