ypel1 (ypel1)


Basic Information

Item Value
gene id ypel1
gene name ypel1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83873900 ~ 83903039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936554.1
GTTCTTTTTTAGGCAACATATTATATTCTATAAACAGCCTCACCTGCACGTATAATAAGGCATGTAACCTTGTGTGGATCTTGTCGTGATCAGTATGATAATATCTCCCTGTATTTATTTACACATCCGGGTGTTTCTCCACCTCAGCCGCAGCCTCCCCTTATTGGTCGCTGTAGCTGTCTGTCATAATCTGGGTCTGTCCCAGCAGTGACGTTAGACGAGGCTACCACGAACACAAAGACAACAACAAAGACGGACGGAGGAAAAGGACAGCTTTTAGTGATCGCTGCTGCTGGATACCTGACAACATCACTCCTTGACCATTACACAAGCACACTAGAAAGAGGACAACCGTTTCATGATATGAAAAACATTACCATCAAGCACACAAGTCAATATATGTCAAGATTCGCTCTGAGCAGATTCGTTTCAGGTGGTGTAGTTTCCTCGTGGTTGCTGTGTGGAGCCTGCCGCCACACACCCACTCCTCAACAACGACGGCTTTTGCTTGCATCTTCCAGTGCTTCTTCTGTCAGCAAGTTCAGCAGAGCTGCTGCTCGTCCGCCGCTAGCCCGGACGCCGCAGCCCCCGGCACATCAGCCAATCACAGCCCAGAGCCCCGCCCATGTGACATGGTGAAGATGACCAAGTCGAAGACGTTTCAGGCCTACCTGCCCTCGTGTCATCGCACCTACAGCTGTATACACTGTCGGGCACACCTGGCCAACCACGACGAACTCATCTCTAAGtcATTCCAAGGAAGCCAGGGGAGAGCCTACCTCTTTAACTCTGTtgTGAACGTGGGCTGTGGGCCGGCAGAGGAGCGGGTTCTCCTAACAGGTCTACATGCCGTCGCTGACATCTACTGTGAAACCTGTAAAACCACTCTGGGATGGAAATACGAACATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATCATCGAGCTGGCTCACATGATTAAAGACAATGGTTGGGAGTGACATCGCTTCCTGTCTCCGGCCCGTTAATGACCTCTGACCTATCAGAGCTCTGGATCTATCAGACTTCACAGAGCGACAACCAATCACCATCAACCACCCACCGTGCCGCCCCCTCctaacacacgcacaaacacacccacacacacacagtccctgcTGGTTGTGAAACTGAACATGATGCTGTTGAACTGGAGAGATGACTAGCCTATTGGGGGTTGGACCTTCAGTGAAGACCATGTGATCTCACCAGCCAATGACAGACAGCTGGACTTTAATTGGCTCCTCCTTCATCAACCAGGCCCCACCCACCTCACTGGCGTTGGCACTTAGTTACACGGCTGCCATAGCGATGTGAGAGAGAGGATAACATGATAACGTTCTActaccctcttcctcctctgacccgggaggaagaggaggtgttgCAGGAAGGAAGGGGACAGGGTGGcacagtggggggggggtgtttctCCT
>XM_036936555.1
CAGTGAGGTGACGTCTCCGTCTTTGGGGCCGTGGCAGCCCGGGCACAGACTGTGTTGTGAATGTGACATGCAGCTTCAGCGGAGTAATTATTACCTCCGCTTCCTACGTTCAAACGGGAATAAAACATTGTTTTGTGTGTAGTTTCCTCGTGGTTGCTGTGTGGAGCCTGCCGCCACACACCCACTCCTCAACAACGACGGCTTTTGCTTGCATCTTCCAGTGCTTCTTCTGTCAGCAAGTTCAGCAGAGCTGCTGCTCGTCCGCCGCTAGCCCGGACGCCGCAGCCCCCGGCACATCAGCCAATCACAGCCCAGAGCCCCGCCCATGTGACATGGTGAAGATGACCAAGTCGAAGACGTTTCAGGCCTACCTGCCCTCGTGTCATCGCACCTACAGCTGTATACACTGTCGGGCACACCTGGCCAACCACGACGAACTCATCTCTAAGtcATTCCAAGGAAGCCAGGGGAGAGCCTACCTCTTTAACTCTGTtgTGAACGTGGGCTGTGGGCCGGCAGAGGAGCGGGTTCTCCTAACAGGTCTACATGCCGTCGCTGACATCTACTGTGAAACCTGTAAAACCACTCTGGGATGGAAATACGAACATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATCATCGAGCTGGCTCACATGATTAAAGACAATGGTTGGGAGTGACATCGCTTCCTGTCTCCGGCCCGTTAATGACCTCTGACCTATCAGAGCTCTGGATCTATCAGACTTCACAGAGCGACAACCAATCACCATCAACCACCCACCGTGCCGCCCCCTCctaacacacgcacaaacacacccacacacacacagtccctgcTGGTTGTGAAACTGAACATGATGCTGTTGAACTGGAGAGATGACTAGCCTATTGGGGGTTGGACCTTCAGTGAAGACCATGTGATCTCACCAGCCAATGACAGACAGCTGGACTTTAATTGGCTCCTCCTTCATCAACCAGGCCCCACCCACCTCACTGGCGTTGGCACTTAGTTACACGGCTGCCATAGCGATGTGAGAGAGAGGATAACATGATAACGTTCTActaccctcttcctcctctgacccgggaggaagaggaggtgttgCAGGAAGGAAGGGGACAGGGTGGcacagtggggggggggtgtttctCCT
>TU1167229
ACAACAACAAAGACGGACGGAGGAAAAGGACAGCTTTTAGTGATCGCTGCTGCTGGATACCTGACAACATCACTCCTTGACCATTACACAAGCACACTAGAAAGAGGACAACCGTTTCATGATATGAAAAACATTACCATCAAGCACACAAGTCAATATATGTCAAGATTCGCTCTGAGCAGATTCGTTTCAGGTGGTGTAGTTTCCTCGTGGTTGCTGTGTGGAGCCTGCCGCCACACACCCACTCCTCAACAACGACGGCTTTTGCTTGCATCTTCCAGTGCTTCTTCTGTCAGCAAGTTCAGCAGAGCTGCTGCTCGTCCGCCGCTAGCCCGGACGCCGCAGCCCCCGGCACATCAGCCAATCACAGCCCAGAGCCCCGCCCATGTGACATGGTGAAGATGACCAAGTCGAAGACGTTTCAGGCCTACCTGCCCTCGTGTCATCGCACCTACAGCTGTATACACTGTCGGGCACACCTGGCCAACCACGACGAACTCATCTCTAAGtcATTCCAAGGAAGCCAGGGGAGAGCCTACCTCTTTAACTCTGTtgTGAACGTGGGCTGTGGGCCGGCAGAGGAGCGGGTTCTCCTAACAGGTCTACATGCCGTCGCTGACATCTACTGTGAAACCTGTAAAACCACTCTGGGATGGAAATACGAACATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATCATCGAGCTGGCTCACATGATTAAAGACAATGGTTGGGAGTGACATCGCTTCCTGTCTCCGGCCCGTTAATGACCTCTGACCTATCAGAGCTCTGGATCTATCAGACTTCACAGAGCGACAACCAATCACCATCAACCACCCACCGTGCCGCCCCCTCctaacacacgcacaaacacacccacacacacacagtccctgcTGGTTGTGAAACTGAACATGATGCTGTTGAACTGGAGAGATGACTAGCCTATTGGGGGTTGGACCTTCAGTGAAGACCATGTGATCTCACCAGCCAATGACAGACAGCTGGACTTTAATTGGCTCCTCCTTCATCAACCAGGCCCCACCCACCTCACTGGCGTTGGCACTTAGTTACACGGCTGCCATAGCGATGTGAGAGAGAGGATAACATGATAACGTTCTActaccctcttcctcctctgacccgggaggaagaggaggtgttgCAGGAAGGAAGGGGACAGGGTGGcacagtggggggggggtgtttctCCTTGTGTTTTAATCTTTGATTTATTCGTGAATATATTTTtctttttcaatattttttttcagtCTTTGATCTTTAATGATGACTTCACTGTGTGGGACGTCCCGGTAACACCCCAAAACGTACCCCGAGCAGAGAGGCGGGGATAGATTGATATTATATGTAGATAGATATGTTTTATCCAACAGCATTGTGGCTGGCTCCATATAGCAACAGTACTATTAGATAAGGTTTAccagaggagatagagggaggactatgtttcccaaatggcactctctGCCTtggtgcactaccctatgggccctggtctaaagtagagcactatgtagggaatagggtgcaatttgggacgctgCCTAGAACAGGCTTGACAACCACAGAACACACCCACGCTTCAtattgtgttacaacctgaactAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATTACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATGTACATGTATAGAGTGTTTTTAGAGATATGTGATATACATTTGTATGGACATTTATTCTCATGCAtgtatatacaggtaactgccaaagtaaaggaaacaccaacatatagCGTCtcaatagggcgttgggcctccaccaaTTAGAACAGCTTCAGTCCATCTTGgcattctacaagtgtctggaactctattggagggatgagacgccattcttccacgagaaattccaccattttgtgtttttttgttgatggtggtgaaaaACGCCGTCTCAGGTGTCGCTCCTGAATCTCCCGGTAGTGTTcgattgggttgagatctggtgactgagacggccacgACATAGGGTTTTtcaccctaagcatgatgggatgttaattgcttaattaactcaggaaacaCCAGCTTTCAATCCCTCATTTCCTCCAGTGTTTCCATTATTCTGTCAGTTCCCtgtacatatacagtatcatgtattgtATGTATATGAGTAGAATGTCTACTAGTGTGTTGCCCACCTTCAACACAGTGGCAGACTGGAAGGCAGATACCTAATTTGTACTTTGCAGAGGCCTTTGGTTCATAGGTTTAGAGGCaaaagtctgtctgtctatctgtctcttttAAGGCCTTTCCTCCGATGATTAAAAGATTGTATGAGATGCTGAATGATATTGAGGGGTTGCTGGCTAGATCATCTCCATATTAGTTATTAGATCAATTAAATATCGCTGCTTTACTCGTTTCTACTCGTCACCAATCCTGCTTTACCCGTTCCTATGCTTCCCCAATCGGTGATCCGACCTAAATCAAGGGTTTATAATCTCACCCGGTTCACTTTAAGTCACTTTGAACATCCTCGGCATGAACAATGTTCCCCTTTTCCACAGAAAACGAAATAAAAATGTTCATTGCAATTCTTTGCTGCTATGAGAGAAATTACAATCCTtcatcctttctctcttcccttcgtTCTGgagatcttttttttttgttgcacttTATGCCTGGCGCACGGTCGCACggttgcttctctctctctgtgttctcgtCCTCGTCGTTAGTTTGCCTCTAAGCTGAATGAATCGTGTGCCTCTCTTCCTATTTTCTCCTGACTTTCTCCTGTGTTGTGCCGTGCACAACTCTAAACTACGAGCCACCAAAAACAGCTCAAACCCACATCGATAGATACAAATATATAGATTGGTAGATAAATACTTTACGGGTGAAAACTGAGCGTTCAATGGCTGCTGTGCCTCAAGAATAGTAGATTATATATAGGCTACACGTATCG
>TU1167230
ACTATCATCACACAAAAAACACAACTCATCCAATTGCAAGAATTGATCCTAGAATATACTGAAGAATCGTGCGTGAAGTCATTATTTCATCTCTAGTGCTAAACCTCGCCGAGAACAAAACAACACGACACGGATTTGAATTCCATTCCATATATTGGACAAGCTGCAGTAGGGACGGGATAGCCTCCTGCCCAGCTGACGCCGGCGGTGACCTAGCTACATGACAATTAACATCATCCAGAAAACCAAGCCCGCTAATTAAACTGCACAGTTTTTTATTCGGGACTTTAAACGTGTTGTTCCGACAGTGTAGGCAACCTACTGGATAGCAGGAACCAGCCTAGACAAGGCTACTCTTCATCTCTCCTTTAACTGCCCCAGTCCGCTGTGTTATTTGTGCATGGATTGAATCACTTGAGGCTCAGTCGGAATCTGCAATGATTTGCTGAGACTGGAGAAAGACCCGAGCCGACCGTGTTGAAGTCTAAAAGGATGTACAGATAGGACGGAGTTTGTTTGTGTGGAACCCGGACCCGCATGCTGCTGTTCAGCCGTAGTCTTTTAGCCAGATCAGACTAGGCCAACAGTATCTCCTTCATTATTGAGTTACCTGCACAGTCGGGTATTGAGTTAGTTACCTGCACCGCTGGGCCGAATGGAAACATGAGTGTAACACAGTGAGGTGACGTCTCCGTCTTTGGGGCCGTGGCAGCCCGGGCACAGACTGTGTTGTGAATGTGACATGCAGCTTCAGCGGAGTAATTATTACCTCCGCTTCCTACGTTCAAACGGGAATAAAACATTGTTTTGTGTGTAGTTTCCTCGTGGTTGCTGTGTGGAGCCTGCCGCCACACACCCACTCCTCAACAACGACGGCTTTTGCTTGCATCTTCCAGTGCTTCTTCTGTCAGCAAGTTCAGCAGAGCTGCTGCTCGTCCGCCGCTAGCCCGGACGCCGCAGCCCCCGGCACATCAGCCAATCACAGCCCAGAGCCCCGCCCATGTGACATGGTGAAGATGACCAAGTCGAAGACGTTTCAGGCCTACCTGCCCTCGTGTCATCGCACCTACAGCTGTATACACTGTCGGGCACACCTGGCCAACCACGACGAACTCATCTCTAAGtcATTCCAAGGAAGCCAGGGGAGAGCCTACCTCTTTAACTCTGTtgTGAACGTGGGCTGTGGGCCGGCAGAGGAGCGGGTTCTCCTAACAGGTCTACATGCCGTCGCTGACATCTACTGTGAAACCTGTAAAACCACTCTGGGATGGAAATACGAACATