Gene
RNA
| Item | Value |
|---|---|
| gene id | smarca2 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 84501885 ~ 84719806 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: probable global transcription activator SNF2L2 |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004386 | helicase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036936585.1 | False | 7442 | mRNA | 0.49 | 36 | 84501885 | 84719806 |
| XM_036936588.1 | False | 7394 | mRNA | 0.49 | 36 | 84501885 | 84719806 |
| XM_036936589.1 | False | 7367 | mRNA | 0.49 | 35 | 84501885 | 84719806 |
| XM_036936591.1 | False | 7346 | mRNA | 0.49 | 35 | 84501885 | 84719806 |
| XM_036936587.1 | False | 5201 | mRNA | 0.54 | 35 | 84504112 | 84719806 |
| XM_036936592.1 | False | 5126 | mRNA | 0.54 | 34 | 84504112 | 84719806 |
| XM_036936586.1 | False | 5078 | mRNA | 0.55 | 35 | 84505946 | 84719806 |
| XR_005034778.1 | False | 4159 | mRNA | 0.55 | 29 | 84577715 | 84719806 |
| XM_036936593.1 | True | 4176 | mRNA | 0.55 | 28 | 84577758 | 84719806 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| adamts3 | LOC107719190 | coding | downstream | 75733 | 84235293 ~ 84426152 (-) |
| grsf1 | grsf1 | coding | downstream | 417685 | 84045512 ~ 84084200 (-) |
| LOC110535142 | mapk1 | coding | downstream | 519245 | 83922608 ~ 83982640 (-) |
| LOC110536511 | NA | coding | downstream | 582256 | 83914813 ~ 83921303 (-) |
| ypel1 | ypel1 | coding | downstream | 599521 | 83873900 ~ 83903039 (-) |
| dmrt2a | LOC106570979 | coding | upstream | 241485 | 84961291 ~ 84965767 (-) |
| LOC118937429 | dmrt3 | coding | upstream | 326308 | 85046114 ~ 85122372 (-) |
| kank1a | kank1 | coding | upstream | 519803 | 85239609 ~ 85392002 (-) |
| dapk1 | dapk1 | coding | upstream | 732379 | 85452185 ~ 85658741 (-) |
| LOC118937430 | NA | coding | upstream | 800773 | 85520579 ~ 85522516 (-) |
| G1026152 | NA | non-coding | downstream | 36283 | 84464658 ~ 84465602 (-) |
| G1026111 | NA | non-coding | downstream | 80185 | 84420577 ~ 84421700 (-) |
| G1026091 | NA | non-coding | downstream | 122982 | 84372978 ~ 84378903 (-) |
| G1026031 | NA | non-coding | downstream | 266647 | 84226393 ~ 84235238 (-) |
| G1026027 | NA | non-coding | downstream | 274308 | 84220826 ~ 84227577 (-) |
| G1026230 | NA | non-coding | upstream | 22265 | 84742071 ~ 84742354 (-) |
| G1026231 | NA | non-coding | upstream | 23395 | 84743201 ~ 84743401 (-) |
| G1026232 | NA | non-coding | upstream | 38096 | 84757902 ~ 84758137 (-) |
| G1026234 | NA | non-coding | upstream | 40996 | 84760802 ~ 84767945 (-) |
| G1026241 | NA | non-coding | upstream | 56210 | 84776016 ~ 84776444 (-) |
| G1025498 | NA | other | downstream | 783277 | 83683265 ~ 83718776 (-) |
| G1025467 | NA | other | downstream | 875095 | 83544297 ~ 83626790 (-) |
| G1025481 | NA | other | downstream | 936311 | 83562302 ~ 83565574 (-) |
| LOC110536484 | LOC106570928 | other | downstream | 2242920 | 82257489 ~ 82522382 (-) |
| G1026586 | NA | other | upstream | 467520 | 85187326 ~ 85197500 (-) |
| G1026978 | NA | other | upstream | 893546 | 85613352 ~ 85614375 (-) |
