XLOC_028488


Basic Information

Item Value
gene id XLOC_028488
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6177586 ~ 6252483 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058039
AATTAAGCATGGAAGGGAAGGGATCTCTGGGAGGACCGTGGGTTTGGAGAGGCCTTGAGCCCGAGCTTTGGACGCTCTGGAGGTGGGATATCCAGCGGATATGCATAAACGGACTGGAGAGGATGAAAGCTGTTCAGCAGATAAAGCCATAGCAGCCTGTCGGAATCCAGCCACGCCGGCCCTGATTTATGACCAACTCAGTCAAACTCCCTACCACTGTACCTGACAAACACAAAAGGTCTGCTCCATCACACTGAACCTGAGGACACATCCAGCAGCACTCTGATGTTCCCTGCTCTCCCAACATTAAAAAGTCTGGATAAAAGGTTCAGTGGTCTCCTGTTGTGTGCGAGGTGTGAAAGGCACTGCACACTTCTTGAGGAGTTGAGGACAGACTGAGACTctgtactgctgaacagctgtcATTCCCTGCTCACTGTCACACGCCTGCACTTCTGGCAGCTCCACCGCCATCAGCAGCGTTTATTTATCTGACGAGGAGAAACAAGAGCTCCAATAACACCAGGAGCGGATGATGAAGTCTTAGATCATCGTCTGACTCAAACCACCACGAACTAGATGTCCAGCCAGCAGCTTCTGCGGGGAACATCTCGTATCTGGCAGAAATCTCGATGCGATCAGATATCGGACGGTA
>TCONS_00058042
GCAGAATCAATTAAGCATGGAAGGGAAGGGATCTCTGGGAGGACCGTGGGTTTGGAGAGGCCTTGAGCCCGAGCTTTGGACGCTCTGGAGGTGGGATATCCAGCGGATATGCATAAACGGACTGGAGAGGATGAAAGCTGTTCAGCAGATAAAGCCATAGCAGCCTGTCGGAATCCAGCCACGCCGGCCCTGATTTATGACCAACTCAGTCAAACTCCCTACCACTGTACCTGACAAACACAAAAGGTCTGCTCCATCACACTGAACCTGAGGACACATCCAGCAGCACTCTGATGTTCCCTGCTCTCCCAACATTAAAAAGTCTGGATAAAAGTCTCCTGTAACCTACAGATGGCCACCTGAGGAGAAGTCAAACCATGAGGCCACGCTTGGCTTTCTTGGAAATCACACCTCAGTGACGCACATCACAACTCAATCACCCACGAGCACCATCCAGGCACACACCTCCACCCCCTTGTTGACTTGATTAGGGTTCAGTGGTCTCCTGTTGTGTGCGAGGTGTGAAAGGCACTGCACACTTCTTGAGGAGTTGAGGACAGACTGAGACTctgtactgctgaacagctgtcATTCCCTGCTCACTGTCACACGCCTGCACTTCTGGCAGCTCCACCGCCATCAGCAGCGTTTATTTATCTGACGAGGAGAAACAAGAGCTCCAATAACACCAGGAGCGGATGATGCATTCACGCAGAGATTCTCAGACCGCCATCTCTTCGTTGATGTGTCTTCAAAAAAGCAGCGGAGGGAACGAGAGAATGGAGGGAGGAGGTgcaaagaagaggaggaggagAAGTCTTAGATCATCGTCTGACTCAAACCACCACGAACTAGATGTCCAGCCAGCAGCTTCTGCGGGGAACATCTCGTATCTGGCAGAAATCTCGATGCGATCAGATATCGGACGGTA
>TCONS_00058041
GCAGAATCAATTAAGCATGGAAGGGAAGGGATCTCTGGGAGGACCGTGGGTTTGGAGAGGCCTTGAGCCCGAGCTTTGGACGCTCTGGAGGTGGGATATCCAGCGGATATGCATAAACGGACTGGAGAGGATGAAAGCTGTTCAGCAGATAAAGCCATAGCAGCCTGTCGGAATCCAGCCACGCCGGCCCTGATTTATGACCAACTCAGTCAAACTCCCTACCACTGTACCTGACAAACACAAAAGGTCTGCTCCATCACACTGAACCTGAGGACACATCCAGCAGCACTCTGATGTTCCCTGCTCTCCCAACATTAAAAAGTCTGGATAAAAGTCTCCTGTAACCTACAGATGGCCACCTGAGGAGAAGTCAAACCATGAGGCCACGCTTGGCTTTCTTGGAAATCACACCTCAGTGACGCACATCACAACTCAATCACCCACGAGCACCATCCAGGCACACACCTCCACCCCCTTGTTGACTTGATTAGGGTTCAGTGGTCTCCTGTTGTGTGCGAGGTGTGAAAGGCACTGCACACTTCTTGAGGAGTTGAGGACAGACTGAGACTctgtactgctgaacagctgtcATTCCCTGCTCACTGTCACACGCCTGCACTTCTGGCAGCTCCACCGCCATCAGCAGCGTTTATTTATCTGACGAGGAGAAACAAGAGCTCCAATAACACCAGGAGCGGATGATGAAGTCTTAGATCATCGTCTGACTCAAACCACCACGAACTAGATGTCCAGCCAGCAGCTTCTGCGGGGAACATCTCGTATCTGGCAGAAATCTCGATGCGATCAGATATCGGACGGTA
>TCONS_00058040
GCAGAATCAATTAAGCATGGAAGGGAAGGGATCTCTGGGAGGACCGTGGGTTTGGAGAGGCCTTGAGCCCGAGCTTTGGACGCTCTGGAGGTGGGATATCCAGCGGATATGCATAAACGGACTGGAGAGGATGAAAGCTGTTCAGCAGATAAAGCCATAGCAGCCTGTCGGAATCCAGCCACGCCGGCCCTGATTTATGACCAACTCAGTCAAACTCCCTACCACTGTACCTGACAAACACAAAAGGTCTGCTCCATCACACTGAACCTGAGGACACATCCAGCAGCACTCTGATGTTCCCTGCTCTCCCAACATTAAAAAGTCTGGATAAAAGGTTCAGTGGTCTCCTGTTGTGTGCGAGGTGTGAAAGGCACTGCACACTTCTTGAGGAGTTGAGGACAGACTGAGACTctgtactgctgaacagctgtcATTCCCTGCTCACTGTCACACGCCTGCACTTCTGGCAGCTCCACCGCCATCAGCAGCGTTTATTTATCTGACGAGGAGAAACAAGAGCTCCAATAACACCAGGAGCGGATGATGCATTCACGCAGAGATTCTCAGACCGCCATCTCTTCGTTGATGTGTCTTCAAAAAAGCAGCGGAGGGAACGAGAGAATGGAGGGAGGAGGTgcaaagaagaggaggaggagAAGTCTTAGATCATCGTCTGACTCAAACCACCACGAACTAGATGTCCAGCCAGCAGCTTCTGCGGGGAACATCTCGTATCTGGCAGAAATCTCGATGCGATCAGATATCGGACGGTA

