XLOC_028486 (arl1)


Basic Information

Item Value
gene id XLOC_028486
gene name arl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5906958 ~ 5913338 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055284
ATGGGAGGATTCTTTTCCAGCCTCTTCTCTGGCCTGTTTGGCACCAGAGAGATGAGAATCCTTATTTTAGGTCTGGATGGAGCTGGAAAAACCACAATATTGTACAGACTTCAAGTGGGAGAAGTGGTCACCACAATTCCtaCTATTGGGTTTAATGTGGAGACTGTGACTTATAAGAACCTTAAGTTTCAAGTGTGGGATCTTGGTGGACAGACGAGTATCAGGCCATACTGGCGGTGTTACTACTCCAACACGGATGCAGTGATTTACGTGGTGGACAGCAGTGATCGTGACCGAATGGGCATCTCCAAATCTGAACTGGTGGCTATGTTGGAGgAGGAAGAGCTGAAGAAAGCCATCCTGGTGGTGTTCGCGAACAAGCAGGACATGGAGCAAGCAATGACTCCAACCGAAGTGGCCAACGCTCTCGGTTTACCTGCGCTTAAAGACAGAAAGTGGCAGATCTTCAAGACGTCTGCTACTAAAGGCACTGGCCTGGACGAGGCAATGGAATGGTTAGTGGAGTCACTGAAGAGCCGGCAGTAAATGCACTCAGAAAGAAAAGACCTTGTAAATAGGAACTTCAGAGACTTCTTATCGAGTGTCCTTTGGACCAATGACTGCGTTCTTCCTATTGTGTGAAGATCCTTCCCGTCGAGTGCAGAGACTGATCGACTGGTGTTGAACGGATGAACTCTACAAATGTTTCCCCCTAccctcttctctttttttttttttttttttttgcttttcgtCTGTTTTTGGTAAACCGTATCCACTACATTTGTAACCTCAAAAGGTGTTTGCTTGTTAAATTTGAGATGGGGAATAATCATCGCAGCTGGTAATTGAGTTAAAGTGGGTCGATATTTAAGACTAATCGTCATTTGTATGCTTTGGATTTGTAatggcatatttatatttgcacgtGTACAGGGGAGTGCACTCCTGGCGTTATGGCTGTGAAACAATAAATATGCAGTCTACACATTTTGCGTTGTGATTAGCATCAAACTGGTGCTTTTGCATGATTTTTGGGCgggttttatttaaaaacattgcaCAAGTTGCAGAAAAATCAATATATTGATGCATACTATTGGTCTTTTGACCACAGAGTAGGGTTTAGGTGATGTTTATGTTGTTTCTGGCCAACACACAGAccctatataagctgtgttttaCAAAGAAAACATAGTTCAGCTAATAATTGCTAAGTCTTTCAGTGAGGTGCCTTTATGTTTCTTTGCCTTTAGTCCTGTACGCACAAACTCCATTTTCCTCTTTTTGGCCTCGTTTTTCTTCAGCTGCTTCTTTACCTTCTTTTTGGCAGCAATGTCAGGATTTACGACAGCCTGTCAGGAGGGAAAAGAGAAATTGTGAATTATTTTAGATTAGTAGAAGCTAAAATGTATCATAGAAATGACTCCATGTTCTGAGGGAACTACAAGTAAACGAAGCGTTAAGACACAATAAACATGCTACATGTTTGCTGGTCTGATTCTGAAGTGGATGATACTCAATAAAGGTGTAAAACAAGGTCTAAAAACATTGTTAGCACATTTGGTCGGATTGCTTTCATAGTGTAAACACTCCTGTAGATGAAATATCTCTCTACTACTGACCGAATATGTGAGTGTTATTGTACGTGCTGTGAGAAATCTCACTAAAATGAAGATCATACTCATTAAAAAGGTATTCATACTTCATAGTACTGTATCAAAATACAGATCTAACAGTTCCCATAAAGTTGATGTAGAGTAGGGATGCCCAATACGTCAATTGCGATTTTTTTTCCAGGCGATAACAAAGGTAGCGTGTGTAGATAGcatggcattaaaaaaaatagacaTCAGCCTATCATCCATCCTCACTGAAATGTGTCGCTTGATTGACATACAGAGCAGCCAGTCTGATATCGGGCCATTTCTGATGCATGGGTAACCATGTAAAACTGCACCAACTACGTTAAATGCTGCAAAACTATAGTTTAGCGAAGTCCAAATGTGATTCCAACATGACTGATGATCATTTGGAAGTGTGCTTGAGGCTGGCTATCAGCAGCTACTGTCCGGATAATGCTTGCCTGGCTGATTCCATTCTGTGTAAGTCATCAGAGTAAGGAAATGACAAAAATATGCACACAGTTGAGGGCTATTGCACAATGGGTTCATACACTTATGTAAGGCACATTAATATAAATTGTACAAATACAGAATTCtcaatatgtttataaataaatatatatttagcagttttatatTAGGTAGATCATTTTGACCTGGTCGTTTTATAAGTAGCTCACATGTTGAAAAAGTGTGGGTACTCCTGATGCAGAGTATGACTAAATAAGATTGGTCTTGACAAAATCTGAATGCATGTTAATACAGAGCTTTAGAAGTCTTACCTGCAAGGCCTTGACTTTTTTGCGTGACGCTCGTCTCTGAGTGGCTTCTTTCTGCACTGCAGCGAAAGCCAGAGAGAATTTCTCCAGACCGACCAGCTTCTTCAACAGCTCGATCAGCTCCTGAGCCAAGTTCTTCAGCGTGgggtctgaaaaaaaaatgaccaaagtcATGCAAATGTGTGTTTTTGCCACGTAGTTGGATTGGATGAGGTAGCAGCATTATGCTTAACAGTTCTGTTTGGCATTCAGTAATGATAGATTTTTTGCATGCAGCTTTTAAAAGGTAAATCAATACAGGTTATAAAGATATACTGAGATGCACTGtgcataaaatttatttatttatttatttagtaaataaaggTATACGGAGTTACTTTTAGTTTTTTCCAATTGTAATTTTTTAGGTAATGATGTGATTGTTTATTTACAAGTCTGCTTCCTCTGCAGGGTAAAAATTGCAACTTTTGCTTTGACTCTTCTCAATTTGTTTATCTTTAAATGTTGATTTGTTTTACAGAAATACAACTATGTTTAGGGACTGAGCACCAGTGGTGTGTAGGCCCTAATGAAATTGCtcctattatcattattattattgatttgttCCGGAATGAATCAAAATGTTCTGGGTCTGAACATGCTCAAAACctcacaaaactttgcacacacATCAGAAGTGGTAAACATTTACGTTTGATATAGCTTTCAGAAGTGTGTGTGGTAAAGAGGCTCGACAGTAACGTTCAACGAAGTGCCTCGCAAACTATGTTTCATGCACGCGCACACATCAAACAAGCCAATACCTACAAGAAAGTCTCTTGGAGCTAAATTTAAAACCCAAGAGGAAGTTGGACATTTTTATGAATTATAACtgtatttttttaagattaaaaaaattatttaaaaaaataaataaatatacttttttcacATAACTGGAAGGTTAATTTGCAAATTTTCTGAAAGTCTGAGTTTATGCATCTCACAATTCTGGATTTTATTATACAGAATTGCAACTATTTCtcacaaatgtcactttatttcttttaattctgtttttccttgttcataatTGCAATATATAATTTAAGATATAAAAGTTGCAAGCCAAATTAGATGAAGCCTGACAGTAAATGTCAGAATTTGCGAGATGTTGACCACTCCAAGAAAGTAATAAAAGATAAATGATGCCATGAAAAAACAAAGTTCCACTGTTATGAACAGTTTCCTAAAATAATTGAGTTTTTGTTCGCTTGTTTCTGCTTTATGAACTGACCTTGGTCTGCATATGTGCTGTCCAGTTCTCTATAAAGAGGAGCGATGATTGTGGTGAGATATGGTCCAAGACGATCTTTTCCAAGATCCACCGCTATGGCTCCCAAGAACTTAAAAACACAAGTTCTCTACAAAAACAACAGACAGGTGGGTTTACATCAGCAAAACACAAATACCTTTCAAGATATTTAAGCAGAAAGACAGGCTTAATGTCCACCTTGAGTGGCACTTTGGGTGTGTTCGCCGCTTCTCTTTTGGCCAGTAATGAAAGCTTCTTCATCACCCAGAGGAGAGACGGAGGTTTGTTGTCGTTCTGTTGCTCCTCGAGCTTCTGCTCCTGTTCTCCTCCATTGGTCTCAGTGTTTTCTGCCGTTTCCTCCTCTATATTCTCTTGTTCTTCAGGTGGATTTACGCTATCAGACTCTGGTGAGATCAGGTAGATCACTTTGGCCACATAGAGCAAGTTCTTCACCACCTGATAAAAGATTAAATCACAATTAAAATCATACTGCAagaataatatgaatatttataattatttaaaaaatgttaatatgaaACCAGGGATTAGACATTTTAATCACAGGAGTACAATATTAG
>TCONS_00055285
GGAGGATTCTTTTCCAGCCTCTTCTCTGGCCTGTTTGGCACCAGAGAGATGAGAATCCTTATTTTAGGTCTGGATGGAGCTGGAAAAACCACAATATTGTACAGACTTCAAGTGGGAGAAGTGGTCACCACAATTCCtaCTATTGGGTTTAATGTGGAGACTGTGACTTATAAGAACCTTAAGTTTCAAGTGTGGGATCTTGGTGGACAGACGAGTATCAGGCCATACTGGCGGTGTTACTACTCCAACACGGATGCAGTGATTTACGTGGTGGACAGCAGTGATCGTGACCGAATGGGCATCTCCAAATCTGAACTGGTGGCTATGTTGGAGgAGGAAGAGCTGAAGAAAGCCATCCTGGTGGTGTTCGCGAACAAGCAGGACATGGAGCAAGCAATGACTCCAACCGAAGTGGCCAACGCTCTCGGTTTACCTGCGCTTAAAGACAGAAAGTGGCAGATCTTCAAGACGTCTGCTACTAAAGGCACTGGCCTGGACGAGGCAATGGAATGG