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATCATCGAGCTGGCTCACATGATTAAAGACAATGGTTGGGAGTGACATCGCTTCCTGTCTCCGGCCCGTTAATGACCTCTGACCTATCAGAGCTCTGGATCTATCAGACTTCACAGAGCGACAACCAATCACCATCAACCACCCACCGTGCCGCCCCCTCctaacacacgcacaaacacacccacacacacacagtccctgcTGGTTGTGAAACTGAACATGATGCTGTTGAACTGGAGAGATGACTAGCCTATTGGGGGTTGGACCTTCAGTGAAGACCATGTGATCTCACCAGCCAATGACAGACAGCTGGACTTTAATTGGCTCCTCCTTCATCAACCAGGCCCCACCCACCTCACTGGCGTTGGCACTTAGTTACACGGCTGCCATAGCGATGTGAGAGAGAGGATAACATGATAACGTTCTActaccctcttcctcctctgacccgggaggaagaggaggtgttgCAGGAAGGAAGGGGACAGGGTGGcacagtggggggggggtgtttctCCTTGTGTTTTAATCTTTGATTTATTCGTGAATATATTTTtctttttcaatattttttttcagtCTTTGATCTTTAATGATGACTTCACTGTGTGGGACGTCCCGGTAACACCCCAAAACGTACCCCGAGCAGAGAGGCGGGGATAGATTGATATTATATGTAGATAGATATGTTTTATCCAACAGCATTGTGGCTGGCTCCATATAGCAACAGTACTATTAGATAAGGTTTAccagaggagatagagggaggactatgtttcccaaatggcactctctGCCTtggtgcactaccctatgggccctggtctaaagtagagcactatgtagggaatagggtgcaatttgggacgctgCCTAGAACAGGCTTGACAACCACAGAACACACCCACGCTTCAtattgtgttacaacctgaactAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATTACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATCACACCCACGTAGTTCACAACCTGAACTAAACTAACCATGTACATGTATAGAGTGTTTTTAGAGATATGTGATATACATTTGTATGGACATTTATTCTCATGCAtgtatatacaggtaactgccaaagtaaaggaaacaccaacatatagCGTCtcaatagggcgttgggcctccaccaaTTAGAACAGCTTCAGTCCATCTTGgcattctacaagtgtctggaactctattggagggatgagacgccattcttccacgagaaattccaccattttgtgtttttttgttgatggtggtgaaaaACGCCGTCTCAGGTGTCGCTCCTGAATCTCCCGGTAGTGTTcgattgggttgagatctggtgactgagacggccacgACATAGGGTTTTtcaccctaagcatgatgggatgttaattgcttaattaactcaggaaacaCCAGCTTTCAATCCCTCATTTCCTCCAGTGTTTCCATTATTCTGTCAGTTCCCtgtacatatacagtatcatgtattgtATGTATATGAGTAGAATGTCTACTAGTGTGTTGCCCACCTTCAACACAGTGGCAGACTGGAAGGCAGATACCTAATTTGTACTTTGCAGAGGCCTTTGGTTCATAGGTTTAGAGGCaaaagtctgtctgtctatctgtctcttttAAGGCCTTTCCTCCGATGATTAAAAGATTGTATGAGATGCTGAATGATATTGAGGGGTTGCTGGCTAGATCATCTCCATATTAGTTATTAGATCAATTAAATATCGCTGCTTTACTCGTTTCTACTCGTCACCAATCCTGCTTTACCCGTTCCTATGCTTCCCCAATCGGTGATCCGACCTAAATCAAGGGTTTATAATCTCACCCGGTTCACTTTAAGTCACTTTGAACATCCTCGGCATGAACAATGTTCCCCTTTTCCACAGAAAACGAAATAAAAATGTTCATTGCAATTCTTTGCTGCTATGAGAGAAATTACAATCCTtcatcctttctctcttcccttcgtTCTGgagatcttttttttttgttgcacttTATGCCTGGCGCACGGTCGCACggttgcttctctctctctgtgttctcgtCCTCGTCGTTAGTTTGCCTCTAAGCTGAATGAATCGTGTGCCTCTCTTCCTATTTTCTCCTGACTTTCTCCTGTGTTGTGCCGTGCACAACTCTAAACTACGAGCCACCAAAAACAGCTCAAACCCACATCGATAGATACAAATATATAGATTGGTAGATAAATACTTTACGGGTGAAAACTGAGCGTTCAATGGCTGCTGTGCCTCAAGAATAGTAGATTATATATAGGCTACACGTATCG

