Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110535141 |
| gene name | rufy3 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 83990594 ~ 84047260 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rufy3 | Predicted to be involved in regulation of axonogenesis. Predicted to be active in cytoplasm. Is expressed in nervous system and trigeminal placode. Orthologous to human RUFY3 (RUN and FYVE domain containing 3). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036936565.1 | False | 5045 | mRNA | 0.43 | 12 | 83990594 | 84035337 |
| XM_036936563.1 | False | 3058 | mRNA | 0.47 | 17 | 83990597 | 84044429 |
| XM_036936566.1 | False | 5457 | mRNA | 0.45 | 12 | 84005892 | 84035337 |
| XM_036936564.1 | False | 3449 | mRNA | 0.49 | 17 | 84005916 | 84044429 |
| TU1166621 | False | 4398 | lncRNA | 0.41 | 7 | 84032083 | 84043705 |
| TU1166614 | False | 4276 | lncRNA | 0.41 | 7 | 84032311 | 84043705 |
| TU1166615 | False | 5128 | lncRNA | 0.40 | 7 | 84032311 | 84047260 |
| TU1166622 | False | 2842 | lncRNA | 0.39 | 2 | 84032311 | 84035307 |
| TU1166610 | True | 652 | lncRNA | 0.36 | 2 | 84043774 | 84047260 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ppil2 | ppil2 | coding | upstream | 177127 | 83778696 ~ 83813467 (+) |
| psat1 | psat1 | coding | upstream | 217727 | 83745190 ~ 83772867 (+) |
| LOC110536506 | LOC106570961 | coding | upstream | 261730 | 83719199 ~ 83729585 (+) |
| isca1 | LOC106570962 | coding | upstream | 273770 | 83704552 ~ 83716824 (+) |
| tut7 | LOC100380868 | coding | upstream | 292557 | 83634384 ~ 83698037 (+) |
| mccc2 | mccc2 | coding | downstream | 40100 | 84084529 ~ 84111823 (+) |
| fbxl8 | fbxl8 | coding | downstream | 70320 | 84114749 ~ 84137392 (+) |
| LOC118937432 | NA | coding | downstream | 1247217 | 85291108 ~ 85295957 (+) |
| fbp1a | LOC106593443 | coding | downstream | 1365390 | 85409819 ~ 85429509 (+) |
| LOC118937431 | NA | coding | downstream | 1476157 | 85520586 ~ 85522159 (+) |
| G1025208 | NA | non-coding | upstream | 20414 | 83969774 ~ 83970180 (+) |
| G1025126 | NA | non-coding | upstream | 68420 | 83920583 ~ 83922174 (+) |
| G1025187 | NA | non-coding | upstream | 80880 | 83909478 ~ 83909714 (+) |
| G1025169 | NA | non-coding | upstream | 108971 | 83878800 ~ 83881623 (+) |
| G1025168 | NA | non-coding | upstream | 109408 | 83877246 ~ 83881186 (+) |
| G1025120 | NA | non-coding | downstream | 631 | 84045060 ~ 84049084 (+) |
| G1025242 | NA | non-coding | downstream | 34292 | 84078721 ~ 84080723 (+) |
| G1025243 | NA | non-coding | downstream | 41987 | 84086416 ~ 84086700 (+) |
| G1025247 | NA | non-coding | downstream | 49670 | 84094099 ~ 84095959 (+) |
| G1025248 | NA | non-coding | downstream | 50093 | 84094522 ~ 84095642 (+) |
| G1025108 | NA | other | upstream | 230119 | 83757462 ~ 83760475 (+) |
| LOC110536489 | LOC106570933 | other | upstream | 1363254 | 82623275 ~ 82627340 (+) |
| G1023978 | NA | other | upstream | 1859953 | 82127889 ~ 82130641 (+) |
| G1023980 | NA | other | upstream | 1860731 | 82128825 ~ 82129863 (+) |
| G1023377 | ndufs4 | other | upstream | 2446949 | 81497785 ~ 81543645 (+) |
| G1026397 | NA | other | downstream | 915100 | 84959529 ~ 84960032 (+) |
| G1026425 | NA | other | downstream | 940171 | 84984600 ~ 84985246 (+) |
| G1026580 | NA | other | downstream | 1139371 | 85183800 ~ 85197735 (+) |
| G1026612 | NA | other | downstream | 1194085 | 85238514 ~ 85239067 (+) |
| G1026615 | NA | other | downstream | 1203582 | 85248011 ~ 85249118 (+) |
| G1025235 | NA | non-coding | upstream | 1639 | 84029656 ~ 84030444 (+) |
| G1025128 | NA | non-coding | upstream | 26463 | 84004882 ~ 84005620 (+) |
| G1025227 | NA | non-coding | upstream | 34308 | 83996950 ~ 83997775 (+) |
| G1025116 | NA | non-coding | downstream | 64936 | 84112196 ~ 84112631 (+) |