Function

GO:

id name namespace
GO:0006399 tRNA metabolic process biological_process
GO:0001510 RNA methylation biological_process
GO:0009451 RNA modification biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058039 False 655 lncRNA 0.51 4 6177586 6252475
TCONS_00058042 False 931 lncRNA 0.52 6 6177586 6252483
TCONS_00058041 False 821 lncRNA 0.52 5 6177586 6252483
TCONS_00058040 True 773 lncRNA 0.51 5 6177586 6252483

Neighbor

gene id symbol gene type direction distance location
XLOC_028487 NA coding downstream 60916 6113441 ~ 6116670 (-)
XLOC_028486 arl1 coding downstream 264248 5906958 ~ 5913338 (-)
XLOC_028485 slc5a8 coding downstream 313680 5850225 ~ 5863906 (-)
XLOC_028484 foxm1 coding downstream 346064 5807964 ~ 5831522 (-)
XLOC_028483 pgm3 coding downstream 382277 5784970 ~ 5795309 (-)
XLOC_028489 MDFIC coding upstream 87089 6339572 ~ 6416414 (-)
XLOC_028490 foxp2 coding upstream 170558 6423041 ~ 6623645 (-)
XLOC_028491 NA coding upstream 324294 6576777 ~ 6580547 (-)
XLOC_028492 ifrd1 coding upstream 547311 6799794 ~ 6809323 (-)
XLOC_028493 NA coding upstream 767967 7020450 ~ 7024297 (-)
XLOC_028478 NA non-coding downstream 431701 5693170 ~ 5745885 (-)
XLOC_028480 NA non-coding downstream 437648 5739010 ~ 5739938 (-)
XLOC_028479 NA non-coding downstream 440241 5735370 ~ 5737345 (-)
XLOC_028474 NA non-coding downstream 624404 5545002 ~ 5553182 (-)
XLOC_028494 FO681358.2 non-coding upstream 932712 7185195 ~ 7185311 (-)
XLOC_028496 CR354372.1 non-coding upstream 969597 7222080 ~ 7222367 (-)
XLOC_028498 NA non-coding upstream 1285532 7538015 ~ 7546117 (-)

Expression


Co-expression Network