XLOC_028487


Basic Information

Item Value
gene id XLOC_028487
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6113441 ~ 6116670 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057320
tttttcaacagatttgtAAACTTTATGTAATATCAGTAGCTGTGTCAAGCTTGGATAAATGTGCCAGCTGCAGTGGGCCCTACAATGCATTCAAGTGGATTAGGGTGAAATGTAAAATCATTCTCAAATCTTCTGAAAATTACGCAAGAAGAAAAACAAAGACCATGGTCTCCTGATGAAATTGCTGCAGTATTGAGACATTTCCAAAGCCATGTTTCCAAGGGTAAACTTGCCACAAAAATAGAATGCCAACAATGCAAATCCGCAGAGCATCCTATGTTGGCAAATCGCTCCATTCAAAACATCAGGGACTTTGTCAGAAACAGGTTTGATGCTGAAATGGAATCAGGTAGAAGTAGTCTTTTTGATAACACTTGACTTAAAGAATgtgtttataaaactgtaataaaaactatataattgTTACAAATGTCATGActaatgaatgagatttt

Function

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0048731 system development biological_process
GO:0048732 gland development biological_process
GO:0048468 cell development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0007517 muscle organ development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0001570 vasculogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057320 True 455 lncRNA 0.35 2 6113441 6116670

Neighbor

gene id symbol gene type direction distance location
XLOC_028486 arl1 coding downstream 200103 5906958 ~ 5913338 (-)
XLOC_028485 slc5a8 coding downstream 249535 5850225 ~ 5863906 (-)
XLOC_028484 foxm1 coding downstream 281919 5807964 ~ 5831522 (-)
XLOC_028483 pgm3 coding downstream 318132 5784970 ~ 5795309 (-)
XLOC_028482 ccnc coding downstream 337934 5764486 ~ 5775507 (-)
XLOC_028488 NA coding upstream 60916 6177586 ~ 6252483 (-)
XLOC_028489 MDFIC coding upstream 222902 6339572 ~ 6416414 (-)
XLOC_028490 foxp2 coding upstream 306371 6423041 ~ 6623645 (-)
XLOC_028491 NA coding upstream 460107 6576777 ~ 6580547 (-)
XLOC_028492 ifrd1 coding upstream 683124 6799794 ~ 6809323 (-)
XLOC_028478 NA non-coding downstream 367556 5693170 ~ 5745885 (-)
XLOC_028480 NA non-coding downstream 373503 5739010 ~ 5739938 (-)
XLOC_028479 NA non-coding downstream 376096 5735370 ~ 5737345 (-)
XLOC_028474 NA non-coding downstream 560259 5545002 ~ 5553182 (-)
XLOC_028471 NA non-coding downstream 653972 5421746 ~ 5459469 (-)
XLOC_028493 NA non-coding upstream 903780 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 non-coding upstream 1068525 7185195 ~ 7185311 (-)
XLOC_028496 CR354372.1 non-coding upstream 1105410 7222080 ~ 7222367 (-)

Expression


Co-expression Network