Function

symbol description
arl1 Predicted to enable GTP binding activity; GTPase activity; and enzyme activator activity. Predicted to be involved in several processes, including activation of phospholipase D activity; protein localization to Golgi apparatus; and retrograde transport, endosome to Golgi. Predicted to be located in trans-Golgi network. Predicted to be active in Golgi apparatus. Is expressed in anterior axial hypoblast; axial chorda mesoderm; axis; notochord; and polster. Orthologous to human ARL1 (ADP ribosylation factor like GTPase 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0031584 activation of phospholipase D activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007030 Golgi organization biological_process
GO:0009404 toxin metabolic process biological_process
GO:0034067 protein localization to Golgi apparatus biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040718-175 Predicted to enable GTP binding activity; GTPase activity; and enzyme activator activity. Predicted to be involved in several processes, including activation of phospholipase D activity; protein localization to Golgi apparatus; and retrograde transport, endosome to Golgi. Predicted to be located in trans-Golgi network. Predicted to be active in Golgi apparatus. Is expressed in anterior axial hypoblast; axial chorda mesoderm; axis; notochord; and polster. Orthologous to human ARL1 (ADP ribosylation factor like GTPase 1).

Ensembl:

ensembl_id ENSDARG00000101680

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055284 False 4285 mRNA 0.38 6 5906958 5913338
TCONS_00055285 True 513 mRNA 0.49 4 5911341 5912951

Neighbor

gene id symbol gene type direction distance location
XLOC_028485 slc5a8 coding downstream 43052 5850225 ~ 5863906 (-)
XLOC_028484 foxm1 coding downstream 75436 5807964 ~ 5831522 (-)
XLOC_028483 pgm3 coding downstream 111649 5784970 ~ 5795309 (-)
XLOC_028482 ccnc coding downstream 131451 5764486 ~ 5775507 (-)
XLOC_028481 faxca coding downstream 142703 5750854 ~ 5764255 (-)
XLOC_028487 NA coding upstream 200103 6113441 ~ 6116670 (-)
XLOC_028488 NA coding upstream 264248 6177586 ~ 6252483 (-)
XLOC_028489 MDFIC coding upstream 426234 6339572 ~ 6416414 (-)
XLOC_028490 foxp2 coding upstream 509703 6423041 ~ 6623645 (-)
XLOC_028491 NA coding upstream 663439 6576777 ~ 6580547 (-)
XLOC_028478 NA non-coding downstream 161073 5693170 ~ 5745885 (-)
XLOC_028480 NA non-coding downstream 167020 5739010 ~ 5739938 (-)
XLOC_028479 NA non-coding downstream 169613 5735370 ~ 5737345 (-)
XLOC_028474 NA non-coding downstream 353776 5545002 ~ 5553182 (-)
XLOC_028471 NA non-coding downstream 447489 5421746 ~ 5459469 (-)
XLOC_028493 NA non-coding upstream 1107112 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 non-coding upstream 1271857 7185195 ~ 7185311 (-)

Expression


Co-expression Network