Function

symbol description
ypel1 Predicted to enable metal ion binding activity. Is expressed in several structures, including axis; corpuscles of Stannius; mesoderm; nervous system; and neural plate. Orthologous to human YPEL1 (yippee like 1).

NR:

description
PREDICTED: protein yippee-like 1 isoform X1

GO:

id name namespace
GO:0031641 regulation of myelination biological_process
GO:0051898 negative regulation of protein kinase B signaling biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936554.1 False 1466 mRNA 0.51 5 83875934 83900716
XM_036936555.1 False 1166 mRNA 0.54 5 83875934 83902364
TU1167229 False 3260 TUCP 0.46 5 83873900 83900476
TU1167230 True 3875 TUCP 0.46 5 83873900 83903039

Neighbor

gene id symbol gene type direction distance location
LOC118937426 LOC100380868 coding downstream 179328 83692703 ~ 83698034 (-)
LOC110536498 LOC105030224 coding downstream 514920 83341427 ~ 83361014 (-)
LOC110536507 LOC105014547 coding downstream 586985 83064063 ~ 83288949 (-)
LOC100136308 LOC106570939 coding downstream 913903 82873779 ~ 82962031 (-)
LOC118937425 NA coding downstream 1002210 82872722 ~ 82873724 (-)
LOC110536511 NA coding upstream 12449 83914813 ~ 83921303 (-)
LOC110535142 mapk1 coding upstream 20244 83922608 ~ 83982640 (-)
grsf1 grsf1 coding upstream 143148 84045512 ~ 84084200 (-)
adamts3 LOC107719190 coding upstream 332929 84235293 ~ 84426152 (-)
smarca2 NA coding upstream 599521 84501885 ~ 84719806 (-)
G1025595 NA non-coding downstream 2137 83873310 ~ 83873797 (-)
G1025593 NA non-coding downstream 4605 83870154 ~ 83871329 (-)
G1025620 NA non-coding downstream 15002 83860659 ~ 83860932 (-)
G1025619 NA non-coding downstream 15863 83859860 ~ 83860071 (-)
G1025615 NA non-coding downstream 19837 83855686 ~ 83856097 (-)
G1025642 NA non-coding upstream 4218 83906582 ~ 83907246 (-)
G1025643 NA non-coding upstream 5036 83907400 ~ 83908226 (-)
G1025644 NA non-coding upstream 6989 83909353 ~ 83909706 (-)
G1025645 NA non-coding upstream 7452 83909816 ~ 83910315 (-)
G1025630 NA non-coding upstream 8910 83911274 ~ 83916203 (-)
G1025498 NA other downstream 157326 83683265 ~ 83718776 (-)
G1025467 NA other downstream 249144 83544297 ~ 83626790 (-)
G1025481 NA other downstream 310360 83562302 ~ 83565574 (-)
LOC110536484 LOC106570928 other downstream 1616969 82257489 ~ 82522382 (-)
G1023858 NA other downstream 1961567 81912957 ~ 81914367 (-)
G1026586 NA other upstream 1284962 85187326 ~ 85197500 (-)
G1026978 NA other upstream 1710988 85613352 ~ 85614375 (-)

Expression


Co-expression Network