LOC118937429 (dmrt3)


Basic Information

Item Value
gene id LOC118937429
gene name dmrt3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 85046114 ~ 85122372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936595.1
ctctctccccaaggATTCGTTGAGCGGGTGCCAGTGATACGTGACGGTATTTAGTTACTCGGCTCCATAACTGCGTGTCAGATGGAGGCTGATGCACGTGTGTCTTCATTGCCAGGGGGACAGGTGAGGTAGAGGTGGATCCAACCAGCACCTCCTATATTGCAGACAGGACAGCGTGTAGCGAACAGCGACAGGACTTGATCTCTTCACTCTCACTTCTGTCTGACAACTCTACTCTGCCTGTCCCGGCCCGCGTGCACACGCCCTTATCAGATGCACCTCGCGCCTCCATCACGTTGAGGTAAAgtagtgagagtgtgtgtgtgactgactgactggctgactaacgGTGTGAGAAATGAATGGCTACGGATCGCCCTACCTGTACATGGGGGGCCCAGTGACCCAAGCCCGAGCGCCGCTCCAGAGGACCCCCAAGTGCGCGCGGTGCCGGAACCACGGCGTCCTGTCCTGGCTAAAGGGCCACAAGCGATACTGCCGCTTCAAGGACTGCACCTGTGAGAAATGCATCCTGATCATCGAGAGGCAGCGGGTCATGGCGGCGCAGGTGGCGCTCCGCAGACAGCAGGCCAACGAGAGTCTGGAGAGCCTGATCCCGGAGTCTCTGAGAGCTCTGCCCGGAATCACGGTGCCTGGACCCGGCGAGGGGAACCAGGGCCTGCAGCCCCGTTCTGGAGGAATGGACCTCCTATGGACCTCGAAACAGACTGCCAACATGCAGGaccTGAGTGAGGATACGTCGGGGGACCACTCCGGTGGGGAGAATGGTGGTGGTAGCGGCAGTGAGAAGGACCAGGACCCTAGCAGCTCCCCCGAGGGCTCCAAGCCTTCCTGCTTCACCCCTGAGCCCCCGGGCACCCCAAACCAGGCCGAAGAGTGTCGCTACAGCTTCCCCCATCCCCTTCccagcctccctctccccctagcCTTCCCCAAGACCTGCAGCACCTCTCCAGAGCCCAAGGTAGACAGCCCCACTAAGGGTTACCCCGGTGTTGGGGCAGGGGGGCTGCCAGTGGACCACAGCCTGGTGATTGAGGGCCTGTCTGGGTCTGTCTCCCTTCCTTTCAACCTGCGAGCCAACCGGCCACCCCTGGAGGTGCTGAAGAAGATCTTCCCATCCCACAAGCCCCCGGTGCTGGAGCTGATCCTGCAGGGGTGTGGAGGGGACCTGGTGGGGGCCATTGAGGTGCTTCTGTCCAGCCAGGCCCAGGAGGCCAGGGGGGGTCACCCCCACCCCGACACCCTGGTCCTTCCCTCCAATGGCCACCTCCTCGATCACCCCCTGGGGTCCTACCACCCTCTGGCCTCCGCCGCTAAGTGGTCTGTGGGCTCTGCTTTCAGGGTGCCTGAGTCTCTGCGCTTCTCGTCTGACTCGTCGTCCGGCCCCCTGGCCCTACACCCCGGGTCTTTCCCCCATCCCCCCCGCTACCCCTTGATGCTGAGGAACTCTCTGACACGTGGCGGCCAGGTCGGACCCTTCTGCAACGACGTGACGCTGTGGAACACCATGACactgcagcagcagtaccaaCTCAGGTCAGCTCAGTacgtctctcctttctcctccactGGCGTCTTCCAacgctctccgctcctctcctcttcctcctcctcctctccgctcctctcctcctcccgccCCCAGGAAGAGCACCGTCTCTCCCAGCTGGAGGAGGGCTGCCACCCTGCCCCCATCCCCCCCACCCCCGGGGCCAAACAGACCCTCTACACCCATGAGGAGGAGTACGAGGACCGCTCCGACTCCTCCGACTCACGAATTCTCAACTCCTCCACCTGAACCTCCTGAACCACCCAAACCTATGGGTTATATCTCTATACCTGCACCAATGAAACAATGAACCTGTGGGTTATATCTCTATACCTGAACCAATGAAACAATGAACCTGTGGGTTATATCTCTATACCTGAACCAATGAACCTGTGGGTTATATCTCTATACCTGAACCAATGAAACAATGAACCTGTGGGTTATATCTCTATACCTGAACCAATGAACCAGTGGGTTATACCTCTATACCTGAACCAATGAAACAATGAACCTGTGGGTTATATCACTATACCTGAACCAATGAAACAATGAACCTGTGGGTTGTATCTCTATACCTGAACCAATGAAACAATGAACCTGTGGGTTATATCTCTATACCTGAAACAATGAACCATGCCGCACTGGTTACTTAAGCaccaaaaatgtattgtgaacGAATCTTTAATGTGAATAATGCAAGAGTGGGTATCAAGACAGGTTGTTGTCTTGAACTGAACTTTGTTACCCAGCCATCGGCCCCCCTACAGGTAATGTAGCTGAATGTTAGGTCGTAACATTATCTCTCTGCAGGTAATGTAGCTGAATGTTAGGTCGTAACATCTCTCTGCAGGTAATGTAGCTGAATGTTAGGTCGTAACATTATCTCTCTACAGGTAATGTAGCTGAATGTTAGGTCATAACATTATCTCTCTGCAGGTAATGTAGCTGAATGTTAGGTCATAACATGATCTCTCTACAGGTAATGTAGCTGAATGTTAGGTCGTAACATTATCTCTCTGCAGGTAATGTAGCTGAATACTAGATCGTAACATTATCACATGGATATGACCAAAAATAATGAATTTAAAATAATGGGATAGATCACATAGATCACGTGTTTGTGAACGTTCATCTCTTTCCAGACAGTATGCATGTGAATAATATGTCCTTGTTAAGATCTGATGCATGTCAAGATTATTAATAAACATAGGTGATAATAGCAAAATATTGTGTCCTCGTTATTTCCAAAATGATAATATACATGGGTGCAAATTGGTTGCTATACTAAATGAATGGTATACTATAATGTAGTTTAATGTAGAATAACCCACAAGAGTAGGGATCATCAACTAAATTCA

Function

symbol description
dmrt3 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in male sex differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including adult walking behavior; transmission of nerve impulse; and ventral spinal cord interneuron specification. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: doublesex- and mab-3-related transcription factor 3

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K19490 DMRT3; doublesex- and mab-3-related transcription factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936595.1 True 2931 mRNA 0.53 2 85046114 85122372

Neighbor

gene id symbol gene type direction distance location
dmrt2a LOC106570979 coding downstream 80347 84961291 ~ 84965767 (-)
smarca2 NA coding downstream 326308 84501885 ~ 84719806 (-)
adamts3 LOC107719190 coding downstream 619962 84235293 ~ 84426152 (-)
grsf1 grsf1 coding downstream 961914 84045512 ~ 84084200 (-)
LOC110535142 mapk1 coding downstream 1063474 83922608 ~ 83982640 (-)
kank1a kank1 coding upstream 117237 85239609 ~ 85392002 (-)
dapk1 dapk1 coding upstream 329813 85452185 ~ 85658741 (-)
LOC118937430 NA coding upstream 398207 85520579 ~ 85522516 (-)
tmem8b tmem8b coding upstream 919370 86041742 ~ 86232638 (-)
G1026447 NA non-coding downstream 6011 85039863 ~ 85040103 (-)
G1026435 NA non-coding downstream 16887 85028843 ~ 85029227 (-)
G1026434 NA non-coding downstream 17905 85027857 ~ 85028209 (-)
G1026429 NA non-coding downstream 20255 85025621 ~ 85025859 (-)
G1026428 NA non-coding downstream 20673 85025074 ~ 85025441 (-)
G1026534 NA non-coding upstream 19418 85141790 ~ 85141989 (-)
G1026542 NA non-coding upstream 30007 85152379 ~ 85153018 (-)
G1026552 NA non-coding upstream 37259 85159631 ~ 85159839 (-)
G1026558 NA non-coding upstream 39320 85161692 ~ 85161893 (-)
G1026562 NA non-coding upstream 41197 85163569 ~ 85163777 (-)
ypel1 ypel1 other downstream 1143075 83873900 ~ 83903039 (-)
G1025498 NA other downstream 1327506 83683265 ~ 83718776 (-)
G1025467 NA other downstream 1419324 83544297 ~ 83626790 (-)
G1025481 NA other downstream 1480540 83562302 ~ 83565574 (-)
LOC110536484 LOC106570928 other downstream 2787149 82257489 ~ 82522382 (-)
G1026586 NA other upstream 64954 85187326 ~ 85197500 (-)
G1026978 NA other upstream 490980 85613352 ~ 85614375 (-)

Expression


Co-expression Network